Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02340 and DZA65_RS02350 are separated by 396 nucleotides DZA65_RS02350 and DZA65_RS02355 are separated by 245 nucleotides
DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695
_RS02340
DZA65_RS02350: DZA65_RS02350 - LysR family transcriptional regulator, at 507,092 to 508,024
_RS02350
DZA65_RS02355: DZA65_RS02355 - 1-aminocyclopropane-1-carboxylate deaminase, at 508,270 to 509,286
_RS02355
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.274 kb on - strand, within DZA65_RS02340 at 506.431 kb on + strand, within DZA65_RS02340 at 506.432 kb on - strand, within DZA65_RS02340 at 506.467 kb on - strand, within DZA65_RS02340 at 506.572 kb on + strand at 506.708 kb on + strand at 506.708 kb on + strand at 506.709 kb on - strand at 506.718 kb on + strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.848 kb on + strand at 506.853 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.986 kb on - strand at 507.075 kb on + strand at 507.075 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.098 kb on - strand at 507.098 kb on - strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.134 kb on - strand at 507.277 kb on + strand, within DZA65_RS02350 at 507.277 kb on + strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.304 kb on + strand, within DZA65_RS02350 at 507.458 kb on + strand, within DZA65_RS02350 at 507.596 kb on - strand, within DZA65_RS02350 at 507.730 kb on + strand, within DZA65_RS02350 at 507.731 kb on - strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.812 kb on - strand, within DZA65_RS02350 at 507.812 kb on - strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.893 kb on - strand, within DZA65_RS02350 at 507.893 kb on - strand, within DZA65_RS02350 at 507.980 kb on + strand at 507.980 kb on + strand at 507.980 kb on + strand at 507.980 kb on + strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 508.039 kb on - strand at 508.177 kb on - strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.180 kb on - strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.250 kb on - strand at 508.250 kb on - strand at 508.253 kb on + strand at 508.302 kb on - strand at 508.302 kb on - strand at 508.348 kb on + strand at 508.348 kb on + strand at 508.349 kb on - strand at 508.349 kb on - strand at 508.372 kb on + strand, within DZA65_RS02355 at 508.372 kb on + strand, within DZA65_RS02355 at 508.439 kb on - strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.583 kb on - strand, within DZA65_RS02355 at 508.583 kb on - strand, within DZA65_RS02355 at 508.597 kb on + strand, within DZA65_RS02355 at 508.598 kb on - strand, within DZA65_RS02355 at 508.633 kb on - strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.833 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.873 kb on - strand, within DZA65_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 506,171 + DZA65_RS02340 0.63 -0.5 506,171 + DZA65_RS02340 0.63 +1.9 506,171 + DZA65_RS02340 0.63 +0.0 506,171 + DZA65_RS02340 0.63 -1.6 506,171 + DZA65_RS02340 0.63 +1.0 506,171 + DZA65_RS02340 0.63 +0.2 506,171 + DZA65_RS02340 0.63 -0.1 506,171 + DZA65_RS02340 0.63 -1.9 506,171 + DZA65_RS02340 0.63 -1.9 506,171 + DZA65_RS02340 0.63 -0.4 506,172 - DZA65_RS02340 0.63 +0.4 506,172 - DZA65_RS02340 0.63 +0.9 506,172 - DZA65_RS02340 0.63 -1.1 506,172 - DZA65_RS02340 0.63 -0.1 506,172 - DZA65_RS02340 0.63 +1.2 506,172 - DZA65_RS02340 0.63 -0.6 506,172 - DZA65_RS02340 0.63 +1.7 506,273 + DZA65_RS02340 0.70 +0.5 506,273 + DZA65_RS02340 0.70 -0.6 506,273 + DZA65_RS02340 0.70 -0.1 506,273 + DZA65_RS02340 0.70 -1.2 506,273 + DZA65_RS02340 0.70 +1.7 506,274 - DZA65_RS02340 0.70 -1.0 506,431 + DZA65_RS02340 0.81 +1.9 506,432 - DZA65_RS02340 0.81 -0.6 506,467 - DZA65_RS02340 0.84 -0.2 506,572 + +0.3 506,708 + +0.9 506,708 + -0.5 506,709 - -1.3 506,718 + -0.8 506,719 - -1.1 506,719 - -0.5 506,719 - -1.4 506,719 - -0.6 506,719 - -0.4 506,747 + +1.2 506,747 + -0.9 506,747 + +1.8 506,748 - -0.8 506,748 - -0.4 506,748 - -1.1 506,748 - +0.7 506,748 - -0.5 506,758 + -1.4 506,758 + -0.4 506,758 + +1.8 506,759 - -0.9 506,759 - +0.1 506,759 - -0.3 506,848 + -3.1 506,853 + -0.1 506,979 + +0.6 506,979 + -0.4 506,979 + -1.1 506,979 + +0.6 506,980 - -0.4 506,980 - -1.1 506,980 - -2.9 506,980 - +1.6 506,980 - +0.2 506,980 - -0.1 506,986 - -2.0 507,075 + -0.8 507,075 + -1.1 507,086 + -0.4 507,086 + +0.1 507,086 + +0.5 507,086 + -1.1 507,086 + +3.2 507,087 - -0.1 507,087 - +0.2 507,087 - -0.1 507,097 + +0.4 507,097 + +1.6 507,097 + +1.7 507,098 - -0.5 507,098 - +0.6 507,118 + -1.1 507,118 + +0.4 507,118 + -0.2 507,119 - -0.9 507,119 - -0.2 507,119 - -2.1 507,134 - -1.5 507,277 + DZA65_RS02350 0.20 +1.2 507,277 + DZA65_RS02350 0.20 -1.4 507,278 - DZA65_RS02350 0.20 +1.0 507,278 - DZA65_RS02350 0.20 -0.4 507,278 - DZA65_RS02350 0.20 -1.1 507,278 - DZA65_RS02350 0.20 +0.6 507,278 - DZA65_RS02350 0.20 +0.2 507,304 + DZA65_RS02350 0.23 -1.1 507,458 + DZA65_RS02350 0.39 -0.1 507,596 - DZA65_RS02350 0.54 -0.1 507,730 + DZA65_RS02350 0.68 +0.2 507,731 - DZA65_RS02350 0.68 -0.6 507,770 + DZA65_RS02350 0.73 -1.6 507,770 + DZA65_RS02350 0.73 -0.9 507,770 + DZA65_RS02350 0.73 -1.6 507,770 + DZA65_RS02350 0.73 -0.4 507,770 + DZA65_RS02350 0.73 +0.4 507,771 - DZA65_RS02350 0.73 +0.4 507,771 - DZA65_RS02350 0.73 -1.4 507,771 - DZA65_RS02350 0.73 -2.1 507,771 - DZA65_RS02350 0.73 +0.2 507,771 - DZA65_RS02350 0.73 -0.4 507,776 + DZA65_RS02350 0.73 -0.4 507,776 + DZA65_RS02350 0.73 -0.5 507,776 + DZA65_RS02350 0.73 -0.9 507,776 + DZA65_RS02350 0.73 -0.5 507,776 + DZA65_RS02350 0.73 -1.6 507,776 + DZA65_RS02350 0.73 -0.6 507,776 + DZA65_RS02350 0.73 +1.0 507,776 + DZA65_RS02350 0.73 -1.1 507,776 + DZA65_RS02350 0.73 -1.0 507,776 + DZA65_RS02350 0.73 +0.0 507,777 - DZA65_RS02350 0.73 +0.3 507,777 - DZA65_RS02350 0.73 -1.4 507,777 - DZA65_RS02350 0.73 -1.2 507,777 - DZA65_RS02350 0.73 +0.2 507,777 - DZA65_RS02350 0.73 +1.0 507,777 - DZA65_RS02350 0.73 -0.2 507,777 - DZA65_RS02350 0.73 +0.1 507,777 - DZA65_RS02350 0.73 -0.6 507,777 - DZA65_RS02350 0.73 -0.1 507,777 - DZA65_RS02350 0.73 -0.4 507,777 - DZA65_RS02350 0.73 -0.2 507,777 - DZA65_RS02350 0.73 -0.4 507,777 - DZA65_RS02350 0.73 -0.3 507,777 - DZA65_RS02350 0.73 -1.2 507,777 - DZA65_RS02350 0.73 -1.6 507,811 + DZA65_RS02350 0.77 -0.5 507,811 + DZA65_RS02350 0.77 -0.2 507,811 + DZA65_RS02350 0.77 +1.2 507,811 + DZA65_RS02350 0.77 +0.1 507,812 - DZA65_RS02350 0.77 -1.9 507,812 - DZA65_RS02350 0.77 -0.5 507,892 + DZA65_RS02350 0.86 -2.8 507,892 + DZA65_RS02350 0.86 -0.4 507,892 + DZA65_RS02350 0.86 -1.0 507,893 - DZA65_RS02350 0.86 -2.1 507,893 - DZA65_RS02350 0.86 -1.8 507,980 + -2.2 507,980 + +1.2 507,980 + +0.2 507,980 + -2.4 507,981 - -0.1 507,981 - +0.1 507,981 - -0.8 507,981 - -1.0 507,981 - +0.5 508,039 - +0.5 508,177 - +0.5 508,179 + -0.6 508,179 + +1.2 508,179 + -2.2 508,179 + -0.3 508,179 + -2.9 508,180 - -1.8 508,249 + -0.4 508,249 + -0.1 508,249 + -2.5 508,249 + +0.1 508,249 + +0.6 508,249 + +1.0 508,250 - -0.0 508,250 - -0.6 508,253 + +0.4 508,302 - +0.5 508,302 - -0.5 508,348 + -2.1 508,348 + -0.4 508,349 - -1.6 508,349 - +0.6 508,372 + DZA65_RS02355 0.10 -0.1 508,372 + DZA65_RS02355 0.10 -1.6 508,439 - DZA65_RS02355 0.17 -0.6 508,554 + DZA65_RS02355 0.28 +0.3 508,554 + DZA65_RS02355 0.28 -0.2 508,554 + DZA65_RS02355 0.28 +2.2 508,555 - DZA65_RS02355 0.28 +2.2 508,555 - DZA65_RS02355 0.28 -2.5 508,555 - DZA65_RS02355 0.28 -0.4 508,555 - DZA65_RS02355 0.28 -2.5 508,582 + DZA65_RS02355 0.31 +0.9 508,582 + DZA65_RS02355 0.31 -0.4 508,582 + DZA65_RS02355 0.31 +1.4 508,583 - DZA65_RS02355 0.31 -1.4 508,583 - DZA65_RS02355 0.31 +0.6 508,597 + DZA65_RS02355 0.32 -0.7 508,598 - DZA65_RS02355 0.32 +0.4 508,633 - DZA65_RS02355 0.36 +1.4 508,805 + DZA65_RS02355 0.53 -1.8 508,805 + DZA65_RS02355 0.53 -0.3 508,805 + DZA65_RS02355 0.53 +0.9 508,806 - DZA65_RS02355 0.53 -0.2 508,806 - DZA65_RS02355 0.53 -0.9 508,806 - DZA65_RS02355 0.53 -0.4 508,806 - DZA65_RS02355 0.53 -0.0 508,833 + DZA65_RS02355 0.55 -0.3 508,843 + DZA65_RS02355 0.56 -1.8 508,843 + DZA65_RS02355 0.56 -0.1 508,843 + DZA65_RS02355 0.56 +0.9 508,843 + DZA65_RS02355 0.56 -0.8 508,843 + DZA65_RS02355 0.56 -1.6 508,843 + DZA65_RS02355 0.56 +0.5 508,843 + DZA65_RS02355 0.56 -0.9 508,843 + DZA65_RS02355 0.56 +0.2 508,844 - DZA65_RS02355 0.56 -1.4 508,844 - DZA65_RS02355 0.56 -2.1 508,844 - DZA65_RS02355 0.56 -0.4 508,844 - DZA65_RS02355 0.56 +1.2 508,844 - DZA65_RS02355 0.56 +1.2 508,844 - DZA65_RS02355 0.56 +1.7 508,844 - DZA65_RS02355 0.56 -0.0 508,844 - DZA65_RS02355 0.56 -0.3 508,844 - DZA65_RS02355 0.56 +1.0 508,844 - DZA65_RS02355 0.56 +2.2 508,844 - DZA65_RS02355 0.56 +0.9 508,844 - DZA65_RS02355 0.56 -0.8 508,844 - DZA65_RS02355 0.56 -0.1 508,844 - DZA65_RS02355 0.56 +1.0 508,844 - DZA65_RS02355 0.56 +0.1 508,844 - DZA65_RS02355 0.56 +0.2 508,844 - DZA65_RS02355 0.56 +0.3 508,845 + DZA65_RS02355 0.57 -1.1 508,845 + DZA65_RS02355 0.57 -0.4 508,845 + DZA65_RS02355 0.57 +1.5 508,845 + DZA65_RS02355 0.57 -0.9 508,846 - DZA65_RS02355 0.57 -0.1 508,846 - DZA65_RS02355 0.57 +0.2 508,846 - DZA65_RS02355 0.57 +1.8 508,846 - DZA65_RS02355 0.57 +0.1 508,873 - DZA65_RS02355 0.59 +1.0
Or see this region's nucleotide sequence