Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01265

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01260 and DZA65_RS01265 are separated by 598 nucleotidesDZA65_RS01265 and DZA65_RS01270 are separated by 82 nucleotidesDZA65_RS01270 and DZA65_RS01275 are separated by 185 nucleotides DZA65_RS01260: DZA65_RS01260 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 279,888 to 281,477 _RS01260 DZA65_RS01265: DZA65_RS01265 - 16S ribosomal RNA, at 282,076 to 283,623 _RS01265 DZA65_RS01270: DZA65_RS01270 - tRNA-Glu, at 283,706 to 283,781 _RS01270 DZA65_RS01275: DZA65_RS01275 - 23S ribosomal RNA, at 283,967 to 286,990 _RS01275 Position (kb) 282 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 281.081 kb on + strand, within DZA65_RS01260at 281.081 kb on + strand, within DZA65_RS01260at 281.082 kb on - strand, within DZA65_RS01260at 281.138 kb on + strand, within DZA65_RS01260at 281.162 kb on - strand, within DZA65_RS01260at 281.168 kb on + strand, within DZA65_RS01260at 281.196 kb on - strand, within DZA65_RS01260at 281.308 kb on + strand, within DZA65_RS01260at 281.436 kb on + strandat 281.436 kb on + strandat 281.437 kb on - strandat 281.437 kb on - strandat 281.459 kb on + strandat 281.498 kb on + strandat 281.498 kb on + strandat 281.498 kb on + strandat 281.499 kb on - strandat 281.499 kb on - strandat 281.499 kb on - strandat 281.499 kb on - strandat 281.499 kb on - strandat 281.499 kb on - strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.507 kb on - strandat 281.507 kb on - strandat 281.507 kb on - strandat 281.507 kb on - strandat 281.511 kb on + strandat 281.512 kb on - strandat 281.521 kb on + strandat 281.529 kb on + strandat 281.529 kb on + strandat 281.529 kb on + strandat 281.529 kb on + strandat 281.543 kb on + strandat 281.544 kb on - strandat 281.579 kb on + strandat 281.580 kb on - strandat 281.595 kb on - strandat 281.694 kb on - strandat 281.698 kb on + strandat 281.699 kb on - strandat 281.699 kb on - strandat 281.699 kb on - strandat 281.700 kb on + strandat 281.701 kb on - strandat 281.701 kb on - strandat 281.741 kb on + strandat 281.780 kb on - strandat 281.780 kb on - strandat 281.780 kb on - strandat 281.782 kb on - strandat 281.782 kb on - strandat 281.782 kb on - strandat 281.782 kb on - strandat 281.877 kb on - strandat 281.877 kb on - strandat 281.877 kb on - strandat 281.877 kb on - strandat 281.877 kb on - strandat 281.877 kb on - strandat 282.327 kb on + strand, within DZA65_RS01265

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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281,081 + DZA65_RS01260 0.75 -0.3
281,081 + DZA65_RS01260 0.75 +0.1
281,082 - DZA65_RS01260 0.75 -2.1
281,138 + DZA65_RS01260 0.79 -1.8
281,162 - DZA65_RS01260 0.80 -1.5
281,168 + DZA65_RS01260 0.81 -2.9
281,196 - DZA65_RS01260 0.82 -1.7
281,308 + DZA65_RS01260 0.89 -1.8
281,436 + -2.0
281,436 + -1.3
281,437 - -2.1
281,437 - -0.7
281,459 + -1.5
281,498 + -0.5
281,498 + -4.2
281,498 + -2.3
281,499 - +0.6
281,499 - -0.5
281,499 - +0.5
281,499 - -0.5
281,499 - -2.1
281,499 - -0.7
281,506 + -0.9
281,506 + -0.6
281,506 + -1.3
281,506 + -1.1
281,507 - -2.0
281,507 - -2.6
281,507 - -0.4
281,507 - +1.6
281,511 + -1.7
281,512 - +0.2
281,521 + -0.7
281,529 + -0.3
281,529 + -2.4
281,529 + -0.2
281,529 + -0.6
281,543 + +2.3
281,544 - -1.3
281,579 + -1.4
281,580 - +0.2
281,595 - -1.3
281,694 - +1.1
281,698 + -1.0
281,699 - -1.8
281,699 - -0.5
281,699 - -1.0
281,700 + +0.9
281,701 - +0.6
281,701 - -1.3
281,741 + -0.5
281,780 - -0.6
281,780 - +1.0
281,780 - -0.8
281,782 - -0.9
281,782 - -0.7
281,782 - +1.3
281,782 - +0.0
281,877 - -0.5
281,877 - +1.0
281,877 - -1.3
281,877 - -0.6
281,877 - +0.2
281,877 - -0.5
282,327 + DZA65_RS01265 0.16 -0.6

Or see this region's nucleotide sequence