Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09355

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,971,448	+		DZA65_RS09350	0.30	-1.1
1,971,448	+		DZA65_RS09350	0.30	+1.3
1,971,448	+		DZA65_RS09350	0.30	+0.2
1,971,448	+		DZA65_RS09350	0.30	-0.5
1,971,449	-		DZA65_RS09350	0.30	-0.5
1,971,449	-		DZA65_RS09350	0.30	-0.4
1,971,449	-		DZA65_RS09350	0.30	-1.6
1,971,449	-		DZA65_RS09350	0.30	-1.1
1,971,449	-		DZA65_RS09350	0.30	-1.6
1,971,449	-		DZA65_RS09350	0.30	-0.3
1,971,449	-		DZA65_RS09350	0.30	+0.8
1,971,482	+		DZA65_RS09350	0.34	+0.4
1,971,482	+		DZA65_RS09350	0.34	+0.5
1,971,483	-		DZA65_RS09350	0.34	+1.0
1,971,563	-		DZA65_RS09350	0.42	-0.4
1,971,612	-		DZA65_RS09350	0.47	+0.4
1,971,612	-		DZA65_RS09350	0.47	-0.4
1,971,653	+		DZA65_RS09350	0.51	-0.8
1,971,653	+		DZA65_RS09350	0.51	-1.3
1,971,653	+		DZA65_RS09350	0.51	+0.7
1,971,653	+		DZA65_RS09350	0.51	-0.2
1,971,653	+		DZA65_RS09350	0.51	-0.5
1,971,653	+		DZA65_RS09350	0.51	+0.1
1,971,653	+		DZA65_RS09350	0.51	+1.2
1,971,654	-				+1.5
1,971,654	-		DZA65_RS09350	0.51	-0.6
1,971,654	-		DZA65_RS09350	0.51	+1.3
1,971,725	+		DZA65_RS09350	0.59	+1.3
1,971,742	+		DZA65_RS09350	0.60	+0.1
1,971,749	-		DZA65_RS09350	0.61	-0.9
1,971,749	-		DZA65_RS09350	0.61	+0.1
1,971,756	-		DZA65_RS09350	0.62	-0.5
1,971,784	+		DZA65_RS09350	0.65	-0.9
1,971,805	+		DZA65_RS09350	0.67	-0.3
1,971,805	+		DZA65_RS09350	0.67	-0.0
1,971,805	+		DZA65_RS09350	0.67	-2.1
1,971,825	-		DZA65_RS09350	0.69	-0.2
1,971,825	-		DZA65_RS09350	0.69	-0.9
1,971,830	+		DZA65_RS09350	0.69	-1.0
1,971,838	+				+0.7
1,971,838	+		DZA65_RS09350	0.70	-0.3
1,971,839	-		DZA65_RS09350	0.70	-1.2
1,971,858	+		DZA65_RS09350	0.72	+1.3
1,971,858	+		DZA65_RS09350	0.72	+0.2
1,971,858	+		DZA65_RS09350	0.72	-1.0
1,971,858	+				+0.7
1,971,858	+		DZA65_RS09350	0.72	-1.3
1,971,858	+		DZA65_RS09350	0.72	-0.7
1,971,858	+		DZA65_RS09350	0.72	-0.4
1,971,859	-		DZA65_RS09350	0.72	-0.0
1,971,859	-		DZA65_RS09350	0.72	+1.1
1,971,859	-		DZA65_RS09350	0.72	+0.5
1,971,859	-		DZA65_RS09350	0.72	-0.2
1,971,859	-		DZA65_RS09350	0.72	-2.1
1,971,859	-		DZA65_RS09350	0.72	-0.8
1,971,889	+		DZA65_RS09350	0.76	-3.0
1,971,889	+		DZA65_RS09350	0.76	-0.3
1,971,889	+		DZA65_RS09350	0.76	-0.2
1,971,890	-		DZA65_RS09350	0.76	+0.2
1,971,959	+		DZA65_RS09350	0.83	+0.1
1,971,959	+		DZA65_RS09350	0.83	-0.5
1,971,959	+		DZA65_RS09350	0.83	+0.1
1,971,960	-		DZA65_RS09350	0.83	+1.5
1,971,960	-		DZA65_RS09350	0.83	-1.7
1,971,960	-		DZA65_RS09350	0.83	-0.0
1,971,960	-		DZA65_RS09350	0.83	-0.0
1,971,992	-		DZA65_RS09350	0.86	-1.1
1,972,060	+				+0.1
1,972,109	+				+1.0
1,972,155	+				+0.8
1,972,184	+				+1.7
1,972,184	+				+0.1
1,972,205	-				-1.1
1,972,221	+				-0.8
1,972,233	+				-1.5
1,972,234	-				+0.9
1,972,234	-				-0.1
1,972,264	-				+0.5
1,972,278	-				+1.4
1,972,315	-				+0.2
1,972,332	+				+0.7
1,972,333	-				-0.3
1,972,333	-				+1.5
1,972,333	-				+1.9
1,972,333	-				-0.0
1,972,349	+				+1.7
1,972,362	+				+0.4
1,972,362	+				-0.5
1,972,468	+		DZA65_RS09355	0.11	+0.3
1,972,468	+		DZA65_RS09355	0.11	-1.1
1,972,490	+		DZA65_RS09355	0.14	+0.1
1,972,491	-		DZA65_RS09355	0.14	-0.9
1,972,491	-		DZA65_RS09355	0.14	+0.3
1,972,491	-		DZA65_RS09355	0.14	-0.1
1,972,504	-		DZA65_RS09355	0.16	+0.3
1,972,504	-		DZA65_RS09355	0.16	+1.9
1,972,519	-		DZA65_RS09355	0.18	+0.6
1,972,519	-		DZA65_RS09355	0.18	-0.3
1,972,529	-		DZA65_RS09355	0.19	-0.7
1,972,529	-		DZA65_RS09355	0.19	-0.3
1,972,616	+		DZA65_RS09355	0.30	+0.1
1,972,616	+		DZA65_RS09355	0.30	-1.1
1,972,616	+		DZA65_RS09355	0.30	-0.0
1,972,616	+		DZA65_RS09355	0.30	+0.1
1,972,616	+		DZA65_RS09355	0.30	+1.0
1,972,616	+		DZA65_RS09355	0.30	+0.2
1,972,617	-		DZA65_RS09355	0.30	+0.4
1,972,617	-		DZA65_RS09355	0.30	-0.4
1,972,617	-		DZA65_RS09355	0.30	+0.5
1,972,617	-		DZA65_RS09355	0.30	-0.2
1,972,617	-		DZA65_RS09355	0.30	-1.3
1,972,617	-		DZA65_RS09355	0.30	+0.2
1,972,617	-		DZA65_RS09355	0.30	+0.1
1,972,618	+		DZA65_RS09355	0.30	-0.0
1,972,618	+		DZA65_RS09355	0.30	-0.2
1,972,618	+		DZA65_RS09355	0.30	+0.4
1,972,618	+		DZA65_RS09355	0.30	-0.3
1,972,619	-		DZA65_RS09355	0.30	-0.2
1,972,722	-		DZA65_RS09355	0.43	-1.6
1,972,799	+		DZA65_RS09355	0.52	-0.5
1,972,799	+		DZA65_RS09355	0.52	+1.2
1,972,800	-		DZA65_RS09355	0.53	+0.2
1,972,802	+		DZA65_RS09355	0.53	+0.7
1,972,802	+		DZA65_RS09355	0.53	+1.0
1,972,802	+		DZA65_RS09355	0.53	-0.2
1,972,803	-		DZA65_RS09355	0.53	+1.3
1,972,803	-		DZA65_RS09355	0.53	-1.3
1,972,832	+		DZA65_RS09355	0.57	+0.7
1,972,903	+		DZA65_RS09355	0.65	-0.3
1,972,904	-		DZA65_RS09355	0.65	+0.2
1,972,904	-		DZA65_RS09355	0.65	+0.3
1,972,921	+		DZA65_RS09355	0.68	+0.2
1,972,958	+		DZA65_RS09355	0.72	-0.6
1,973,034	+		DZA65_RS09355	0.82	-0.4
1,973,034	+		DZA65_RS09355	0.82	+0.4
1,973,034	+		DZA65_RS09355	0.82	+1.9
1,973,034	+		DZA65_RS09355	0.82	+0.3
1,973,034	+		DZA65_RS09355	0.82	+0.7
1,973,035	-		DZA65_RS09355	0.82	+0.7
1,973,035	-		DZA65_RS09355	0.82	+0.0
1,973,080	+		DZA65_RS09355	0.87	+0.1
1,973,126	+				+0.3
1,973,126	+				-0.3
1,973,127	-				-0.1
1,973,127	-				-0.7
1,973,127	-				-1.3
1,973,127	-				-0.0
1,973,181	-				-0.2
1,973,198	+				+0.1
1,973,201	-				-0.4
1,973,201	-				+0.7
1,973,201	-				-1.3
1,973,242	+				-0.9
1,973,287	+				+1.9
1,973,288	-				-0.6
1,973,338	+		DZA65_RS09360	0.16	-1.2
1,973,386	+		DZA65_RS09360	0.27	-1.4
1,973,439	-		DZA65_RS09360	0.39	-0.9
1,973,439	-		DZA65_RS09360	0.39	+0.4
1,973,439	-		DZA65_RS09360	0.39	-3.1
1,973,439	-		DZA65_RS09360	0.39	+0.3
1,973,488	-		DZA65_RS09360	0.49	+1.3
1,973,488	-		DZA65_RS09360	0.49	+1.1
1,973,500	+		DZA65_RS09360	0.52	-0.7
1,973,501	-		DZA65_RS09360	0.52	-2.0
1,973,501	-		DZA65_RS09360	0.52	-1.0
1,973,501	-		DZA65_RS09360	0.52	+0.0
1,973,504	+		DZA65_RS09360	0.53	-0.0
1,973,504	+		DZA65_RS09360	0.53	-0.5
1,973,534	+		DZA65_RS09360	0.60	-0.1
1,973,538	+		DZA65_RS09360	0.60	+0.7
1,973,538	+		DZA65_RS09360	0.60	+0.3
1,973,538	+		DZA65_RS09360	0.60	-0.1
1,973,538	+		DZA65_RS09360	0.60	-0.5
1,973,539	-		DZA65_RS09360	0.61	-1.1
1,973,573	-		DZA65_RS09360	0.68	-0.3
1,973,574	+		DZA65_RS09360	0.68	-3.3
1,973,714	+				-0.9
1,973,715	-				-0.6
1,973,715	-				-1.5
1,973,738	-				+0.2
1,973,756	+				-0.0
1,973,756	+				-0.1
1,973,758	+				+0.1
1,973,758	+				-0.2
1,973,758	+				-0.9
1,973,759	-				+0.2
1,973,759	-				-0.2
1,973,759	-				+0.2
1,973,759	-				-1.3
1,973,759	-				-0.6
1,973,759	-				-1.9
1,973,759	-				-1.3
1,973,781	-				-1.1
1,973,784	+				+0.4
1,973,784	+				-0.7
1,973,875	+		DZA65_RS09365	0.35	-0.9
1,973,875	+		DZA65_RS09365	0.35	-0.7
1,973,952	-		DZA65_RS09365	0.61	-0.7
1,973,975	-		DZA65_RS09365	0.69	-1.9
1,973,975	-		DZA65_RS09365	0.69	-0.8
1,973,977	+		DZA65_RS09365	0.69	-0.7
1,973,978	-		DZA65_RS09365	0.70	+0.7
1,974,001	+		DZA65_RS09365	0.77	+0.5
1,974,001	+		DZA65_RS09365	0.77	-1.5
1,974,007	-		DZA65_RS09365	0.79	-2.1
1,974,026	+		DZA65_RS09365	0.86	+0.4
1,974,027	-		DZA65_RS09365	0.86	+0.4
1,974,027	-		DZA65_RS09365	0.86	-0.5
1,974,035	+		DZA65_RS09365	0.89	-0.9
1,974,035	+		DZA65_RS09365	0.89	-1.1
1,974,036	-		DZA65_RS09365	0.89	-0.6
1,974,036	-		DZA65_RS09365	0.89	-0.3
1,974,036	-		DZA65_RS09365	0.89	-1.9
1,974,041	-				-1.6
1,974,079	+				-1.0
1,974,104	-				-1.6
1,974,137	-		DZA65_RS09370	0.23	-0.9
1,974,168	+		DZA65_RS09370	0.41	+0.3