Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11350

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,412,385	-				-1.5
2,412,385	-				+0.3
2,412,385	-				-1.4
2,412,386	+				-0.5
2,412,386	+				+0.7
2,412,455	+				-0.9
2,412,456	-				+0.5
2,412,456	-				+0.8
2,412,482	-				-1.8
2,412,596	-		DZA65_RS11345	0.15	-2.1
2,412,626	+		DZA65_RS11345	0.20	+0.7
2,412,626	+		DZA65_RS11345	0.20	+0.1
2,412,626	+		DZA65_RS11345	0.20	+0.9
2,412,626	+		DZA65_RS11345	0.20	+0.2
2,412,627	-		DZA65_RS11345	0.21	-0.9
2,412,660	+		DZA65_RS11345	0.27	-2.1
2,412,661	-		DZA65_RS11345	0.27	-1.5
2,412,661	-		DZA65_RS11345	0.27	-1.8
2,412,661	-		DZA65_RS11345	0.27	-0.5
2,412,721	+		DZA65_RS11345	0.38	+0.1
2,412,721	+		DZA65_RS11345	0.38	-0.8
2,412,721	+		DZA65_RS11345	0.38	+0.1
2,412,721	+		DZA65_RS11345	0.38	-1.7
2,412,722	-		DZA65_RS11345	0.39	-0.4
2,412,722	-		DZA65_RS11345	0.39	+0.7
2,412,722	-		DZA65_RS11345	0.39	+0.5
2,412,722	-		DZA65_RS11345	0.39	+0.9
2,412,722	-		DZA65_RS11345	0.39	-0.5
2,412,722	-		DZA65_RS11345	0.39	+0.6
2,412,722	-		DZA65_RS11345	0.39	-0.7
2,412,722	-				+1.0
2,412,722	-		DZA65_RS11345	0.39	-0.8
2,412,831	+		DZA65_RS11345	0.59	-0.2
2,412,831	+		DZA65_RS11345	0.59	-0.3
2,412,831	+		DZA65_RS11345	0.59	-0.5
2,412,831	+		DZA65_RS11345	0.59	-1.6
2,412,831	+		DZA65_RS11345	0.59	-0.6
2,412,831	+		DZA65_RS11345	0.59	-1.2
2,412,832	-		DZA65_RS11345	0.60	-2.6
2,412,832	-		DZA65_RS11345	0.60	+0.0
2,412,832	-		DZA65_RS11345	0.60	+0.2
2,412,832	-		DZA65_RS11345	0.60	+0.1
2,412,898	-		DZA65_RS11345	0.72	-0.2
2,412,920	-		DZA65_RS11345	0.76	+0.7
2,412,929	-		DZA65_RS11345	0.78	+0.2
2,412,963	-		DZA65_RS11345	0.85	-0.1
2,412,963	-		DZA65_RS11345	0.85	-2.1
2,412,978	+		DZA65_RS11345	0.87	-1.1
2,412,979	-		DZA65_RS11345	0.88	-0.4
2,412,979	-		DZA65_RS11345	0.88	-0.8
2,412,979	-		DZA65_RS11345	0.88	-1.2
2,412,979	-		DZA65_RS11345	0.88	-0.3
2,412,979	-		DZA65_RS11345	0.88	+0.9
2,413,034	+				-0.8
2,413,090	+				+0.2
2,413,091	-				+0.0
2,413,091	-				-0.4
2,413,095	+				-0.5
2,413,096	-				+1.2
2,413,147	+				+0.5
2,413,147	+				+1.2
2,413,147	+				+0.4
2,413,147	+				+0.7
2,413,147	+				+1.2
2,413,147	+				+0.3
2,413,148	-				-1.0
2,413,148	-				+0.2
2,413,152	+				-0.3
2,413,152	+				-0.7
2,413,152	+				+0.8
2,413,153	-				-2.4
2,413,153	-				-0.0
2,413,153	-				-0.5
2,413,179	+				+0.9
2,413,179	+				-0.3
2,413,180	-				-0.1
2,413,181	+				+1.2
2,413,181	+				-2.6
2,413,213	+				-0.7
2,413,213	+				+0.2
2,413,226	-				+0.4
2,413,267	+				+0.1
2,413,267	+				-0.8
2,413,267	+				-0.4
2,413,267	+				-1.3
2,413,268	-				-1.3
2,413,268	-				+0.4
2,413,278	+				+1.5
2,413,300	+				-0.7
2,413,301	-				-0.3
2,413,326	+				-0.8
2,413,327	-				-0.1
2,413,327	-				+0.7
2,413,327	-				+0.7
2,413,356	+				-0.3
2,413,356	+				-0.7
2,413,358	+				+1.8
2,413,358	+				-0.3
2,413,358	+				+0.8
2,413,371	+				-2.9
2,413,372	-				-0.2
2,413,372	-				+0.5
2,413,441	+				+0.1
2,413,441	+				-1.1
2,413,502	+				-0.5
2,413,502	+				-0.9
2,413,502	+				-2.6
2,413,502	+				-0.2
2,413,503	-				-0.3
2,413,503	-				-2.6
2,413,613	+		DZA65_RS11350	0.12	+0.3
2,413,614	-		DZA65_RS11350	0.12	-0.1
2,413,614	-		DZA65_RS11350	0.12	-0.5
2,413,629	+		DZA65_RS11350	0.13	+0.1
2,413,630	-		DZA65_RS11350	0.13	-0.0
2,413,639	+		DZA65_RS11350	0.14	+0.4
2,413,639	+		DZA65_RS11350	0.14	-0.9
2,413,639	+		DZA65_RS11350	0.14	-0.5
2,413,640	-		DZA65_RS11350	0.14	+0.3
2,413,648	-		DZA65_RS11350	0.14	+0.3
2,413,800	+		DZA65_RS11350	0.22	-0.7
2,413,800	+		DZA65_RS11350	0.22	-1.8
2,413,801	-		DZA65_RS11350	0.22	-0.3
2,413,837	+		DZA65_RS11350	0.24	-0.7
2,413,837	+		DZA65_RS11350	0.24	-0.2
2,413,838	-		DZA65_RS11350	0.24	+1.3
2,413,838	-		DZA65_RS11350	0.24	+0.2
2,413,885	+		DZA65_RS11350	0.26	-1.2
2,413,888	-		DZA65_RS11350	0.26	+0.1
2,413,888	-		DZA65_RS11350	0.26	+1.7
2,413,888	-		DZA65_RS11350	0.26	+0.5
2,413,888	-		DZA65_RS11350	0.26	+0.1
2,413,957	+		DZA65_RS11350	0.30	-0.1
2,413,957	+		DZA65_RS11350	0.30	+1.0
2,413,957	+		DZA65_RS11350	0.30	-1.1
2,413,957	+		DZA65_RS11350	0.30	+0.5
2,413,957	+		DZA65_RS11350	0.30	+0.2
2,413,957	+		DZA65_RS11350	0.30	-1.1
2,413,957	+		DZA65_RS11350	0.30	-0.2
2,413,957	+		DZA65_RS11350	0.30	-1.3
2,413,957	+		DZA65_RS11350	0.30	+0.7
2,413,958	-		DZA65_RS11350	0.30	+0.8
2,413,958	-		DZA65_RS11350	0.30	+1.1
2,413,958	-		DZA65_RS11350	0.30	-0.3
2,413,958	-		DZA65_RS11350	0.30	-0.3
2,413,958	-		DZA65_RS11350	0.30	+1.0
2,413,958	-		DZA65_RS11350	0.30	-1.8
2,413,958	-		DZA65_RS11350	0.30	+1.7
2,413,958	-		DZA65_RS11350	0.30	-0.3
2,413,958	-		DZA65_RS11350	0.30	-0.0
2,413,958	-		DZA65_RS11350	0.30	-1.1
2,413,958	-		DZA65_RS11350	0.30	-0.6
2,413,959	+		DZA65_RS11350	0.30	+0.2
2,413,959	+		DZA65_RS11350	0.30	-1.1
2,413,959	+		DZA65_RS11350	0.30	+0.3
2,413,975	-		DZA65_RS11350	0.31	+1.2
2,413,975	-		DZA65_RS11350	0.31	-0.2
2,413,983	-		DZA65_RS11350	0.31	-0.6
2,413,983	-		DZA65_RS11350	0.31	-0.9
2,414,177	+		DZA65_RS11350	0.41	+0.8
2,414,177	+		DZA65_RS11350	0.41	+0.1
2,414,177	+		DZA65_RS11350	0.41	-0.1
2,414,177	+		DZA65_RS11350	0.41	-0.2
2,414,178	-		DZA65_RS11350	0.41	-1.2
2,414,178	-		DZA65_RS11350	0.41	-0.3
2,414,178	-		DZA65_RS11350	0.41	-0.3
2,414,178	-		DZA65_RS11350	0.41	-0.7
2,414,178	-		DZA65_RS11350	0.41	+0.2
2,414,178	-		DZA65_RS11350	0.41	+0.8
2,414,248	+		DZA65_RS11350	0.45	+0.7
2,414,248	+		DZA65_RS11350	0.45	-2.1
2,414,249	-		DZA65_RS11350	0.45	-0.9
2,414,249	-		DZA65_RS11350	0.45	+0.9
2,414,249	-		DZA65_RS11350	0.45	-0.4
2,414,274	+		DZA65_RS11350	0.46	-0.4
2,414,274	+		DZA65_RS11350	0.46	-0.8
2,414,274	+		DZA65_RS11350	0.46	+0.1
2,414,274	+		DZA65_RS11350	0.46	+0.7
2,414,274	+		DZA65_RS11350	0.46	+0.5
2,414,275	-		DZA65_RS11350	0.46	-0.9
2,414,275	-		DZA65_RS11350	0.46	+0.6
2,414,275	-		DZA65_RS11350	0.46	+0.5
2,414,275	-		DZA65_RS11350	0.46	+0.4
2,414,326	+		DZA65_RS11350	0.49	-1.1
2,414,326	+		DZA65_RS11350	0.49	-1.3
2,414,326	+		DZA65_RS11350	0.49	-2.5
2,414,326	+		DZA65_RS11350	0.49	-0.3
2,414,326	+		DZA65_RS11350	0.49	+1.0
2,414,326	+		DZA65_RS11350	0.49	-0.8
2,414,327	-		DZA65_RS11350	0.49	+0.8
2,414,327	-		DZA65_RS11350	0.49	-0.2
2,414,331	+		DZA65_RS11350	0.49	-0.1
2,414,331	+		DZA65_RS11350	0.49	+0.2
2,414,331	+		DZA65_RS11350	0.49	-0.3
2,414,392	+		DZA65_RS11350	0.52	+0.8
2,414,393	-		DZA65_RS11350	0.52	-0.1
2,414,398	-		DZA65_RS11350	0.53	-2.3
2,414,430	-		DZA65_RS11350	0.54	-1.1
2,414,430	-		DZA65_RS11350	0.54	+0.4
2,414,433	-		DZA65_RS11350	0.54	+0.1
2,414,451	+		DZA65_RS11350	0.55	+0.5
2,414,451	+		DZA65_RS11350	0.55	-0.9
2,414,451	+		DZA65_RS11350	0.55	+0.3
2,414,451	+		DZA65_RS11350	0.55	-0.4
2,414,451	+		DZA65_RS11350	0.55	+0.7
2,414,451	+		DZA65_RS11350	0.55	-0.2
2,414,452	-		DZA65_RS11350	0.55	-0.7
2,414,452	-		DZA65_RS11350	0.55	-2.3
2,414,452	-		DZA65_RS11350	0.55	-0.1
2,414,452	-		DZA65_RS11350	0.55	-1.1
2,414,452	-		DZA65_RS11350	0.55	-0.1
2,414,452	-		DZA65_RS11350	0.55	+0.0
2,414,452	-		DZA65_RS11350	0.55	-0.5
2,414,452	-		DZA65_RS11350	0.55	-0.2
2,414,452	-		DZA65_RS11350	0.55	+0.7
2,414,611	+		DZA65_RS11350	0.64	+0.5
2,414,611	+		DZA65_RS11350	0.64	-2.3
2,414,612	-		DZA65_RS11350	0.64	-1.5
2,414,623	+		DZA65_RS11350	0.64	+0.3
2,414,874	+		DZA65_RS11350	0.77	-0.5
2,414,874	+		DZA65_RS11350	0.77	-2.1
2,414,874	+		DZA65_RS11350	0.77	-0.1
2,414,875	-		DZA65_RS11350	0.77	-0.8
2,414,875	-		DZA65_RS11350	0.77	+0.3
2,414,875	-		DZA65_RS11350	0.77	+0.7
2,414,875	-		DZA65_RS11350	0.77	+0.8
2,414,875	-		DZA65_RS11350	0.77	+1.0
2,415,047	+		DZA65_RS11350	0.86	+0.5
2,415,047	+		DZA65_RS11350	0.86	+0.7
2,415,047	+		DZA65_RS11350	0.86	+0.4
2,415,048	-		DZA65_RS11350	0.86	-0.1
2,415,048	-		DZA65_RS11350	0.86	-1.1
2,415,048	-		DZA65_RS11350	0.86	-0.7
2,415,048	-		DZA65_RS11350	0.86	-0.3
2,415,048	-		DZA65_RS11350	0.86	+0.5
2,415,048	-		DZA65_RS11350	0.86	-1.1
2,415,154	-				+0.3
2,415,154	-				-0.3
2,415,214	-				-0.3
2,415,265	-				-1.2
2,415,265	-				-1.0
2,415,265	-				-0.3
2,415,287	+				+0.7
2,415,288	-				-0.2
2,415,288	-				-1.6
2,415,288	-				+1.3
2,415,291	+				-1.0
2,415,291	+				-2.5
2,415,292	-				+1.1
2,415,292	-				+0.4
2,415,292	-				-1.1
2,415,377	-				-0.7
2,415,400	+				-0.1
2,415,401	-				-0.5
2,415,420	+				-2.2
2,415,444	+				-0.3
2,415,445	-				-0.1
2,415,454	+				+0.8
2,415,457	+				-0.5
2,415,457	+				-1.0
2,415,458	-				-1.4
2,415,458	-				-0.1
2,415,458	-				-0.0
2,415,490	-				-1.5
2,415,490	-				+0.5
2,415,515	-				-0.7
2,415,536	+				+0.2
2,415,547	+				+0.4
2,415,547	+				-2.1
2,415,571	-		DZA65_RS11355	0.13	-0.6
2,415,578	+		DZA65_RS11355	0.14	+1.5
2,415,579	-				+0.9
2,415,600	+		DZA65_RS11355	0.18	-0.9
2,415,600	+		DZA65_RS11355	0.18	-0.8
2,415,613	+		DZA65_RS11355	0.21	-1.2
2,415,669	-		DZA65_RS11355	0.31	+0.1
2,415,693	-		DZA65_RS11355	0.36	+0.4
2,415,705	+		DZA65_RS11355	0.38	+0.5
2,415,705	+		DZA65_RS11355	0.38	-1.1
2,415,725	+		DZA65_RS11355	0.41	-1.2
2,415,726	-		DZA65_RS11355	0.42	-2.0
2,415,797	+		DZA65_RS11355	0.55	-0.5
2,415,797	+		DZA65_RS11355	0.55	-0.6
2,415,797	+		DZA65_RS11355	0.55	-0.1
2,415,798	-		DZA65_RS11355	0.55	+0.5
2,415,800	-				-1.5
2,415,800	-				-0.5
2,415,800	-		DZA65_RS11355	0.55	+1.1
2,415,823	-		DZA65_RS11355	0.60	-1.5
2,415,902	+		DZA65_RS11355	0.74	+0.2
2,415,985	+		DZA65_RS11355	0.90	-0.9
2,415,986	-		DZA65_RS11355	0.90	-0.9
2,415,988	+				+0.3
2,416,002	+				-1.0
2,416,002	+				+0.3
2,416,003	-				-0.9
2,416,003	-				+0.3
2,416,029	-				-2.1
2,416,029	-				+0.1
2,416,038	+				-0.2
2,416,039	-				-0.7
2,416,039	-				-1.9
2,416,039	-				-1.9
2,416,043	+				-0.2
2,416,095	-				-1.2
2,416,095	-				+1.0
2,416,098	-				-2.8
2,416,101	-				+0.6
2,416,101	-				-0.5
2,416,110	-				-0.3
2,416,113	+				+0.5
2,416,113	+				+1.7
2,416,114	-				-0.0
2,416,114	-				-2.5
2,416,132	+				-3.2
2,416,132	+				+0.5
2,416,132	+				-0.5
2,416,132	+				-0.2
2,416,133	-				+0.7
2,416,133	-				-0.2
2,416,133	-				+0.5
2,416,142	+				-1.2
2,416,143	-				-0.5
2,416,154	+				+0.2
2,416,154	+				+0.8
2,416,177	+				-0.5
2,416,195	+				-0.1
2,416,202	+				-0.2
2,416,222	+				-0.4
2,416,298	+		DZA65_RS11360	0.13	+0.8
2,416,298	+		DZA65_RS11360	0.13	-1.5