Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01910

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01905 and DZA65_RS01910 are separated by 102 nucleotidesDZA65_RS01910 and DZA65_RS01915 are separated by 54 nucleotidesDZA65_RS01915 and DZA65_RS01920 overlap by 4 nucleotides DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896 _RS01905 DZA65_RS01910: DZA65_RS01910 - Hcp family type VI secretion system effector, at 420,999 to 421,478 _RS01910 DZA65_RS01915: DZA65_RS01915 - hypothetical protein, at 421,533 to 422,132 _RS01915 DZA65_RS01920: DZA65_RS01920 - DUF1311 domain-containing protein, at 422,129 to 422,509 _RS01920 Position (kb) 420 421 422Strain fitness (log2 ratio) -2 -1 0 1 2 3at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.064 kb on + strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.293 kb on - strand, within DZA65_RS01905at 420.560 kb on - strand, within DZA65_RS01905at 420.597 kb on - strand, within DZA65_RS01905at 420.693 kb on + strand, within DZA65_RS01905at 420.693 kb on + strand, within DZA65_RS01905at 420.694 kb on - strand, within DZA65_RS01905at 420.694 kb on - strand, within DZA65_RS01905at 420.716 kb on - strand, within DZA65_RS01905at 420.820 kb on - strandat 420.894 kb on + strandat 420.895 kb on - strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.939 kb on + strandat 420.940 kb on - strandat 420.968 kb on - strandat 420.973 kb on + strandat 420.973 kb on + strandat 420.977 kb on + strandat 420.977 kb on + strandat 420.981 kb on + strandat 420.998 kb on + strandat 420.998 kb on + strandat 421.011 kb on - strandat 421.011 kb on - strandat 421.114 kb on + strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.121 kb on - strand, within DZA65_RS01910at 421.139 kb on + strand, within DZA65_RS01910at 421.139 kb on + strand, within DZA65_RS01910at 421.140 kb on - strand, within DZA65_RS01910at 421.217 kb on + strand, within DZA65_RS01910at 421.218 kb on - strand, within DZA65_RS01910at 421.223 kb on + strand, within DZA65_RS01910at 421.226 kb on + strand, within DZA65_RS01910at 421.250 kb on + strand, within DZA65_RS01910at 421.358 kb on + strand, within DZA65_RS01910at 421.384 kb on - strand, within DZA65_RS01910at 421.395 kb on - strand, within DZA65_RS01910at 421.449 kb on + strandat 421.450 kb on - strandat 421.451 kb on + strandat 421.452 kb on - strandat 421.454 kb on + strandat 421.454 kb on + strandat 421.454 kb on + strandat 421.455 kb on - strandat 421.455 kb on - strandat 421.517 kb on + strandat 421.519 kb on + strandat 421.519 kb on + strandat 421.521 kb on + strandat 421.634 kb on + strand, within DZA65_RS01915at 421.634 kb on + strand, within DZA65_RS01915at 421.635 kb on - strand, within DZA65_RS01915at 421.635 kb on - strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.713 kb on + strand, within DZA65_RS01915at 421.714 kb on - strand, within DZA65_RS01915at 421.714 kb on - strand, within DZA65_RS01915at 421.745 kb on + strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.854 kb on - strand, within DZA65_RS01915at 421.880 kb on - strand, within DZA65_RS01915at 421.895 kb on + strand, within DZA65_RS01915at 421.917 kb on - strand, within DZA65_RS01915at 421.969 kb on + strand, within DZA65_RS01915at 422.219 kb on + strand, within DZA65_RS01920at 422.221 kb on + strand, within DZA65_RS01920at 422.445 kb on - strand, within DZA65_RS01920at 422.455 kb on + strand, within DZA65_RS01920at 422.456 kb on - strand, within DZA65_RS01920at 422.456 kb on - strand, within DZA65_RS01920at 422.462 kb on - strand, within DZA65_RS01920

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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420,048 + DZA65_RS01905 0.47 -0.9
420,048 + DZA65_RS01905 0.47 -0.2
420,048 + DZA65_RS01905 0.47 -0.5
420,048 + DZA65_RS01905 0.47 -0.2
420,048 + DZA65_RS01905 0.47 +1.3
420,048 + DZA65_RS01905 0.47 +0.7
420,049 - DZA65_RS01905 0.47 -0.4
420,049 - DZA65_RS01905 0.47 +1.3
420,049 - DZA65_RS01905 0.47 -0.1
420,064 + DZA65_RS01905 0.48 +1.5
420,065 - DZA65_RS01905 0.48 +0.1
420,065 - DZA65_RS01905 0.48 -0.7
420,065 - DZA65_RS01905 0.48 +0.9
420,293 - DZA65_RS01905 0.62 +0.2
420,560 - DZA65_RS01905 0.79 -0.9
420,597 - DZA65_RS01905 0.81 -1.7
420,693 + DZA65_RS01905 0.87 +0.8
420,693 + DZA65_RS01905 0.87 -0.3
420,694 - DZA65_RS01905 0.87 -1.6
420,694 - DZA65_RS01905 0.87 +0.1
420,716 - DZA65_RS01905 0.89 -0.7
420,820 - -0.6
420,894 + -0.3
420,895 - -0.3
420,925 + -0.1
420,925 + +0.8
420,925 + -0.3
420,925 + -2.3
420,925 + +0.7
420,925 + -0.6
420,925 + +0.6
420,925 + -0.6
420,926 - -0.1
420,926 - +0.8
420,926 - +0.4
420,926 - -0.7
420,926 - -0.0
420,927 + -0.6
420,927 + -1.4
420,927 + -0.1
420,927 + -1.2
420,927 + -0.9
420,928 - -1.9
420,928 - +0.5
420,928 - -1.7
420,928 - +0.3
420,928 - -0.7
420,928 - +0.0
420,928 - -1.3
420,928 - -0.6
420,939 + +0.1
420,940 - -0.6
420,968 - -1.3
420,973 + -0.7
420,973 + +0.9
420,977 + +0.7
420,977 + -0.9
420,981 + +0.8
420,998 + -0.8
420,998 + +0.3
421,011 - +0.9
421,011 - +1.1
421,114 + DZA65_RS01910 0.24 -0.3
421,115 - DZA65_RS01910 0.24 -0.6
421,115 - DZA65_RS01910 0.24 -0.1
421,115 - DZA65_RS01910 0.24 -0.0
421,121 - DZA65_RS01910 0.25 -0.9
421,139 + DZA65_RS01910 0.29 -0.7
421,139 + DZA65_RS01910 0.29 +0.1
421,140 - DZA65_RS01910 0.29 -2.3
421,217 + DZA65_RS01910 0.45 -0.7
421,218 - DZA65_RS01910 0.46 -1.7
421,223 + DZA65_RS01910 0.47 +0.1
421,226 + DZA65_RS01910 0.47 -0.3
421,250 + DZA65_RS01910 0.52 -0.6
421,358 + DZA65_RS01910 0.75 -1.7
421,384 - DZA65_RS01910 0.80 -0.6
421,395 - DZA65_RS01910 0.82 +0.8
421,449 + -0.3
421,450 - +0.0
421,451 + +0.3
421,452 - +1.5
421,454 + +0.6
421,454 + -1.4
421,454 + -0.7
421,455 - -1.3
421,455 - -0.3
421,517 + +0.0
421,519 + +0.1
421,519 + +1.3
421,521 + -0.3
421,634 + DZA65_RS01915 0.17 -0.5
421,634 + DZA65_RS01915 0.17 -0.1
421,635 - DZA65_RS01915 0.17 +0.8
421,635 - DZA65_RS01915 0.17 +0.3
421,710 + DZA65_RS01915 0.29 -0.6
421,710 + DZA65_RS01915 0.29 +0.4
421,710 + DZA65_RS01915 0.29 -1.0
421,710 + DZA65_RS01915 0.29 +0.5
421,710 + DZA65_RS01915 0.29 +0.0
421,710 + DZA65_RS01915 0.29 -1.9
421,710 + DZA65_RS01915 0.29 -0.5
421,711 - DZA65_RS01915 0.30 +1.3
421,711 - DZA65_RS01915 0.30 -0.1
421,711 - DZA65_RS01915 0.30 -1.3
421,711 - DZA65_RS01915 0.30 +1.6
421,711 - DZA65_RS01915 0.30 -1.1
421,711 - DZA65_RS01915 0.30 -0.6
421,713 + DZA65_RS01915 0.30 +0.6
421,714 - DZA65_RS01915 0.30 +0.4
421,714 - DZA65_RS01915 0.30 -1.0
421,745 + DZA65_RS01915 0.35 -0.3
421,821 - DZA65_RS01915 0.48 -1.7
421,821 - DZA65_RS01915 0.48 +1.4
421,821 - DZA65_RS01915 0.48 -0.4
421,821 - DZA65_RS01915 0.48 +0.3
421,854 - DZA65_RS01915 0.54 -0.1
421,880 - DZA65_RS01915 0.58 -0.0
421,895 + DZA65_RS01915 0.60 -0.6
421,917 - DZA65_RS01915 0.64 +0.4
421,969 + DZA65_RS01915 0.73 +0.1
422,219 + DZA65_RS01920 0.24 +0.8
422,221 + DZA65_RS01920 0.24 -0.3
422,445 - DZA65_RS01920 0.83 +0.4
422,455 + DZA65_RS01920 0.86 -0.1
422,456 - DZA65_RS01920 0.86 -1.3
422,456 - DZA65_RS01920 0.86 -1.1
422,462 - DZA65_RS01920 0.87 +3.6

Or see this region's nucleotide sequence