Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21805

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,712,284	+				+1.0
4,712,285	-		DZA65_RS21795	0.81	-1.6
4,712,285	-		DZA65_RS21795	0.81	-0.5
4,712,285	-		DZA65_RS21795	0.81	-1.2
4,712,285	-		DZA65_RS21795	0.81	-2.3
4,712,285	-		DZA65_RS21795	0.81	+1.4
4,712,297	+		DZA65_RS21795	0.83	-0.3
4,712,297	+		DZA65_RS21795	0.83	-0.3
4,712,298	-		DZA65_RS21795	0.83	-0.7
4,712,298	-		DZA65_RS21795	0.83	-1.6
4,712,298	-		DZA65_RS21795	0.83	-0.4
4,712,315	+		DZA65_RS21795	0.86	-0.9
4,712,316	-		DZA65_RS21795	0.86	+0.2
4,712,329	+		DZA65_RS21795	0.88	-0.6
4,712,329	+		DZA65_RS21795	0.88	-1.8
4,712,330	-		DZA65_RS21795	0.88	-0.1
4,712,336	+		DZA65_RS21795	0.89	-0.9
4,712,336	+		DZA65_RS21795	0.89	+0.5
4,712,337	-		DZA65_RS21795	0.89	+0.2
4,712,337	-		DZA65_RS21795	0.89	-0.4
4,712,343	+				+0.1
4,712,344	-				+0.4
4,712,344	-				-0.5
4,712,344	-				+0.1
4,712,344	-				-0.2
4,712,344	-				-0.4
4,712,344	-				-0.2
4,712,422	-				-0.1
4,712,427	+				-1.2
4,712,427	+				+0.7
4,712,428	-				+0.8
4,712,428	-				+0.2
4,712,428	-				-0.8
4,712,499	-				-2.1
4,712,516	+				+1.2
4,712,517	-				-0.4
4,712,517	-				-0.1
4,712,538	-				-0.1
4,712,558	+				+0.1
4,712,559	-				-0.2
4,712,628	+				+0.7
4,712,628	+				-0.4
4,712,628	+				-0.1
4,712,628	+				-1.0
4,712,628	+				+1.0
4,712,628	+				-0.2
4,712,628	+				-0.1
4,712,628	+				+0.8
4,712,628	+				-1.2
4,712,628	+				+1.4
4,712,629	-				+0.9
4,712,629	-				-0.9
4,712,629	-				-0.5
4,712,629	-				+0.7
4,712,629	-				+1.0
4,712,631	-				+0.7
4,712,772	-		DZA65_RS21800	0.29	-1.6
4,712,838	+		DZA65_RS21800	0.40	-1.1
4,712,839	-		DZA65_RS21800	0.41	-0.9
4,713,065	+		DZA65_RS21800	0.81	+0.2
4,713,148	+				+0.6
4,713,148	+				+0.2
4,713,148	+				+0.4
4,713,149	-				-0.4
4,713,149	-				-0.0
4,713,149	-				-0.6
4,713,149	-				-0.0
4,713,268	+				+1.6
4,713,268	+				+0.1
4,713,269	-				-1.3
4,713,269	-				-1.1
4,713,322	+				-0.4
4,713,322	+				-0.8
4,713,323	-				-1.2
4,713,323	-				-0.5
4,713,323	-				-1.5
4,713,323	-				+0.3
4,713,323	-				-1.6
4,713,323	-				-0.3
4,713,323	-				-1.5
4,713,323	-				-0.2
4,713,323	-				-2.4
4,713,323	-				-0.1
4,713,323	-				+0.6
4,713,341	+				-0.1
4,713,341	+				+0.7
4,713,342	-				+0.8
4,713,342	-				+1.4
4,713,342	-				-0.3
4,713,343	+				+0.8
4,713,343	+				-0.0
4,713,343	+				-1.6
4,713,343	+				+0.7
4,713,343	+				-0.0
4,713,343	+				-1.1
4,713,343	+				+1.4
4,713,343	+				+0.4
4,713,344	-				+1.8
4,713,344	-				+0.7
4,713,344	-				+0.8
4,713,344	-				-0.0
4,713,344	-				-1.3
4,713,344	-				-1.0
4,713,344	-				+0.5
4,713,344	-				+0.4
4,713,344	-				-0.2
4,713,344	-				+0.1
4,713,344	-				+0.2
4,713,344	-				+0.1
4,713,344	-				+1.4
4,713,375	+		DZA65_RS21805	0.12	-0.1
4,713,375	+		DZA65_RS21805	0.12	+0.4
4,713,376	-		DZA65_RS21805	0.12	-0.4
4,713,406	+		DZA65_RS21805	0.14	-0.0
4,713,406	+		DZA65_RS21805	0.14	-0.9
4,713,406	+		DZA65_RS21805	0.14	-2.4
4,713,406	+		DZA65_RS21805	0.14	-1.1
4,713,406	+		DZA65_RS21805	0.14	+0.1
4,713,406	+		DZA65_RS21805	0.14	+1.5
4,713,406	+		DZA65_RS21805	0.14	+1.5
4,713,406	+		DZA65_RS21805	0.14	-0.4
4,713,406	+		DZA65_RS21805	0.14	-0.7
4,713,406	+		DZA65_RS21805	0.14	+0.5
4,713,407	-		DZA65_RS21805	0.14	+1.1
4,713,407	-		DZA65_RS21805	0.14	-1.2
4,713,407	-		DZA65_RS21805	0.14	-0.4
4,713,407	-		DZA65_RS21805	0.14	-0.9
4,713,407	-		DZA65_RS21805	0.14	-0.6
4,713,407	-		DZA65_RS21805	0.14	-0.8
4,713,407	-		DZA65_RS21805	0.14	-0.9
4,713,706	+		DZA65_RS21805	0.39	-1.0
4,713,707	-		DZA65_RS21805	0.39	-0.6
4,713,719	+		DZA65_RS21805	0.40	-0.9
4,713,720	-		DZA65_RS21805	0.40	-0.6
4,713,773	-		DZA65_RS21805	0.44	+0.2
4,713,773	-		DZA65_RS21805	0.44	+0.0
4,713,826	-		DZA65_RS21805	0.48	+0.2
4,713,919	+		DZA65_RS21805	0.56	-1.2
4,713,919	+		DZA65_RS21805	0.56	-0.6
4,713,919	+		DZA65_RS21805	0.56	+0.1
4,713,920	-		DZA65_RS21805	0.56	+0.1
4,713,920	-		DZA65_RS21805	0.56	-1.6
4,713,920	-		DZA65_RS21805	0.56	-0.5
4,713,961	+		DZA65_RS21805	0.59	+0.2
4,713,998	+		DZA65_RS21805	0.62	-0.2
4,713,999	-		DZA65_RS21805	0.62	-2.5
4,713,999	-		DZA65_RS21805	0.62	-0.7
4,713,999	-		DZA65_RS21805	0.62	-0.3
4,714,244	+		DZA65_RS21805	0.83	+1.4
4,714,245	-		DZA65_RS21805	0.83	-0.9
4,714,252	+		DZA65_RS21805	0.83	+1.1
4,714,252	+		DZA65_RS21805	0.83	-1.5
4,714,253	-		DZA65_RS21805	0.83	+0.4
4,714,312	+		DZA65_RS21805	0.88	-1.4
4,714,312	+		DZA65_RS21805	0.88	+0.9
4,714,312	+		DZA65_RS21805	0.88	+0.4
4,714,312	+		DZA65_RS21805	0.88	+0.4
4,714,313	-		DZA65_RS21805	0.88	-1.0
4,714,313	-		DZA65_RS21805	0.88	+0.1
4,714,313	-		DZA65_RS21805	0.88	+0.5
4,714,313	-		DZA65_RS21805	0.88	-1.2
4,714,313	-		DZA65_RS21805	0.88	-1.1
4,714,313	-		DZA65_RS21805	0.88	-2.1
4,714,313	-		DZA65_RS21805	0.88	-0.7
4,714,351	+				-0.2
4,714,351	+				-0.3
4,714,352	-				-1.2
4,714,364	+				-0.4
4,714,364	+				-0.6
4,714,364	+				+0.4
4,714,365	-				-0.2
4,714,365	-				-0.1
4,714,401	+				-0.6
4,714,401	+				+0.5
4,714,402	-				+2.0
4,714,402	-				+0.1
4,714,421	+				-0.6
4,714,422	-				-2.3
4,714,431	-				+1.4
4,714,431	-				-0.9
4,714,525	+				-0.2
4,714,525	+				+0.9
4,714,525	+				-1.5
4,714,525	+				-0.3
4,714,525	+				+0.2
4,714,525	+				+0.7
4,714,526	-				-0.4
4,714,526	-				-0.6
4,714,526	-				+0.7
4,714,526	-				-0.4
4,714,526	-				+1.8
4,714,527	+				+0.6
4,714,527	+				+0.2
4,714,527	+				-0.3
4,714,527	+				+0.4
4,714,527	+				-1.9
4,714,527	+				+0.4
4,714,527	+				+0.4
4,714,527	+				-1.2
4,714,527	+				+0.2
4,714,527	+				+0.2
4,714,527	+				-0.7
4,714,527	+				+1.2
4,714,527	+				-0.2
4,714,527	+				+0.8
4,714,527	+				+0.1
4,714,527	+				-0.8
4,714,527	+				-0.8
4,714,528	-				-0.7
4,714,528	-				+1.4
4,714,528	-				-1.2
4,714,528	-				-0.2
4,714,528	-				-0.3
4,714,528	-				-0.1
4,714,528	-				+1.0
4,714,528	-				-0.6
4,714,528	-				+1.1
4,714,528	-				-0.5
4,714,528	-				-0.1
4,714,528	-				+0.2
4,714,528	-				+0.1
4,714,529	+				-0.1
4,714,529	+				-0.2
4,714,529	+				+1.0
4,714,529	+				-0.9
4,714,529	+				-0.9
4,714,529	+				+1.7
4,714,529	+				+0.6
4,714,530	-				-0.2
4,714,530	-				-0.6
4,714,539	-				-1.1
4,714,586	-				-1.7
4,714,586	-				-1.3
4,714,594	-				+1.4
4,714,594	-				-1.9
4,714,594	-				-1.2
4,714,641	+				-0.6
4,714,641	+				-0.2
4,714,641	+				-1.4
4,714,641	+				+1.1
4,714,641	+				-0.2
4,714,641	+				+0.4
4,714,641	+				+1.1
4,714,641	+				+0.1
4,714,641	+				-1.4
4,714,641	+				+1.6
4,714,641	+				+0.8
4,714,642	-				+0.0
4,714,642	-				+0.4
4,714,642	-				+0.3
4,714,642	-				+1.4
4,714,642	-				-0.3
4,714,642	-				+0.5
4,714,651	-				+2.6
4,714,652	+				+0.4
4,714,652	+				-1.4
4,714,652	+				+1.8
4,714,652	+				+0.8
4,714,652	+				-0.6
4,714,652	+				+1.6
4,714,652	+				-0.4
4,714,728	+				+1.0
4,714,728	+				+0.2
4,714,728	+				-0.0
4,714,728	+				-0.6
4,714,728	+				+0.5
4,714,728	+				-0.1
4,714,728	+				-0.2
4,714,728	+				-0.9
4,714,728	+				-1.2
4,714,728	+				-0.1
4,714,728	+				+0.2
4,714,728	+				+1.1
4,714,728	+				+0.1
4,714,728	+				+1.4
4,714,728	+				-0.4
4,714,728	+				+1.4
4,714,728	+				-0.6
4,714,729	-				-1.4
4,714,729	-				-1.4
4,714,729	-				+0.5
4,714,729	-				-0.2
4,714,729	-				-0.7
4,714,729	-				-0.9
4,714,729	-				+2.6
4,714,729	-				+0.4
4,714,729	-				-1.1
4,714,729	-				-0.8
4,714,729	-				-0.6
4,714,729	-				-0.7
4,714,729	-				-0.2
4,714,729	-				+1.0
4,714,729	-				+0.4
4,714,730	+				+0.4
4,714,730	+				+0.5
4,714,730	+				+0.8
4,714,730	+				+0.4
4,714,730	+				+0.4
4,714,730	+				-0.3
4,714,730	+				+1.1
4,714,731	-				-2.6
4,714,731	-				+0.8
4,714,731	-				-0.6
4,714,731	-				+1.0
4,714,731	-				-1.0
4,714,731	-				+3.0
4,714,731	-				-0.0
4,714,731	-				+1.1
4,714,731	-				-1.2
4,714,731	-				-1.1
4,714,731	-				-2.3
4,714,731	-				+0.4
4,714,752	+				-1.4
4,714,752	+				+0.1
4,714,753	-				+0.1
4,714,753	-				-0.2
4,714,753	-				+0.4
4,714,753	-				+0.3
4,714,753	-				-0.2
4,714,754	+				-0.0
4,714,754	+				-1.3
4,714,754	+				+0.7
4,714,755	-				+1.5
4,714,755	-				+1.4
4,714,755	-				+0.4
4,714,755	-				-0.5
4,714,766	+				-0.3
4,714,766	+				+0.9
4,714,766	+				-1.2
4,714,766	+				-0.9
4,714,767	-				-1.6
4,714,767	-				-0.9
4,714,767	-				-0.4
4,714,767	-				-1.5
4,714,767	-				-1.0
4,714,767	-				-1.8
4,714,767	-				+0.1
4,714,767	-				-2.8
4,714,767	-				+0.4
4,714,980	+		DZA65_RS21815	0.19	-0.4
4,714,980	+		DZA65_RS21815	0.19	-1.4
4,714,981	-		DZA65_RS21815	0.20	+1.1
4,714,981	-		DZA65_RS21815	0.20	+1.1
4,714,981	-		DZA65_RS21815	0.20	-1.6
4,715,018	-		DZA65_RS21815	0.23	-1.2
4,715,018	-		DZA65_RS21815	0.23	+0.1
4,715,097	-		DZA65_RS21815	0.31	+1.4
4,715,097	-				-0.6
4,715,139	-		DZA65_RS21815	0.36	-0.1
4,715,139	-		DZA65_RS21815	0.36	-0.9
4,715,141	+		DZA65_RS21815	0.36	-0.6
4,715,188	+		DZA65_RS21815	0.41	+0.4
4,715,188	+		DZA65_RS21815	0.41	-0.5
4,715,188	+		DZA65_RS21815	0.41	+1.4
4,715,189	-		DZA65_RS21815	0.41	+1.0
4,715,189	-		DZA65_RS21815	0.41	-1.4
4,715,197	-		DZA65_RS21815	0.41	+0.3
4,715,197	-		DZA65_RS21815	0.41	+0.1
4,715,197	-		DZA65_RS21815	0.41	-1.3
4,715,207	-		DZA65_RS21815	0.42	+0.6
4,715,207	-		DZA65_RS21815	0.42	-0.6
4,715,215	+		DZA65_RS21815	0.43	+0.1
4,715,257	+		DZA65_RS21815	0.48	+1.6
4,715,257	+		DZA65_RS21815	0.48	-0.3
4,715,257	+		DZA65_RS21815	0.48	-0.3
4,715,257	+		DZA65_RS21815	0.48	-0.3
4,715,258	-		DZA65_RS21815	0.48	+0.4
4,715,258	-		DZA65_RS21815	0.48	+0.3
4,715,258	-		DZA65_RS21815	0.48	-0.4
4,715,258	-		DZA65_RS21815	0.48	+0.6
4,715,258	-		DZA65_RS21815	0.48	-0.4
4,715,293	-		DZA65_RS21815	0.51	-0.5
4,715,293	-		DZA65_RS21815	0.51	-0.9
4,715,293	-		DZA65_RS21815	0.51	+1.0
4,715,301	+		DZA65_RS21815	0.52	+0.2
4,715,326	+		DZA65_RS21815	0.55	+0.8
4,715,327	-		DZA65_RS21815	0.55	-0.0
4,715,347	+		DZA65_RS21815	0.57	+0.4
4,715,347	+		DZA65_RS21815	0.57	-1.2
4,715,347	+		DZA65_RS21815	0.57	+0.7
4,715,348	-		DZA65_RS21815	0.57	-1.0
4,715,348	-		DZA65_RS21815	0.57	+1.4
4,715,348	-		DZA65_RS21815	0.57	-2.1
4,715,348	-		DZA65_RS21815	0.57	+0.8
4,715,351	+		DZA65_RS21815	0.57	+1.0
4,715,351	+		DZA65_RS21815	0.57	+1.1
4,715,352	-		DZA65_RS21815	0.57	+0.0
4,715,352	-		DZA65_RS21815	0.57	-0.2
4,715,352	-		DZA65_RS21815	0.57	-0.0
4,715,352	-		DZA65_RS21815	0.57	-0.6