Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides DZA65_RS01065 and DZA65_RS01070 are separated by 82 nucleotides DZA65_RS01070 and DZA65_RS01075 are separated by 185 nucleotides
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
DZA65_RS01070: DZA65_RS01070 - tRNA-Glu, at 242,020 to 242,095
_RS01070
DZA65_RS01075: DZA65_RS01075 - 23S ribosomal RNA, at 242,281 to 245,304
_RS01075
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.419 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.456 kb on + strand at 239.463 kb on + strand at 239.463 kb on + strand at 239.464 kb on - strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.488 kb on - strand at 240.014 kb on + strand at 240.075 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.105 kb on - strand at 240.105 kb on - strand at 240.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 239,419 + -3.0 239,419 + -0.7 239,419 + +1.1 239,420 - -1.5 239,420 - -1.8 239,420 - -1.3 239,430 + -1.1 239,430 + -0.3 239,430 + +0.1 239,431 - +0.7 239,431 - -0.8 239,431 - -0.7 239,434 + -3.3 239,434 + -1.5 239,435 - -0.5 239,435 - -1.4 239,435 - -0.9 239,456 + +0.5 239,463 + -0.7 239,463 + -0.4 239,464 - -0.1 239,476 + -1.8 239,476 + -1.7 239,476 + +0.3 239,477 - -1.7 239,477 - +1.6 239,477 - +0.5 239,477 - +0.3 239,477 - -0.7 239,487 + -1.3 239,487 + +1.2 239,487 + -0.3 239,488 - -0.7 240,014 + -1.3 240,075 - -1.3 240,103 - +0.7 240,103 - +1.6 240,103 - -1.8 240,103 - +0.2 240,103 - -1.4 240,103 - +0.7 240,103 - +0.3 240,103 - -0.3 240,105 - +0.4 240,105 - +0.5 240,559 + +2.1
Or see this region's nucleotide sequence