Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18075

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,886,311	+				-1.5
3,886,311	+				+0.5
3,886,311	+				-0.8
3,886,351	+				-1.7
3,886,351	+				-2.5
3,886,351	+				-0.5
3,886,354	+				-0.5
3,886,354	+				-0.9
3,886,355	-				-1.5
3,886,355	-				-0.2
3,886,355	-				-1.1
3,886,383	-				-0.5
3,886,542	+		DZA65_RS18070	0.18	+0.3
3,886,658	+		DZA65_RS18070	0.31	-1.2
3,886,658	+		DZA65_RS18070	0.31	-1.6
3,886,658	+		DZA65_RS18070	0.31	-0.7
3,886,659	-		DZA65_RS18070	0.31	+0.2
3,886,659	-		DZA65_RS18070	0.31	-0.9
3,886,688	+		DZA65_RS18070	0.34	-1.1
3,886,688	+		DZA65_RS18070	0.34	-1.7
3,886,688	+		DZA65_RS18070	0.34	-1.9
3,886,688	+		DZA65_RS18070	0.34	+0.1
3,886,688	+		DZA65_RS18070	0.34	-2.0
3,886,689	-		DZA65_RS18070	0.35	-1.8
3,886,689	-		DZA65_RS18070	0.35	+1.1
3,886,689	-		DZA65_RS18070	0.35	-1.5
3,886,689	-		DZA65_RS18070	0.35	-1.7
3,886,694	+		DZA65_RS18070	0.35	-1.2
3,886,694	+		DZA65_RS18070	0.35	+0.1
3,886,694	+				+0.5
3,886,694	+		DZA65_RS18070	0.35	+1.1
3,886,694	+		DZA65_RS18070	0.35	-0.9
3,886,694	+		DZA65_RS18070	0.35	-1.5
3,886,695	-		DZA65_RS18070	0.35	-1.1
3,886,695	-		DZA65_RS18070	0.35	-0.3
3,886,695	-		DZA65_RS18070	0.35	-1.8
3,886,770	+		DZA65_RS18070	0.43	-0.1
3,886,772	+		DZA65_RS18070	0.44	-1.2
3,886,772	+		DZA65_RS18070	0.44	-2.5
3,886,772	+		DZA65_RS18070	0.44	-2.2
3,886,772	+		DZA65_RS18070	0.44	-1.9
3,886,772	+		DZA65_RS18070	0.44	-0.5
3,886,772	+				-1.2
3,886,772	+		DZA65_RS18070	0.44	-2.0
3,886,773	-		DZA65_RS18070	0.44	+1.1
3,886,773	-		DZA65_RS18070	0.44	-1.2
3,886,773	-		DZA65_RS18070	0.44	-2.8
3,886,773	-		DZA65_RS18070	0.44	-0.9
3,886,773	-		DZA65_RS18070	0.44	-0.7
3,886,838	+		DZA65_RS18070	0.51	-2.4
3,886,839	-		DZA65_RS18070	0.51	+0.7
3,886,839	-		DZA65_RS18070	0.51	-0.7
3,886,839	-		DZA65_RS18070	0.51	-1.7
3,886,842	+		DZA65_RS18070	0.51	-1.5
3,886,842	+		DZA65_RS18070	0.51	-1.2
3,886,842	+		DZA65_RS18070	0.51	-0.9
3,886,842	+		DZA65_RS18070	0.51	-2.2
3,886,842	+		DZA65_RS18070	0.51	-1.1
3,886,842	+		DZA65_RS18070	0.51	+0.1
3,886,842	+		DZA65_RS18070	0.51	+2.4
3,886,842	+		DZA65_RS18070	0.51	-0.6
3,886,842	+		DZA65_RS18070	0.51	-1.2
3,886,843	-		DZA65_RS18070	0.51	-0.9
3,886,843	-		DZA65_RS18070	0.51	-1.7
3,886,843	-		DZA65_RS18070	0.51	-0.7
3,886,843	-		DZA65_RS18070	0.51	-2.9
3,886,843	-		DZA65_RS18070	0.51	-1.2
3,886,843	-		DZA65_RS18070	0.51	-0.1
3,886,843	-		DZA65_RS18070	0.51	-0.8
3,886,843	-		DZA65_RS18070	0.51	+0.9
3,886,907	+		DZA65_RS18070	0.59	+1.1
3,886,907	+		DZA65_RS18070	0.59	-2.1
3,886,907	+		DZA65_RS18070	0.59	+0.1
3,886,908	-		DZA65_RS18070	0.59	+0.5
3,886,908	-		DZA65_RS18070	0.59	+2.1
3,886,908	-		DZA65_RS18070	0.59	-0.5
3,886,908	-		DZA65_RS18070	0.59	-2.5
3,886,954	-		DZA65_RS18070	0.64	-1.1
3,887,036	+		DZA65_RS18070	0.73	+1.1
3,887,067	-		DZA65_RS18070	0.76	-0.5
3,887,183	+		DZA65_RS18070	0.89	-0.9
3,887,183	+		DZA65_RS18070	0.89	-1.2
3,887,183	+		DZA65_RS18070	0.89	+0.5
3,887,184	-		DZA65_RS18070	0.89	-0.9
3,887,184	-		DZA65_RS18070	0.89	-0.3
3,887,184	-		DZA65_RS18070	0.89	-1.4
3,887,202	+				-2.1
3,887,229	+				+0.4
3,887,229	+				-0.5
3,887,230	-				-1.9
3,887,230	-				-0.1
3,887,230	-				-1.5
3,887,235	+				-1.0
3,887,235	+				-2.2
3,887,235	+				-2.9
3,887,235	+				-0.1
3,887,236	-				-0.9
3,887,236	-				-0.5
3,887,236	-				-0.3
3,887,236	-				-1.1
3,887,236	-				-0.5
3,887,236	-				+0.1
3,887,258	-				-1.5
3,887,284	-				-0.2
3,887,289	+				-0.7
3,887,295	+				-0.3
3,887,384	+				-1.2
3,887,384	+				-0.3
3,887,385	-				-1.7
3,887,385	-				-0.8
3,887,574	+		DZA65_RS18075	0.20	-0.4
3,887,574	+		DZA65_RS18075	0.20	+1.1
3,887,574	+		DZA65_RS18075	0.20	-0.3
3,887,574	+		DZA65_RS18075	0.20	-2.2
3,887,575	-		DZA65_RS18075	0.20	+1.8
3,887,575	-		DZA65_RS18075	0.20	-0.5
3,887,575	-		DZA65_RS18075	0.20	-0.9
3,887,575	-		DZA65_RS18075	0.20	-3.5
3,887,575	-		DZA65_RS18075	0.20	-0.9
3,887,575	-		DZA65_RS18075	0.20	-1.1
3,887,575	-		DZA65_RS18075	0.20	-3.0
3,887,575	-		DZA65_RS18075	0.20	+0.1
3,887,575	-		DZA65_RS18075	0.20	-0.5
3,887,575	-		DZA65_RS18075	0.20	-1.9
3,887,575	-		DZA65_RS18075	0.20	-0.2
3,887,575	-		DZA65_RS18075	0.20	-0.5
3,887,657	+		DZA65_RS18075	0.26	-0.7
3,887,703	+		DZA65_RS18075	0.29	-0.5
3,887,704	-		DZA65_RS18075	0.29	-0.2
3,887,704	-		DZA65_RS18075	0.29	-0.6
3,887,911	+		DZA65_RS18075	0.43	-0.4
3,887,911	+		DZA65_RS18075	0.43	-0.5
3,887,954	+		DZA65_RS18075	0.46	-0.3
3,887,955	-		DZA65_RS18075	0.46	-1.5
3,887,979	+		DZA65_RS18075	0.48	-2.4
3,887,980	-		DZA65_RS18075	0.48	+0.1
3,887,980	-		DZA65_RS18075	0.48	+0.1
3,888,005	+		DZA65_RS18075	0.50	-0.5
3,888,005	+		DZA65_RS18075	0.50	-2.5
3,888,005	+		DZA65_RS18075	0.50	-1.5
3,888,005	+		DZA65_RS18075	0.50	-0.9
3,888,005	+		DZA65_RS18075	0.50	-1.6
3,888,005	+		DZA65_RS18075	0.50	-2.5
3,888,006	-		DZA65_RS18075	0.50	+0.8
3,888,006	-		DZA65_RS18075	0.50	-1.4
3,888,006	-		DZA65_RS18075	0.50	+0.1
3,888,006	-		DZA65_RS18075	0.50	+1.1
3,888,006	-		DZA65_RS18075	0.50	-1.9
3,888,172	+		DZA65_RS18075	0.62	-0.4
3,888,172	+		DZA65_RS18075	0.62	-1.5
3,888,173	-		DZA65_RS18075	0.62	-1.5
3,888,449	+		DZA65_RS18075	0.81	-0.5
3,888,699	-				-1.7
3,888,699	-				+0.3
3,888,700	+				+0.1
3,888,700	+				-0.9
3,888,700	+				-1.9
3,888,701	-				-0.3
3,888,701	-				-0.9
3,888,708	+				-1.9
3,888,708	+				-1.0
3,888,708	+				-0.2
3,888,708	+				-2.2
3,888,708	+				+0.1
3,888,708	+				-3.6
3,888,708	+				-1.0
3,888,708	+				-0.5
3,888,709	-				-1.4
3,888,709	-				+0.5
3,888,709	-				-1.2
3,888,709	-				+0.1
3,888,709	-				+0.7
3,888,709	-				+0.4
3,888,725	+				-1.3
3,888,726	-				+0.3
3,888,728	+				+0.4
3,888,755	+				-1.1
3,888,755	+				-0.7
3,888,756	-				+0.2
3,888,756	-				+0.9
3,888,756	-				+1.3
3,888,756	-				-0.2
3,888,790	+				-1.1
3,888,790	+				-0.8
3,888,790	+				-1.4
3,888,790	+				-0.8
3,888,790	+				-2.7
3,888,791	-				-2.1
3,888,791	-				-0.5
3,888,791	-				+1.7
3,888,791	-				-0.9
3,888,791	-				-1.5
3,888,791	-				+0.1
3,888,793	+				+0.0
3,888,794	-				+0.1
3,888,799	+				-0.5
3,888,799	+				-0.9
3,888,799	+				-0.8
3,888,800	-				-0.1
3,888,800	-				-1.2
3,888,815	+				+0.2
3,888,823	+				-1.7
3,888,823	+				+0.8
3,888,824	-				-2.2
3,888,848	-				+0.2
3,888,872	+				-0.6
3,888,873	-				-0.7
3,888,910	+				-0.3
3,888,910	+				+1.4
3,888,911	-				+0.1
3,888,911	-				-1.7
3,888,942	+				-0.4
3,888,942	+				+0.3
3,888,943	-				+0.3
3,888,945	+				+0.3
3,888,945	+				-0.3
3,888,946	-				-1.1
3,888,946	-				-0.4
3,888,946	-				+0.1
3,888,946	-				+0.3
3,888,946	-				+1.6
3,888,964	+				-0.6
3,888,964	+				+0.4
3,888,964	+				-0.2
3,888,965	-				+0.5
3,888,965	-				-2.9
3,888,987	-				+0.4
3,889,091	+				+1.6
3,889,091	+				-0.5
3,889,092	-				+0.8
3,889,092	-				-1.0
3,889,105	+				-1.1
3,889,105	+				-0.7
3,889,106	-				-0.9
3,889,110	+				-1.2
3,889,110	+				-1.8
3,889,110	+				+0.6
3,889,110	+				+0.8
3,889,111	-				+0.1
3,889,111	-				+1.1
3,889,111	-				+0.5
3,889,111	-				+0.8
3,889,111	-				-0.7
3,889,111	-				-1.7
3,889,111	-				+0.4
3,889,111	-				-0.7
3,889,118	-				-0.5
3,889,118	-				+1.2
3,889,118	-				-0.0
3,889,136	-				-1.0
3,889,150	+				+0.1
3,889,150	+				+0.1
3,889,150	+				+0.1
3,889,151	-				+0.4
3,889,199	+				+0.8
3,889,200	-				+1.4
3,889,200	-				+0.1
3,889,325	-		DZA65_RS18080	0.15	-0.9
3,889,348	+		DZA65_RS18080	0.18	-1.1
3,889,378	+		DZA65_RS18080	0.22	-2.2
3,889,379	-		DZA65_RS18080	0.22	-0.9
3,889,559	-		DZA65_RS18080	0.47	-1.5
3,889,559	-		DZA65_RS18080	0.47	-1.5
3,889,690	+		DZA65_RS18080	0.65	-0.9
3,889,690	+		DZA65_RS18080	0.65	+1.7
3,889,690	+		DZA65_RS18080	0.65	-0.5
3,889,709	-		DZA65_RS18080	0.67	-2.2