Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00850

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00840 and DZA65_RS00845 are separated by 99 nucleotidesDZA65_RS00845 and DZA65_RS00850 overlap by 1 nucleotidesDZA65_RS00850 and DZA65_RS00855 are separated by 118 nucleotides DZA65_RS00840: DZA65_RS00840 - rhodanese-like domain-containing protein, at 188,801 to 189,232 _RS00840 DZA65_RS00845: DZA65_RS00845 - protein-export chaperone SecB, at 189,332 to 189,802 _RS00845 DZA65_RS00850: DZA65_RS00850 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 189,802 to 190,821 _RS00850 DZA65_RS00855: DZA65_RS00855 - serine O-acetyltransferase, at 190,940 to 191,761 _RS00855 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.812 kb on + strandat 188.812 kb on + strandat 188.812 kb on + strandat 188.812 kb on + strandat 188.812 kb on + strandat 188.813 kb on - strandat 188.884 kb on + strand, within DZA65_RS00840at 188.896 kb on + strand, within DZA65_RS00840at 188.896 kb on + strand, within DZA65_RS00840at 188.897 kb on - strand, within DZA65_RS00840at 188.947 kb on + strand, within DZA65_RS00840at 188.948 kb on - strand, within DZA65_RS00840at 188.950 kb on + strand, within DZA65_RS00840at 188.970 kb on + strand, within DZA65_RS00840at 189.007 kb on + strand, within DZA65_RS00840at 189.007 kb on + strand, within DZA65_RS00840at 189.007 kb on + strand, within DZA65_RS00840at 189.008 kb on - strand, within DZA65_RS00840at 189.267 kb on + strandat 189.267 kb on + strandat 189.376 kb on + strandat 189.377 kb on - strandat 189.380 kb on + strand, within DZA65_RS00845at 189.749 kb on + strand, within DZA65_RS00845at 189.749 kb on + strand, within DZA65_RS00845at 189.749 kb on + strand, within DZA65_RS00845at 189.749 kb on + strand, within DZA65_RS00845at 189.822 kb on + strandat 189.822 kb on + strandat 189.823 kb on - strandat 190.830 kb on + strandat 190.830 kb on + strandat 190.833 kb on + strandat 190.834 kb on - strandat 190.834 kb on - strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.868 kb on + strandat 190.869 kb on - strandat 190.876 kb on + strandat 190.876 kb on + strandat 190.891 kb on + strandat 191.690 kb on - strandat 191.714 kb on + strandat 191.715 kb on - strandat 191.715 kb on - strandat 191.762 kb on + strandat 191.762 kb on + strandat 191.762 kb on + strandat 191.762 kb on + strandat 191.762 kb on + strandat 191.763 kb on - strandat 191.763 kb on - strandat 191.763 kb on - strandat 191.763 kb on - strandat 191.763 kb on - strandat 191.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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188,812 + +0.0
188,812 + -0.8
188,812 + -0.2
188,812 + -0.3
188,812 + -1.5
188,813 - -1.5
188,884 + DZA65_RS00840 0.19 -0.5
188,896 + DZA65_RS00840 0.22 +0.1
188,896 + DZA65_RS00840 0.22 -1.1
188,897 - DZA65_RS00840 0.22 -1.0
188,947 + DZA65_RS00840 0.34 -0.7
188,948 - DZA65_RS00840 0.34 -0.7
188,950 + DZA65_RS00840 0.34 +0.3
188,970 + DZA65_RS00840 0.39 -0.2
189,007 + DZA65_RS00840 0.48 -0.5
189,007 + DZA65_RS00840 0.48 -0.9
189,007 + DZA65_RS00840 0.48 -0.7
189,008 - DZA65_RS00840 0.48 +1.3
189,267 + -1.7
189,267 + +1.1
189,376 + +0.3
189,377 - +0.9
189,380 + DZA65_RS00845 0.10 -0.7
189,749 + DZA65_RS00845 0.89 -1.0
189,749 + DZA65_RS00845 0.89 +1.0
189,749 + DZA65_RS00845 0.89 +2.0
189,749 + DZA65_RS00845 0.89 -0.7
189,822 + -0.4
189,822 + +2.7
189,823 - -0.7
190,830 + -0.6
190,830 + -0.7
190,833 + +0.3
190,834 - +0.3
190,834 - -1.2
190,868 + +1.1
190,868 + -1.2
190,868 + -0.8
190,868 + -1.7
190,868 + -1.7
190,868 + -0.9
190,868 + -0.5
190,868 + -1.7
190,869 - +0.0
190,876 + +0.5
190,876 + -1.0
190,891 + -0.7
191,690 - -3.3
191,714 + -0.7
191,715 - -0.1
191,715 - +0.7
191,762 + -0.4
191,762 + -0.7
191,762 + +2.1
191,762 + -0.2
191,762 + -0.8
191,763 - +0.5
191,763 - -0.2
191,763 - +1.3
191,763 - -0.7
191,763 - -1.3
191,763 - -1.1

Or see this region's nucleotide sequence