Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15290

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,316,488	+		DZA65_RS15285	0.60	-1.1
3,316,564	-		DZA65_RS15285	0.64	-0.1
3,316,593	-				+0.9
3,316,596	+				+0.3
3,316,597	-		DZA65_RS15285	0.65	+1.5
3,316,630	+		DZA65_RS15285	0.67	-0.1
3,316,630	+		DZA65_RS15285	0.67	+0.1
3,316,631	-		DZA65_RS15285	0.67	+0.2
3,316,739	-		DZA65_RS15285	0.72	+0.7
3,316,845	-		DZA65_RS15285	0.77	+0.3
3,317,070	-		DZA65_RS15285	0.88	+0.9
3,317,181	-				+0.1
3,317,191	-				+1.3
3,317,242	+				+0.1
3,317,291	+				-0.3
3,317,374	+				-1.1
3,317,375	-				-0.3
3,317,375	-				-0.5
3,317,375	-				-1.0
3,317,375	-				+0.1
3,317,425	+				-0.8
3,317,436	+				+0.5
3,317,437	-				+0.9
3,317,539	-		DZA65_RS15290	0.15	-2.6
3,317,690	+		DZA65_RS15290	0.40	-2.4
3,317,690	+		DZA65_RS15290	0.40	-1.7
3,317,690	+		DZA65_RS15290	0.40	-1.5
3,317,690	+		DZA65_RS15290	0.40	-0.9
3,317,691	-		DZA65_RS15290	0.40	-1.2
3,317,691	-		DZA65_RS15290	0.40	-2.1
3,317,691	-		DZA65_RS15290	0.40	+0.1
3,317,691	-		DZA65_RS15290	0.40	-0.1
3,317,691	-		DZA65_RS15290	0.40	-1.1
3,317,736	+		DZA65_RS15290	0.47	+1.5
3,317,739	+		DZA65_RS15290	0.47	-0.1
3,317,927	+		DZA65_RS15290	0.78	-2.3
3,317,927	+		DZA65_RS15290	0.78	+1.6
3,317,927	+		DZA65_RS15290	0.78	-1.1
3,317,927	+		DZA65_RS15290	0.78	-0.7
3,317,927	+		DZA65_RS15290	0.78	-0.1
3,317,928	-		DZA65_RS15290	0.78	+0.1
3,317,928	-		DZA65_RS15290	0.78	-0.4
3,317,928	-		DZA65_RS15290	0.78	-1.5
3,317,928	-		DZA65_RS15290	0.78	-0.7
3,317,928	-		DZA65_RS15290	0.78	+0.2
3,317,928	-		DZA65_RS15290	0.78	+0.3
3,317,928	-		DZA65_RS15290	0.78	-1.2
3,317,937	+		DZA65_RS15290	0.80	+0.4
3,317,937	+		DZA65_RS15290	0.80	+0.1
3,317,937	+		DZA65_RS15290	0.80	-3.0
3,317,937	+		DZA65_RS15290	0.80	-1.6
3,317,937	+		DZA65_RS15290	0.80	-0.3
3,317,937	+		DZA65_RS15290	0.80	-1.0
3,317,937	+		DZA65_RS15290	0.80	+0.1
3,317,937	+		DZA65_RS15290	0.80	+0.0
3,317,938	-		DZA65_RS15290	0.80	-1.0
3,317,938	-		DZA65_RS15290	0.80	+1.7
3,317,938	-		DZA65_RS15290	0.80	-0.5
3,317,938	-		DZA65_RS15290	0.80	+0.1
3,317,941	+		DZA65_RS15290	0.80	-0.1
3,317,942	-		DZA65_RS15290	0.80	-0.7
3,317,995	+		DZA65_RS15290	0.89	-0.3
3,317,996	-		DZA65_RS15290	0.89	-0.1
3,318,123	-				-0.3
3,318,123	-				-1.7
3,318,123	-				-0.9
3,318,123	-				+0.2
3,318,130	+				-0.2
3,318,130	+				-0.4
3,318,130	+				+0.9
3,318,130	+				-0.5
3,318,130	+				+0.5
3,318,130	+				-0.8
3,318,130	+				+0.9
3,318,130	+				-1.6
3,318,130	+				+0.0
3,318,130	+				-0.6
3,318,131	-				-1.2
3,318,131	-				-1.0
3,318,131	-				-0.1
3,318,131	-				-0.7
3,318,131	-				-1.0
3,318,131	-				+0.9
3,318,131	-				+0.3
3,318,131	-				+0.9
3,318,142	-				-1.1
3,318,142	-				+0.9
3,318,142	-				+0.7
3,318,149	-				+0.3
3,318,153	+				+0.3
3,318,178	+				-1.1
3,318,288	+		DZA65_RS15295	0.25	-0.1
3,318,288	+		DZA65_RS15295	0.25	+0.1
3,318,288	+		DZA65_RS15295	0.25	+0.7
3,318,288	+		DZA65_RS15295	0.25	+0.5
3,318,288	+		DZA65_RS15295	0.25	+1.2
3,318,288	+		DZA65_RS15295	0.25	+0.9
3,318,288	+		DZA65_RS15295	0.25	-0.1
3,318,289	-		DZA65_RS15295	0.25	-0.6
3,318,289	-		DZA65_RS15295	0.25	-0.9
3,318,289	-		DZA65_RS15295	0.25	+0.9
3,318,289	-		DZA65_RS15295	0.25	-1.9
3,318,289	-		DZA65_RS15295	0.25	+0.5
3,318,289	-		DZA65_RS15295	0.25	+0.2
3,318,289	-		DZA65_RS15295	0.25	-0.8
3,318,292	+		DZA65_RS15295	0.25	-0.9
3,318,292	+		DZA65_RS15295	0.25	-1.7
3,318,292	+		DZA65_RS15295	0.25	+0.3
3,318,292	+		DZA65_RS15295	0.25	-2.0
3,318,293	-		DZA65_RS15295	0.26	+0.4
3,318,293	-		DZA65_RS15295	0.26	-1.9
3,318,293	-		DZA65_RS15295	0.26	-0.5
3,318,293	-		DZA65_RS15295	0.26	-0.2
3,318,293	-		DZA65_RS15295	0.26	-0.1
3,318,293	-		DZA65_RS15295	0.26	+0.4
3,318,293	-		DZA65_RS15295	0.26	-0.4
3,318,382	-		DZA65_RS15295	0.42	+0.8
3,318,382	-		DZA65_RS15295	0.42	-0.2
3,318,382	-		DZA65_RS15295	0.42	-0.1
3,318,404	+		DZA65_RS15295	0.46	-0.3
3,318,404	+		DZA65_RS15295	0.46	-0.7
3,318,490	+		DZA65_RS15295	0.61	-1.4
3,318,506	-		DZA65_RS15295	0.64	+0.0
3,318,589	+		DZA65_RS15295	0.79	-1.0
3,318,590	-		DZA65_RS15295	0.79	-0.3
3,318,590	-		DZA65_RS15295	0.79	-0.1
3,318,605	+		DZA65_RS15295	0.82	+0.2
3,318,606	-		DZA65_RS15295	0.82	+0.3
3,318,709	+				+1.5
3,318,710	-				+0.2
3,318,710	-				-2.3
3,318,710	-				+1.3
3,318,727	+				+0.3
3,318,727	+				-0.3
3,318,727	+				-1.7
3,318,727	+				-2.6
3,318,728	-				+0.1
3,318,741	-				-0.5
3,318,742	+				+0.0
3,318,742	+				+0.1
3,318,742	+				-0.4
3,318,742	+				-1.7
3,318,742	+				+1.3
3,318,742	+				+0.0
3,318,742	+				+0.5
3,318,742	+				+0.1
3,318,742	+				-0.9
3,318,742	+				-2.1
3,318,742	+				-1.0
3,318,743	-				+2.1
3,318,743	-				-0.2
3,318,743	-				+0.5
3,318,743	-				+1.7
3,318,743	-				-0.6
3,318,743	-				-0.4
3,318,746	-				-0.7
3,318,756	+				-0.9
3,318,756	+				+0.1
3,318,757	-				-0.4
3,318,757	-				+1.5
3,318,778	-				+0.6
3,318,827	-				+0.0
3,318,837	+				-0.1
3,318,850	+				-1.2
3,318,850	+				+0.3
3,318,850	+				-1.2
3,318,854	+				+0.9
3,318,854	+				-0.9
3,318,854	+				-0.4
3,318,855	-				+0.9
3,318,855	-				+2.5
3,318,855	-				-0.1
3,318,855	-				-0.6
3,318,855	-				-1.3
3,318,855	-				-0.6
3,318,855	-				+0.9
3,318,876	+				-0.9
3,318,963	+				-0.3
3,318,963	+				-0.9
3,318,963	+				-0.6
3,318,963	+				-0.4
3,318,963	+				-1.5
3,318,963	+				+0.1
3,318,963	+				+3.1
3,318,963	+				-0.4
3,318,963	+				+0.1
3,318,964	-				-0.4
3,318,964	-				-0.6
3,318,964	-				-0.1
3,318,964	-				-0.3
3,318,964	-				-0.7
3,318,964	-				-1.2
3,318,964	-				+0.2
3,318,964	-				+0.9
3,318,964	-				+0.1
3,318,964	-				+0.2
3,318,964	-				-0.3
3,318,966	+				-0.7
3,318,967	-				+0.0
3,318,967	-				-0.7
3,318,967	-				-3.3
3,318,967	-				-0.4
3,319,021	+		DZA65_RS15300	0.11	-0.6
3,319,021	+		DZA65_RS15300	0.11	-0.1
3,319,021	+		DZA65_RS15300	0.11	+0.9
3,319,021	+		DZA65_RS15300	0.11	+0.9
3,319,021	+		DZA65_RS15300	0.11	-1.4
3,319,022	-		DZA65_RS15300	0.11	+1.4
3,319,022	-		DZA65_RS15300	0.11	-0.7
3,319,022	-		DZA65_RS15300	0.11	+1.6
3,319,022	-		DZA65_RS15300	0.11	-0.4
3,319,022	-		DZA65_RS15300	0.11	-0.3
3,319,022	-		DZA65_RS15300	0.11	-0.4
3,319,022	-		DZA65_RS15300	0.11	-0.3
3,319,022	-		DZA65_RS15300	0.11	-0.4
3,319,022	-		DZA65_RS15300	0.11	-1.1
3,319,022	-		DZA65_RS15300	0.11	-0.1
3,319,022	-		DZA65_RS15300	0.11	+0.3
3,319,022	-		DZA65_RS15300	0.11	-0.4
3,319,026	+		DZA65_RS15300	0.12	-1.1
3,319,026	+		DZA65_RS15300	0.12	-1.3
3,319,026	+		DZA65_RS15300	0.12	+0.3