Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03940 and DZA65_RS03945 are separated by 301 nucleotides DZA65_RS03945 and DZA65_RS03950 overlap by 17 nucleotides DZA65_RS03950 and DZA65_RS03955 are separated by 238 nucleotides
DZA65_RS03940: DZA65_RS03940 - integrase arm-type DNA-binding domain-containing protein, at 836,737 to 837,482
_RS03940
DZA65_RS03945: DZA65_RS03945 - hypothetical protein, at 837,784 to 838,329
_RS03945
DZA65_RS03950: DZA65_RS03950 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 838,313 to 839,230
_RS03950
DZA65_RS03955: DZA65_RS03955 - hypothetical protein, at 839,469 to 840,062
_RS03955
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.317 kb on + strand, within DZA65_RS03940 at 837.318 kb on - strand, within DZA65_RS03940 at 837.318 kb on - strand, within DZA65_RS03940 at 837.321 kb on + strand, within DZA65_RS03940 at 837.321 kb on + strand, within DZA65_RS03940 at 837.322 kb on - strand, within DZA65_RS03940 at 837.335 kb on - strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.384 kb on + strand, within DZA65_RS03940 at 837.385 kb on - strand, within DZA65_RS03940 at 837.385 kb on - strand, within DZA65_RS03940 at 837.438 kb on - strand at 837.458 kb on + strand at 837.459 kb on - strand at 837.459 kb on - strand at 837.468 kb on - strand at 837.486 kb on - strand at 837.525 kb on + strand at 837.528 kb on + strand at 837.529 kb on - strand at 837.540 kb on + strand at 837.541 kb on - strand at 837.541 kb on - strand at 837.541 kb on - strand at 837.543 kb on - strand at 837.544 kb on + strand at 837.570 kb on - strand at 837.575 kb on + strand at 837.575 kb on + strand at 837.575 kb on + strand at 837.576 kb on - strand at 837.581 kb on + strand at 837.581 kb on + strand at 837.581 kb on + strand at 837.582 kb on - strand at 837.582 kb on - strand at 837.582 kb on - strand at 837.583 kb on + strand at 837.583 kb on + strand at 837.612 kb on + strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.654 kb on + strand at 837.654 kb on + strand at 837.655 kb on - strand at 837.655 kb on - strand at 837.677 kb on + strand at 837.713 kb on + strand at 837.758 kb on + strand at 837.779 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.308 kb on - strand at 838.308 kb on - strand at 838.309 kb on + strand at 838.309 kb on + strand at 838.309 kb on + strand at 838.310 kb on - strand at 838.327 kb on + strand at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.459 kb on + strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.579 kb on + strand, within DZA65_RS03950 at 838.579 kb on + strand, within DZA65_RS03950 at 838.580 kb on - strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.590 kb on - strand, within DZA65_RS03950 at 838.659 kb on - strand, within DZA65_RS03950 at 838.659 kb on - strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.689 kb on + strand, within DZA65_RS03950 at 838.690 kb on - strand, within DZA65_RS03950 at 838.721 kb on - strand, within DZA65_RS03950 at 838.766 kb on + strand, within DZA65_RS03950 at 838.766 kb on + strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.789 kb on - strand, within DZA65_RS03950 at 838.795 kb on + strand, within DZA65_RS03950 at 838.795 kb on + strand, within DZA65_RS03950 at 838.796 kb on - strand, within DZA65_RS03950 at 838.796 kb on - strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.809 kb on + strand, within DZA65_RS03950 at 838.820 kb on + strand, within DZA65_RS03950 at 838.829 kb on - strand, within DZA65_RS03950 at 838.829 kb on - strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.838 kb on - strand at 838.838 kb on - strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.930 kb on - strand, within DZA65_RS03950 at 838.930 kb on - strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.010 kb on - strand, within DZA65_RS03950 at 839.010 kb on - strand, within DZA65_RS03950 at 839.019 kb on + strand, within DZA65_RS03950 at 839.019 kb on + strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.034 kb on + strand, within DZA65_RS03950 at 839.072 kb on - strand, within DZA65_RS03950 at 839.137 kb on + strand, within DZA65_RS03950 at 839.138 kb on - strand, within DZA65_RS03950 at 839.138 kb on - strand, within DZA65_RS03950 at 839.145 kb on - strand at 839.161 kb on - strand at 839.161 kb on - strand at 839.193 kb on + strand at 839.193 kb on + strand at 839.193 kb on + strand at 839.246 kb on + strand at 839.368 kb on + strand at 839.374 kb on - strand at 839.421 kb on - strand at 839.422 kb on + strand at 839.428 kb on + strand at 839.428 kb on + strand at 839.428 kb on + strand at 839.429 kb on - strand at 839.510 kb on + strand at 839.637 kb on - strand, within DZA65_RS03955 at 839.736 kb on - strand, within DZA65_RS03955 at 839.736 kb on - strand, within DZA65_RS03955 at 839.755 kb on + strand, within DZA65_RS03955 at 839.756 kb on - strand, within DZA65_RS03955 at 839.759 kb on - strand, within DZA65_RS03955 at 839.878 kb on + strand, within DZA65_RS03955 at 840.017 kb on + strand at 840.018 kb on - strand at 840.018 kb on - strand at 840.063 kb on - strand at 840.063 kb on - strand at 840.063 kb on - strand at 840.065 kb on + strand at 840.065 kb on + strand at 840.191 kb on - strand at 840.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 837,317 + DZA65_RS03940 0.78 -1.2 837,318 - DZA65_RS03940 0.78 +0.1 837,318 - DZA65_RS03940 0.78 -0.2 837,321 + DZA65_RS03940 0.78 -1.0 837,321 + DZA65_RS03940 0.78 +1.3 837,322 - DZA65_RS03940 0.78 -0.4 837,335 - DZA65_RS03940 0.80 +0.1 837,343 + DZA65_RS03940 0.81 +0.4 837,343 + DZA65_RS03940 0.81 +0.1 837,343 + DZA65_RS03940 0.81 +0.3 837,363 + DZA65_RS03940 0.84 -0.4 837,363 + DZA65_RS03940 0.84 -1.0 837,363 + DZA65_RS03940 0.84 -0.9 837,364 - DZA65_RS03940 0.84 +1.8 837,364 - DZA65_RS03940 0.84 +1.2 837,364 - DZA65_RS03940 0.84 -1.3 837,364 - DZA65_RS03940 0.84 -0.3 837,364 - DZA65_RS03940 0.84 -0.3 837,384 + DZA65_RS03940 0.87 -0.8 837,385 - DZA65_RS03940 0.87 -0.7 837,385 - DZA65_RS03940 0.87 -0.5 837,438 - +0.4 837,458 + -0.1 837,459 - -0.9 837,459 - +2.1 837,468 - -2.6 837,486 - -1.8 837,525 + -0.5 837,528 + -0.6 837,529 - +0.0 837,540 + -0.5 837,541 - -0.6 837,541 - +0.7 837,541 - -0.2 837,543 - -0.7 837,544 + -0.1 837,570 - -2.5 837,575 + +1.4 837,575 + -0.3 837,575 + +0.3 837,576 - -0.7 837,581 + -0.1 837,581 + -0.5 837,581 + +0.4 837,582 - -0.9 837,582 - -0.8 837,582 - -0.9 837,583 + +0.7 837,583 + +0.6 837,612 + +0.3 837,613 - +1.1 837,613 - +0.4 837,613 - -0.5 837,613 - -1.1 837,613 - -0.6 837,654 + -0.2 837,654 + -0.5 837,655 - -0.6 837,655 - -1.0 837,677 + -0.0 837,713 + +0.4 837,758 + +0.6 837,779 + -0.2 838,307 + -0.9 838,307 + +0.6 838,307 + -0.5 838,307 + -0.9 838,307 + -0.6 838,308 - -0.1 838,308 - -1.2 838,309 + +0.9 838,309 + -0.6 838,309 + +0.2 838,310 - -0.9 838,327 + -0.9 838,412 + DZA65_RS03950 0.11 +0.7 838,412 + DZA65_RS03950 0.11 +0.3 838,412 + DZA65_RS03950 0.11 -1.4 838,412 + DZA65_RS03950 0.11 +0.9 838,413 - DZA65_RS03950 0.11 +0.1 838,413 - DZA65_RS03950 0.11 -0.2 838,413 - DZA65_RS03950 0.11 -1.4 838,425 - DZA65_RS03950 0.12 +0.4 838,425 - DZA65_RS03950 0.12 -0.0 838,425 - DZA65_RS03950 0.12 -0.8 838,459 + DZA65_RS03950 0.16 +0.0 838,460 - DZA65_RS03950 0.16 -0.7 838,460 - DZA65_RS03950 0.16 -0.5 838,460 - DZA65_RS03950 0.16 +0.1 838,460 - DZA65_RS03950 0.16 +0.8 838,579 + DZA65_RS03950 0.29 -2.1 838,579 + DZA65_RS03950 0.29 +1.6 838,580 - DZA65_RS03950 0.29 +0.1 838,589 + DZA65_RS03950 0.30 -1.2 838,589 + DZA65_RS03950 0.30 +0.3 838,589 + DZA65_RS03950 0.30 -0.1 838,590 - DZA65_RS03950 0.30 -0.8 838,659 - DZA65_RS03950 0.38 -1.4 838,659 - DZA65_RS03950 0.38 -0.9 838,668 + DZA65_RS03950 0.39 -0.3 838,668 + DZA65_RS03950 0.39 -0.1 838,668 + DZA65_RS03950 0.39 -0.0 838,668 + DZA65_RS03950 0.39 -1.7 838,668 + DZA65_RS03950 0.39 +1.7 838,668 + DZA65_RS03950 0.39 -1.9 838,668 + DZA65_RS03950 0.39 +0.1 838,669 - DZA65_RS03950 0.39 -1.9 838,669 - DZA65_RS03950 0.39 +0.8 838,669 - DZA65_RS03950 0.39 -0.5 838,669 - DZA65_RS03950 0.39 +0.9 838,669 - DZA65_RS03950 0.39 -0.0 838,669 - DZA65_RS03950 0.39 -0.5 838,669 - DZA65_RS03950 0.39 +1.1 838,669 - DZA65_RS03950 0.39 +1.1 838,669 - DZA65_RS03950 0.39 -0.5 838,669 - DZA65_RS03950 0.39 +0.6 838,669 - DZA65_RS03950 0.39 -0.0 838,669 - DZA65_RS03950 0.39 +1.4 838,669 - DZA65_RS03950 0.39 -0.7 838,669 - DZA65_RS03950 0.39 -2.1 838,689 + DZA65_RS03950 0.41 +0.4 838,690 - DZA65_RS03950 0.41 -1.6 838,721 - DZA65_RS03950 0.44 +1.5 838,766 + DZA65_RS03950 0.49 -0.4 838,766 + DZA65_RS03950 0.49 -1.5 838,767 - DZA65_RS03950 0.49 -0.8 838,767 - DZA65_RS03950 0.49 -0.2 838,767 - DZA65_RS03950 0.49 +0.2 838,768 + DZA65_RS03950 0.50 -0.9 838,768 + DZA65_RS03950 0.50 -2.6 838,768 + DZA65_RS03950 0.50 -1.2 838,768 + DZA65_RS03950 0.50 +0.4 838,769 - DZA65_RS03950 0.50 +0.9 838,769 - DZA65_RS03950 0.50 -0.5 838,769 - DZA65_RS03950 0.50 -1.0 838,769 - DZA65_RS03950 0.50 -1.5 838,789 - DZA65_RS03950 0.52 +0.4 838,795 + DZA65_RS03950 0.53 -0.9 838,795 + DZA65_RS03950 0.53 -1.1 838,796 - DZA65_RS03950 0.53 -0.2 838,796 - DZA65_RS03950 0.53 -0.1 838,799 + DZA65_RS03950 0.53 +0.5 838,799 + DZA65_RS03950 0.53 -0.2 838,799 + DZA65_RS03950 0.53 +1.1 838,799 + DZA65_RS03950 0.53 -1.9 838,799 + DZA65_RS03950 0.53 +2.1 838,799 + DZA65_RS03950 0.53 -0.2 838,799 + DZA65_RS03950 0.53 +0.1 838,799 + DZA65_RS03950 0.53 +0.4 838,799 + +1.5 838,800 - DZA65_RS03950 0.53 -0.6 838,800 - DZA65_RS03950 0.53 +1.1 838,800 - DZA65_RS03950 0.53 -1.5 838,800 - DZA65_RS03950 0.53 -0.5 838,800 - DZA65_RS03950 0.53 -0.4 838,800 - DZA65_RS03950 0.53 -0.3 838,809 + DZA65_RS03950 0.54 -0.2 838,820 + DZA65_RS03950 0.55 +1.1 838,829 - DZA65_RS03950 0.56 -0.5 838,829 - DZA65_RS03950 0.56 -0.2 838,837 + DZA65_RS03950 0.57 -1.2 838,837 + DZA65_RS03950 0.57 +1.6 838,837 + DZA65_RS03950 0.57 -2.4 838,838 - +0.1 838,838 - DZA65_RS03950 0.57 +1.8 838,901 + DZA65_RS03950 0.64 +0.4 838,901 + DZA65_RS03950 0.64 +0.0 838,901 + DZA65_RS03950 0.64 -0.2 838,901 + DZA65_RS03950 0.64 +0.6 838,902 - DZA65_RS03950 0.64 -1.4 838,902 - DZA65_RS03950 0.64 -0.5 838,902 - DZA65_RS03950 0.64 -0.8 838,902 - DZA65_RS03950 0.64 -0.3 838,902 - DZA65_RS03950 0.64 -0.2 838,929 + DZA65_RS03950 0.67 +0.1 838,929 + DZA65_RS03950 0.67 +0.6 838,929 + DZA65_RS03950 0.67 -0.4 838,930 - DZA65_RS03950 0.67 +0.1 838,930 - DZA65_RS03950 0.67 +0.5 838,958 + DZA65_RS03950 0.70 -0.8 838,958 + DZA65_RS03950 0.70 -0.8 838,958 + DZA65_RS03950 0.70 -1.1 838,958 + DZA65_RS03950 0.70 -0.4 838,958 + DZA65_RS03950 0.70 -1.5 838,958 + DZA65_RS03950 0.70 -0.5 838,959 - DZA65_RS03950 0.70 +0.4 838,959 - DZA65_RS03950 0.70 +1.4 838,959 - DZA65_RS03950 0.70 -0.8 838,959 - DZA65_RS03950 0.70 +0.7 839,009 + DZA65_RS03950 0.76 +0.7 839,009 + DZA65_RS03950 0.76 -0.7 839,009 + +0.1 839,009 + DZA65_RS03950 0.76 -0.1 839,009 + DZA65_RS03950 0.76 +0.4 839,010 - DZA65_RS03950 0.76 -1.1 839,010 - DZA65_RS03950 0.76 -0.6 839,019 + DZA65_RS03950 0.77 +0.1 839,019 + DZA65_RS03950 0.77 +0.8 839,020 - DZA65_RS03950 0.77 +0.2 839,020 - DZA65_RS03950 0.77 +1.1 839,020 - DZA65_RS03950 0.77 -0.5 839,034 + DZA65_RS03950 0.79 +0.9 839,072 - DZA65_RS03950 0.83 -0.4 839,137 + DZA65_RS03950 0.90 -1.5 839,138 - DZA65_RS03950 0.90 +1.4 839,138 - DZA65_RS03950 0.90 +0.7 839,145 - -1.1 839,161 - +0.2 839,161 - +0.6 839,193 + +0.5 839,193 + -0.5 839,193 + +0.1 839,246 + -0.4 839,368 + +0.5 839,374 - -1.0 839,421 - -1.4 839,422 + -0.2 839,428 + -0.0 839,428 + +1.4 839,428 + -0.1 839,429 - -1.2 839,510 + -1.4 839,637 - DZA65_RS03955 0.28 -2.2 839,736 - DZA65_RS03955 0.45 -0.5 839,736 - DZA65_RS03955 0.45 -1.2 839,755 + DZA65_RS03955 0.48 +1.1 839,756 - DZA65_RS03955 0.48 -1.1 839,759 - DZA65_RS03955 0.49 -0.0 839,878 + DZA65_RS03955 0.69 +0.1 840,017 + -0.8 840,018 - -0.0 840,018 - +0.1 840,063 - -0.1 840,063 - +1.5 840,063 - -0.2 840,065 + -0.6 840,065 + +1.1 840,191 - -0.4 840,206 + +0.0
Or see this region's nucleotide sequence