Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17150

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS17145 and DZA65_RS17150 overlap by 4 nucleotidesDZA65_RS17150 and DZA65_RS17155 are separated by 160 nucleotidesDZA65_RS17155 and DZA65_RS17160 are separated by 15 nucleotides DZA65_RS17145: DZA65_RS17145 - polynucleotide adenylyltransferase PcnB, at 3,703,398 to 3,704,801 _RS17145 DZA65_RS17150: DZA65_RS17150 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,704,798 to 3,705,286 _RS17150 DZA65_RS17155: DZA65_RS17155 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,705,447 to 3,706,241 _RS17155 DZA65_RS17160: DZA65_RS17160 - pantoate--beta-alanine ligase, at 3,706,257 to 3,707,111 _RS17160 Position (kb) 3704 3705 3706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3703.832 kb on + strandat 3703.833 kb on - strand, within DZA65_RS17145at 3703.911 kb on + strand, within DZA65_RS17145at 3703.941 kb on + strand, within DZA65_RS17145at 3704.190 kb on + strand, within DZA65_RS17145at 3704.190 kb on + strand, within DZA65_RS17145at 3704.208 kb on + strand, within DZA65_RS17145at 3704.248 kb on - strand, within DZA65_RS17145at 3704.424 kb on + strand, within DZA65_RS17145at 3704.444 kb on - strand, within DZA65_RS17145at 3704.501 kb on + strand, within DZA65_RS17145at 3704.571 kb on - strand, within DZA65_RS17145at 3704.650 kb on + strand, within DZA65_RS17145at 3704.651 kb on - strand, within DZA65_RS17145at 3704.651 kb on - strand, within DZA65_RS17145at 3704.651 kb on - strand, within DZA65_RS17145at 3704.810 kb on + strandat 3705.335 kb on - strandat 3705.362 kb on - strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.395 kb on + strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.396 kb on - strandat 3705.398 kb on + strandat 3705.398 kb on + strandat 3705.398 kb on + strandat 3705.398 kb on + strandat 3705.398 kb on + strandat 3705.398 kb on + strandat 3705.414 kb on + strandat 3705.446 kb on + strandat 3705.446 kb on + strandat 3705.447 kb on - strandat 3705.447 kb on - strandat 3705.447 kb on - strandat 3705.519 kb on + strandat 3705.519 kb on + strandat 3705.520 kb on - strandat 3705.546 kb on + strand, within DZA65_RS17155at 3705.546 kb on + strand, within DZA65_RS17155at 3705.547 kb on - strand, within DZA65_RS17155at 3705.591 kb on - strand, within DZA65_RS17155at 3705.598 kb on + strand, within DZA65_RS17155at 3705.638 kb on + strand, within DZA65_RS17155at 3705.639 kb on - strand, within DZA65_RS17155at 3705.646 kb on - strand, within DZA65_RS17155at 3705.661 kb on + strand, within DZA65_RS17155at 3705.708 kb on - strand, within DZA65_RS17155at 3705.773 kb on + strand, within DZA65_RS17155at 3705.773 kb on + strand, within DZA65_RS17155at 3705.774 kb on - strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.784 kb on + strand, within DZA65_RS17155at 3705.785 kb on - strand, within DZA65_RS17155at 3705.785 kb on - strand, within DZA65_RS17155at 3705.785 kb on - strand, within DZA65_RS17155at 3705.785 kb on - strand, within DZA65_RS17155at 3705.882 kb on - strand, within DZA65_RS17155at 3705.882 kb on - strand, within DZA65_RS17155at 3705.882 kb on - strand, within DZA65_RS17155at 3705.882 kb on - strand, within DZA65_RS17155at 3705.896 kb on + strand, within DZA65_RS17155at 3705.976 kb on + strand, within DZA65_RS17155at 3706.121 kb on + strand, within DZA65_RS17155at 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.185 kb on + strandat 3706.186 kb on - strandat 3706.186 kb on - strandat 3706.186 kb on - strandat 3706.186 kb on - strandat 3706.227 kb on + strandat 3706.227 kb on + strandat 3706.228 kb on - strandat 3706.228 kb on - strandat 3706.239 kb on + strandat 3706.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,703,832 + +0.0
3,703,833 - DZA65_RS17145 0.31 +0.8
3,703,911 + DZA65_RS17145 0.37 +0.7
3,703,941 + DZA65_RS17145 0.39 -1.2
3,704,190 + DZA65_RS17145 0.56 -0.3
3,704,190 + DZA65_RS17145 0.56 -1.0
3,704,208 + DZA65_RS17145 0.58 +1.4
3,704,248 - DZA65_RS17145 0.61 -1.0
3,704,424 + DZA65_RS17145 0.73 +1.0
3,704,444 - DZA65_RS17145 0.75 -0.5
3,704,501 + DZA65_RS17145 0.79 +0.5
3,704,571 - DZA65_RS17145 0.84 -0.5
3,704,650 + DZA65_RS17145 0.89 +0.7
3,704,651 - DZA65_RS17145 0.89 -2.3
3,704,651 - DZA65_RS17145 0.89 +0.0
3,704,651 - DZA65_RS17145 0.89 +0.3
3,704,810 + -1.2
3,705,335 - -2.4
3,705,362 - +0.0
3,705,395 + -0.3
3,705,395 + +0.5
3,705,395 + +1.8
3,705,395 + -2.7
3,705,395 + +0.0
3,705,395 + +0.6
3,705,395 + -1.8
3,705,395 + -1.0
3,705,395 + -1.0
3,705,395 + -1.0
3,705,395 + -0.5
3,705,395 + +0.4
3,705,396 - +0.0
3,705,396 - -3.9
3,705,396 - -2.4
3,705,396 - -2.1
3,705,396 - -0.8
3,705,396 - -2.8
3,705,396 - -3.1
3,705,396 - -2.3
3,705,398 + -1.1
3,705,398 + -0.2
3,705,398 + -0.7
3,705,398 + +1.0
3,705,398 + +0.0
3,705,398 + -1.0
3,705,414 + -1.5
3,705,446 + -1.1
3,705,446 + -2.0
3,705,447 - -1.7
3,705,447 - -1.3
3,705,447 - -3.1
3,705,519 + +1.0
3,705,519 + +0.0
3,705,520 - -2.4
3,705,546 + DZA65_RS17155 0.12 -2.9
3,705,546 + DZA65_RS17155 0.12 -1.3
3,705,547 - DZA65_RS17155 0.13 -1.1
3,705,591 - DZA65_RS17155 0.18 -1.3
3,705,598 + DZA65_RS17155 0.19 -3.4
3,705,638 + DZA65_RS17155 0.24 -1.4
3,705,639 - DZA65_RS17155 0.24 -2.8
3,705,646 - DZA65_RS17155 0.25 -2.5
3,705,661 + DZA65_RS17155 0.27 -2.9
3,705,708 - DZA65_RS17155 0.33 -2.1
3,705,773 + DZA65_RS17155 0.41 -1.9
3,705,773 + DZA65_RS17155 0.41 -0.7
3,705,774 - DZA65_RS17155 0.41 -2.4
3,705,784 + DZA65_RS17155 0.42 -2.6
3,705,784 + DZA65_RS17155 0.42 -1.3
3,705,784 + DZA65_RS17155 0.42 -1.5
3,705,784 + DZA65_RS17155 0.42 -3.1
3,705,784 + DZA65_RS17155 0.42 -2.1
3,705,784 + DZA65_RS17155 0.42 -2.9
3,705,785 - DZA65_RS17155 0.43 -1.5
3,705,785 - DZA65_RS17155 0.43 -3.3
3,705,785 - DZA65_RS17155 0.43 -0.5
3,705,785 - DZA65_RS17155 0.43 -0.7
3,705,882 - DZA65_RS17155 0.55 -1.0
3,705,882 - DZA65_RS17155 0.55 -2.8
3,705,882 - DZA65_RS17155 0.55 -1.4
3,705,882 - DZA65_RS17155 0.55 -1.5
3,705,896 + DZA65_RS17155 0.56 +0.0
3,705,976 + DZA65_RS17155 0.67 -3.1
3,706,121 + DZA65_RS17155 0.85 -3.0
3,706,185 + -3.0
3,706,185 + -1.1
3,706,185 + -0.5
3,706,185 + -2.3
3,706,185 + -2.0
3,706,185 + +1.0
3,706,185 + -0.5
3,706,185 + -1.8
3,706,186 - -1.1
3,706,186 - -0.4
3,706,186 - -1.5
3,706,186 - -2.3
3,706,227 + +0.0
3,706,227 + -2.4
3,706,228 - -2.1
3,706,228 - -1.3
3,706,239 + -0.4
3,706,240 - +0.6

Or see this region's nucleotide sequence