Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04485

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04480 and DZA65_RS04485 are separated by 59 nucleotidesDZA65_RS04485 and DZA65_RS04490 overlap by 8 nucleotidesDZA65_RS04490 and DZA65_RS04495 overlap by 11 nucleotides DZA65_RS04480: DZA65_RS04480 - LysR family transcriptional regulator, at 934,186 to 935,088 _RS04480 DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134 _RS04485 DZA65_RS04490: DZA65_RS04490 - ribonuclease Z, at 936,127 to 936,894 _RS04490 DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933 _RS04495 Position (kb) 935 936 937Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 934.150 kb on - strandat 934.150 kb on - strandat 934.153 kb on + strandat 934.172 kb on - strandat 934.176 kb on - strandat 934.176 kb on - strandat 934.179 kb on + strandat 934.180 kb on - strandat 934.190 kb on + strandat 934.191 kb on - strandat 934.191 kb on - strandat 934.194 kb on + strandat 934.194 kb on + strandat 934.194 kb on + strandat 934.194 kb on + strandat 934.194 kb on + strandat 934.195 kb on - strandat 934.196 kb on + strandat 934.196 kb on + strandat 934.210 kb on + strandat 934.210 kb on + strandat 934.210 kb on + strandat 934.211 kb on - strandat 934.211 kb on - strandat 934.213 kb on + strandat 934.213 kb on + strandat 934.266 kb on + strandat 934.267 kb on - strandat 934.333 kb on - strand, within DZA65_RS04480at 934.333 kb on - strand, within DZA65_RS04480at 934.412 kb on - strand, within DZA65_RS04480at 934.414 kb on + strand, within DZA65_RS04480at 934.414 kb on + strand, within DZA65_RS04480at 934.505 kb on - strand, within DZA65_RS04480at 934.507 kb on + strand, within DZA65_RS04480at 934.507 kb on + strand, within DZA65_RS04480at 934.523 kb on + strand, within DZA65_RS04480at 934.560 kb on + strand, within DZA65_RS04480at 934.560 kb on + strand, within DZA65_RS04480at 934.560 kb on + strand, within DZA65_RS04480at 934.560 kb on + strand, within DZA65_RS04480at 934.561 kb on - strand, within DZA65_RS04480at 934.561 kb on - strand, within DZA65_RS04480at 934.642 kb on + strand, within DZA65_RS04480at 934.642 kb on + strand, within DZA65_RS04480at 934.642 kb on + strand, within DZA65_RS04480at 934.642 kb on + strand, within DZA65_RS04480at 934.643 kb on - strand, within DZA65_RS04480at 934.643 kb on - strand, within DZA65_RS04480at 934.643 kb on - strand, within DZA65_RS04480at 934.662 kb on + strand, within DZA65_RS04480at 934.798 kb on + strand, within DZA65_RS04480at 934.799 kb on - strand, within DZA65_RS04480at 934.879 kb on - strand, within DZA65_RS04480at 934.879 kb on - strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.916 kb on + strand, within DZA65_RS04480at 934.917 kb on - strand, within DZA65_RS04480at 934.917 kb on - strand, within DZA65_RS04480at 934.917 kb on - strand, within DZA65_RS04480at 934.917 kb on - strand, within DZA65_RS04480at 934.917 kb on - strandat 934.917 kb on - strand, within DZA65_RS04480at 934.917 kb on - strand, within DZA65_RS04480at 935.005 kb on + strandat 935.006 kb on - strandat 935.010 kb on + strandat 935.011 kb on - strandat 935.055 kb on + strandat 935.056 kb on - strandat 935.056 kb on - strandat 935.149 kb on + strandat 935.150 kb on - strandat 935.171 kb on + strandat 935.171 kb on + strandat 935.172 kb on - strandat 935.172 kb on - strandat 935.464 kb on + strand, within DZA65_RS04485at 935.574 kb on - strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.575 kb on + strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 935.576 kb on - strand, within DZA65_RS04485at 936.058 kb on + strandat 936.058 kb on + strandat 936.058 kb on + strandat 936.058 kb on + strandat 936.058 kb on + strandat 936.058 kb on + strandat 936.059 kb on - strandat 936.059 kb on - strandat 936.059 kb on - strandat 936.059 kb on - strandat 936.059 kb on - strandat 936.128 kb on + strandat 936.128 kb on + strandat 936.128 kb on + strandat 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.266 kb on + strand, within DZA65_RS04490at 936.267 kb on - strand, within DZA65_RS04490at 936.267 kb on - strand, within DZA65_RS04490at 936.267 kb on - strand, within DZA65_RS04490at 936.267 kb on - strand, within DZA65_RS04490at 936.329 kb on + strand, within DZA65_RS04490at 936.431 kb on + strand, within DZA65_RS04490at 936.432 kb on - strand, within DZA65_RS04490at 936.461 kb on + strand, within DZA65_RS04490at 936.461 kb on + strandat 936.462 kb on - strand, within DZA65_RS04490at 936.462 kb on - strand, within DZA65_RS04490at 936.462 kb on - strand, within DZA65_RS04490at 936.552 kb on + strand, within DZA65_RS04490at 936.552 kb on + strand, within DZA65_RS04490at 936.723 kb on + strand, within DZA65_RS04490at 936.723 kb on + strand, within DZA65_RS04490at 936.723 kb on + strand, within DZA65_RS04490at 936.724 kb on - strand, within DZA65_RS04490at 936.724 kb on - strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.728 kb on + strand, within DZA65_RS04490at 936.729 kb on - strandat 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strandat 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.729 kb on - strand, within DZA65_RS04490at 936.860 kb on + strandat 936.860 kb on + strandat 936.860 kb on + strandat 936.860 kb on + strandat 936.861 kb on - strandat 937.074 kb on + strand, within DZA65_RS04495at 937.108 kb on + strand, within DZA65_RS04495at 937.109 kb on - strand, within DZA65_RS04495at 937.109 kb on - strand, within DZA65_RS04495at 937.109 kb on - strand, within DZA65_RS04495at 937.109 kb on - strand, within DZA65_RS04495

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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934,150 - +0.7
934,150 - +1.1
934,153 + -0.7
934,172 - -0.2
934,176 - +0.1
934,176 - +2.3
934,179 + -0.6
934,180 - -0.2
934,190 + -0.1
934,191 - -1.7
934,191 - -0.7
934,194 + +0.8
934,194 + +0.5
934,194 + -0.1
934,194 + -0.5
934,194 + -0.5
934,195 - +0.2
934,196 + -0.6
934,196 + -0.3
934,210 + -0.5
934,210 + -0.5
934,210 + +4.6
934,211 - -0.3
934,211 - -0.5
934,213 + +0.2
934,213 + -0.4
934,266 + -1.7
934,267 - -0.0
934,333 - DZA65_RS04480 0.16 +0.9
934,333 - DZA65_RS04480 0.16 +0.6
934,412 - DZA65_RS04480 0.25 -0.2
934,414 + DZA65_RS04480 0.25 -1.4
934,414 + DZA65_RS04480 0.25 -1.2
934,505 - DZA65_RS04480 0.35 -0.0
934,507 + DZA65_RS04480 0.36 -0.3
934,507 + DZA65_RS04480 0.36 +0.7
934,523 + DZA65_RS04480 0.37 -0.9
934,560 + DZA65_RS04480 0.41 +0.7
934,560 + DZA65_RS04480 0.41 -1.7
934,560 + DZA65_RS04480 0.41 -1.0
934,560 + DZA65_RS04480 0.41 -2.1
934,561 - DZA65_RS04480 0.42 +0.3
934,561 - DZA65_RS04480 0.42 +0.3
934,642 + DZA65_RS04480 0.50 -0.5
934,642 + DZA65_RS04480 0.50 +0.3
934,642 + DZA65_RS04480 0.50 -0.4
934,642 + DZA65_RS04480 0.50 +0.6
934,643 - DZA65_RS04480 0.51 -0.5
934,643 - DZA65_RS04480 0.51 -0.2
934,643 - DZA65_RS04480 0.51 -0.1
934,662 + DZA65_RS04480 0.53 +1.5
934,798 + DZA65_RS04480 0.68 -0.9
934,799 - DZA65_RS04480 0.68 +0.1
934,879 - DZA65_RS04480 0.77 +0.6
934,879 - DZA65_RS04480 0.77 +1.1
934,916 + DZA65_RS04480 0.81 +0.4
934,916 + DZA65_RS04480 0.81 +1.4
934,916 + DZA65_RS04480 0.81 -2.5
934,916 + DZA65_RS04480 0.81 +1.0
934,916 + DZA65_RS04480 0.81 -0.3
934,916 + DZA65_RS04480 0.81 -0.5
934,916 + DZA65_RS04480 0.81 +1.1
934,917 - DZA65_RS04480 0.81 +0.9
934,917 - DZA65_RS04480 0.81 -0.4
934,917 - DZA65_RS04480 0.81 -1.5
934,917 - DZA65_RS04480 0.81 -0.7
934,917 - -0.5
934,917 - DZA65_RS04480 0.81 +0.6
934,917 - DZA65_RS04480 0.81 +1.9
935,005 + -1.8
935,006 - +0.7
935,010 + -0.8
935,011 - -0.4
935,055 + +1.1
935,056 - -2.1
935,056 - -1.9
935,149 + -0.7
935,150 - +0.1
935,171 + -0.7
935,171 + -0.8
935,172 - +1.4
935,172 - -1.5
935,464 + DZA65_RS04485 0.32 -0.6
935,574 - DZA65_RS04485 0.43 +1.1
935,575 + DZA65_RS04485 0.43 -0.7
935,575 + DZA65_RS04485 0.43 +1.1
935,575 + DZA65_RS04485 0.43 -0.9
935,575 + DZA65_RS04485 0.43 +0.2
935,575 + DZA65_RS04485 0.43 -1.9
935,575 + DZA65_RS04485 0.43 -0.7
935,576 - DZA65_RS04485 0.43 -1.3
935,576 - DZA65_RS04485 0.43 -0.7
935,576 - DZA65_RS04485 0.43 -1.7
935,576 - DZA65_RS04485 0.43 -0.4
935,576 - DZA65_RS04485 0.43 -0.8
935,576 - DZA65_RS04485 0.43 -2.3
936,058 + +0.1
936,058 + -1.3
936,058 + -0.8
936,058 + -0.1
936,058 + +0.9
936,058 + +0.4
936,059 - +0.7
936,059 - -0.9
936,059 - -0.6
936,059 - +0.1
936,059 - +0.6
936,128 + -0.3
936,128 + +0.7
936,128 + -1.6
936,266 + DZA65_RS04490 0.18 -0.5
936,266 + DZA65_RS04490 0.18 -1.1
936,266 + DZA65_RS04490 0.18 -0.7
936,266 + DZA65_RS04490 0.18 +1.1
936,266 + DZA65_RS04490 0.18 -0.1
936,266 + DZA65_RS04490 0.18 +0.1
936,266 + DZA65_RS04490 0.18 -0.4
936,267 - DZA65_RS04490 0.18 -0.5
936,267 - DZA65_RS04490 0.18 +0.8
936,267 - DZA65_RS04490 0.18 -0.5
936,267 - DZA65_RS04490 0.18 -1.4
936,329 + DZA65_RS04490 0.26 -0.4
936,431 + DZA65_RS04490 0.40 +0.1
936,432 - DZA65_RS04490 0.40 +0.1
936,461 + DZA65_RS04490 0.43 -2.0
936,461 + +0.1
936,462 - DZA65_RS04490 0.44 -0.5
936,462 - DZA65_RS04490 0.44 +0.1
936,462 - DZA65_RS04490 0.44 -0.1
936,552 + DZA65_RS04490 0.55 -0.9
936,552 + DZA65_RS04490 0.55 -1.9
936,723 + DZA65_RS04490 0.78 -1.4
936,723 + DZA65_RS04490 0.78 +1.6
936,723 + DZA65_RS04490 0.78 -1.4
936,724 - DZA65_RS04490 0.78 -1.0
936,724 - DZA65_RS04490 0.78 +0.7
936,728 + DZA65_RS04490 0.78 -0.8
936,728 + DZA65_RS04490 0.78 +0.2
936,728 + DZA65_RS04490 0.78 -0.7
936,728 + DZA65_RS04490 0.78 +0.7
936,728 + DZA65_RS04490 0.78 +1.1
936,728 + DZA65_RS04490 0.78 +1.1
936,728 + DZA65_RS04490 0.78 -1.7
936,728 + DZA65_RS04490 0.78 -0.7
936,728 + DZA65_RS04490 0.78 -0.6
936,728 + DZA65_RS04490 0.78 -0.1
936,728 + DZA65_RS04490 0.78 +0.6
936,728 + DZA65_RS04490 0.78 +1.3
936,728 + DZA65_RS04490 0.78 +0.2
936,728 + DZA65_RS04490 0.78 -0.3
936,728 + DZA65_RS04490 0.78 -0.7
936,728 + DZA65_RS04490 0.78 -0.4
936,728 + DZA65_RS04490 0.78 -0.9
936,728 + DZA65_RS04490 0.78 -0.8
936,729 - +0.5
936,729 - DZA65_RS04490 0.78 -1.5
936,729 - DZA65_RS04490 0.78 -0.9
936,729 - DZA65_RS04490 0.78 +0.5
936,729 - DZA65_RS04490 0.78 +0.1
936,729 - DZA65_RS04490 0.78 +0.1
936,729 - +0.5
936,729 - DZA65_RS04490 0.78 -1.5
936,729 - DZA65_RS04490 0.78 +0.6
936,729 - DZA65_RS04490 0.78 -1.6
936,860 + -0.5
936,860 + +1.0
936,860 + +0.1
936,860 + -3.2
936,861 - -0.8
937,074 + DZA65_RS04495 0.18 -0.9
937,108 + DZA65_RS04495 0.21 +1.3
937,109 - DZA65_RS04495 0.21 +0.3
937,109 - DZA65_RS04495 0.21 -2.3
937,109 - DZA65_RS04495 0.21 -0.5
937,109 - DZA65_RS04495 0.21 +0.1

Or see this region's nucleotide sequence