Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12190

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,604,347	+		DZA65_RS12185	0.45	-1.4
2,604,348	-		DZA65_RS12185	0.45	-1.8
2,604,348	-		DZA65_RS12185	0.45	-1.3
2,604,348	-		DZA65_RS12185	0.45	+0.2
2,604,510	+		DZA65_RS12185	0.62	-1.0
2,604,510	+		DZA65_RS12185	0.62	-1.2
2,604,517	+		DZA65_RS12185	0.62	-0.8
2,604,518	-		DZA65_RS12185	0.63	-0.2
2,604,560	+		DZA65_RS12185	0.67	+1.2
2,604,591	-		DZA65_RS12185	0.70	+0.2
2,604,711	+		DZA65_RS12185	0.82	-1.8
2,604,711	+		DZA65_RS12185	0.82	+0.2
2,604,711	+		DZA65_RS12185	0.82	+0.3
2,604,711	+		DZA65_RS12185	0.82	-1.4
2,604,712	-		DZA65_RS12185	0.82	+2.9
2,604,712	-		DZA65_RS12185	0.82	+0.3
2,604,743	-				+2.6
2,604,743	-		DZA65_RS12185	0.85	-0.5
2,604,748	-		DZA65_RS12185	0.86	+0.9
2,604,787	+				-1.3
2,604,799	+				-0.8
2,604,799	+				-0.6
2,604,799	+				-1.4
2,604,799	+				+0.6
2,604,799	+				+0.6
2,604,799	+				-0.3
2,604,799	+				-1.0
2,604,800	-				-2.0
2,604,800	-				+0.4
2,604,800	-				-1.4
2,604,800	-				+0.2
2,604,800	-				-2.0
2,604,800	-				-1.8
2,604,800	-				-1.0
2,604,800	-				-2.4
2,604,802	-				+0.2
2,604,871	-				-0.0
2,604,877	+				+1.0
2,604,877	+				+2.6
2,604,890	-				-0.8
2,604,910	-				-0.7
2,604,910	-				+1.0
2,604,935	+				-1.0
2,604,936	-				-0.8
2,604,940	+				-1.8
2,604,940	+				+0.6
2,604,940	+				-1.4
2,604,941	-				+0.1
2,604,941	-				+0.0
2,604,941	-				+0.1
2,604,941	-				+0.3
2,605,006	+				+0.4
2,605,006	+				-0.8
2,605,017	+				-0.2
2,605,017	+				+1.1
2,605,054	+				-1.2
2,605,055	-				+2.7
2,605,061	+				-0.9
2,605,061	+				-0.7
2,605,061	+				+0.8
2,605,061	+				-0.8
2,605,062	-				-0.6
2,605,062	-				+0.9
2,605,141	+				-1.6
2,605,141	+				+1.2
2,605,142	-				+0.2
2,605,142	-				+1.2
2,605,142	-				+0.6
2,605,218	+				-0.0
2,605,218	+				+0.0
2,605,218	+				+0.1
2,605,219	-				-0.9
2,605,219	-				-0.8
2,605,219	-				-0.5
2,605,219	-				-0.5
2,605,219	-				-0.5
2,605,219	-				-2.2
2,605,253	+				+0.6
2,605,253	+				+0.2
2,605,253	+				-1.0
2,605,254	-				-0.0
2,605,254	-				-0.4
2,605,291	+				-1.0
2,605,291	+				-1.4
2,605,428	+		DZA65_RS12190	0.26	+0.2
2,605,428	+		DZA65_RS12190	0.26	-1.0
2,605,429	-		DZA65_RS12190	0.26	-0.1
2,605,429	-		DZA65_RS12190	0.26	-0.2
2,605,429	-		DZA65_RS12190	0.26	-2.5
2,605,479	-		DZA65_RS12190	0.34	-0.4
2,605,525	+		DZA65_RS12190	0.41	-0.8
2,605,526	-		DZA65_RS12190	0.41	-0.2
2,605,526	-		DZA65_RS12190	0.41	-0.8
2,605,526	-		DZA65_RS12190	0.41	-1.0
2,605,526	-		DZA65_RS12190	0.41	-0.3
2,605,526	-		DZA65_RS12190	0.41	+0.1
2,605,526	-		DZA65_RS12190	0.41	+0.5
2,605,592	+		DZA65_RS12190	0.51	+1.2
2,605,592	+		DZA65_RS12190	0.51	-2.8
2,605,592	+				+3.4
2,605,593	-				+2.2
2,605,593	-		DZA65_RS12190	0.51	-0.8
2,605,593	-		DZA65_RS12190	0.51	+0.0
2,605,595	-		DZA65_RS12190	0.52	-0.9
2,605,595	-		DZA65_RS12190	0.52	-0.0
2,605,645	+		DZA65_RS12190	0.60	-2.9
2,605,645	+		DZA65_RS12190	0.60	-1.0
2,605,646	-		DZA65_RS12190	0.60	+0.6
2,605,646	-		DZA65_RS12190	0.60	+0.6
2,605,646	-		DZA65_RS12190	0.60	-0.1
2,605,646	-		DZA65_RS12190	0.60	+0.1
2,605,646	-		DZA65_RS12190	0.60	-1.0
2,605,646	-		DZA65_RS12190	0.60	-0.9
2,605,646	-		DZA65_RS12190	0.60	-1.6
2,605,646	-		DZA65_RS12190	0.60	-2.9
2,605,649	+		DZA65_RS12190	0.60	-0.3
2,605,649	+		DZA65_RS12190	0.60	-0.8
2,605,649	+		DZA65_RS12190	0.60	-0.7
2,605,649	+		DZA65_RS12190	0.60	-0.8
2,605,649	+		DZA65_RS12190	0.60	-1.4
2,605,649	+		DZA65_RS12190	0.60	-0.4
2,605,649	+		DZA65_RS12190	0.60	+0.2
2,605,649	+		DZA65_RS12190	0.60	-0.8
2,605,649	+		DZA65_RS12190	0.60	-2.0
2,605,650	-		DZA65_RS12190	0.60	-0.8
2,605,650	-		DZA65_RS12190	0.60	+0.1
2,605,650	-		DZA65_RS12190	0.60	-1.2
2,605,650	-		DZA65_RS12190	0.60	+0.2
2,605,650	-		DZA65_RS12190	0.60	+1.0
2,605,650	-		DZA65_RS12190	0.60	-0.2
2,605,650	-		DZA65_RS12190	0.60	-1.2
2,605,650	-		DZA65_RS12190	0.60	-0.9
2,605,650	-		DZA65_RS12190	0.60	-1.4
2,605,650	-		DZA65_RS12190	0.60	+0.6
2,605,727	+		DZA65_RS12190	0.72	+0.8
2,605,727	+		DZA65_RS12190	0.72	-0.6
2,605,727	+		DZA65_RS12190	0.72	-0.1
2,605,728	-		DZA65_RS12190	0.72	-1.4
2,605,728	-		DZA65_RS12190	0.72	+0.8
2,605,728	-		DZA65_RS12190	0.72	-0.4
2,605,728	-		DZA65_RS12190	0.72	-2.2
2,605,746	+		DZA65_RS12190	0.75	-0.7
2,605,747	-		DZA65_RS12190	0.75	-1.0
2,605,747	-		DZA65_RS12190	0.75	+0.1
2,605,828	-		DZA65_RS12190	0.88	-0.8
2,605,859	+				-0.8
2,605,860	-				+0.2
2,605,890	+				-0.5
2,605,890	+				-0.3
2,605,890	+				-0.1
2,605,890	+				+1.3
2,605,891	-				-0.0
2,605,892	+				-0.0
2,605,892	+				-1.0
2,605,893	-				+0.6
2,605,893	-				-0.9
2,605,893	-				-1.2
2,605,893	-				+1.3
2,605,893	-				-1.4
2,605,893	-				-1.1
2,605,893	-				-0.9
2,605,933	+				+0.5
2,605,934	-				-2.0
2,605,938	+				-0.7
2,605,938	+				-0.3
2,605,938	+				-1.1
2,605,939	-				-0.9
2,605,997	+				-0.1
2,605,998	-				+0.5
2,605,998	-				-0.6
2,606,176	+		DZA65_RS12195	0.16	-0.1
2,606,176	+		DZA65_RS12195	0.16	+2.3
2,606,364	+		DZA65_RS12195	0.29	+0.4
2,606,364	+		DZA65_RS12195	0.29	-2.2
2,606,364	+		DZA65_RS12195	0.29	-0.3
2,606,364	+		DZA65_RS12195	0.29	-0.2
2,606,365	-		DZA65_RS12195	0.29	-0.2
2,606,387	-		DZA65_RS12195	0.31	+0.1
2,606,412	-		DZA65_RS12195	0.32	+0.4
2,606,425	+		DZA65_RS12195	0.33	-1.8
2,606,425	+		DZA65_RS12195	0.33	-1.2
2,606,426	-		DZA65_RS12195	0.33	+0.2
2,606,452	+		DZA65_RS12195	0.35	-2.0
2,606,613	+		DZA65_RS12195	0.46	-1.6
2,606,901	+		DZA65_RS12195	0.66	-0.6