Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21985

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
				remove
4,752,723	+	DZA65_RS21980	0.21	+0.1
4,752,723	+	DZA65_RS21980	0.21	+0.3
4,752,723	+	DZA65_RS21980	0.21	-1.6
4,752,723	+	DZA65_RS21980	0.21	+0.1
4,752,724	-	DZA65_RS21980	0.21	-1.2
4,752,724	-	DZA65_RS21980	0.21	+0.9
4,752,724	-	DZA65_RS21980	0.21	-0.3
4,752,724	-	DZA65_RS21980	0.21	-0.2
4,752,724	-	DZA65_RS21980	0.21	+0.4
4,752,724	-	DZA65_RS21980	0.21	+1.4
4,752,774	+	DZA65_RS21980	0.29	-0.7
4,752,774	+	DZA65_RS21980	0.29	+0.2
4,752,774	+	DZA65_RS21980	0.29	-0.0
4,752,774	+	DZA65_RS21980	0.29	-0.9
4,752,774	+	DZA65_RS21980	0.29	-2.1
4,752,775	-	DZA65_RS21980	0.29	-3.1
4,752,775	-	DZA65_RS21980	0.29	-1.9
4,752,775	-	DZA65_RS21980	0.29	+0.1
4,752,775	-	DZA65_RS21980	0.29	-0.8
4,752,775	-	DZA65_RS21980	0.29	+0.3
4,752,963	+	DZA65_RS21980	0.56	+0.3
4,752,963	+	DZA65_RS21980	0.56	-1.1
4,752,964	-	DZA65_RS21980	0.56	+0.0
4,752,982	+	DZA65_RS21980	0.58	-1.6
4,752,993	-	DZA65_RS21980	0.60	+0.8
4,752,993	-	DZA65_RS21980	0.60	-0.2
4,753,053	+	DZA65_RS21980	0.69	-0.2
4,753,053	+	DZA65_RS21980	0.69	-1.5
4,753,054	-	DZA65_RS21980	0.69	-0.6
4,753,054	-	DZA65_RS21980	0.69	-2.7
4,753,054	-	DZA65_RS21980	0.69	+0.5
4,753,054	-	DZA65_RS21980	0.69	-0.4
4,753,054	-	DZA65_RS21980	0.69	+0.3
4,753,054	-	DZA65_RS21980	0.69	-0.2
4,753,210	+			+1.2
4,753,210	+			+0.4
4,753,210	+			+1.7
4,753,211	-			+0.7
4,753,211	-			-0.6
4,753,211	-			-0.8
4,753,211	-			-0.7
4,753,262	+			+0.6
4,753,263	-			+0.7
4,753,263	-			-1.8
4,753,270	+			+0.8
4,753,271	-			-0.9
4,753,301	+			+0.5
4,753,301	+			-0.3
4,753,301	+			-1.6
4,753,301	+			+0.4
4,753,301	+			+0.7
4,753,302	-			-0.8
4,753,302	-			+0.1
4,753,302	-			-0.4
4,753,302	-			+0.5
4,753,302	-			-2.8
4,753,303	+			-1.6
4,753,303	+			-0.0
4,753,303	+			+0.7
4,753,303	+			-1.8
4,753,304	-			-0.4
4,753,304	-			+0.3
4,753,309	+			-0.9
4,753,309	+			+1.4
4,753,309	+			-0.3
4,753,309	+			+0.5
4,753,309	+			-0.1
4,753,309	+			+0.0
4,753,309	+			+1.1
4,753,309	+			+0.1
4,753,309	+			-1.8
4,753,309	+			-2.1
4,753,309	+			-2.2
4,753,309	+			-0.6
4,753,310	-			-1.5
4,753,310	-			+0.4
4,753,310	-			-0.5
4,753,310	-			+1.9
4,753,310	-			-0.2
4,753,310	-			-1.9
4,753,310	-			-0.9
4,753,310	-			-0.4
4,753,310	-			-1.6
4,753,310	-			-1.4
4,753,310	-			+1.1
4,753,316	+			-0.2
4,753,317	-			+0.4
4,753,317	-			-1.5
4,753,317	-			+0.1
4,753,318	+			-1.5
4,753,319	-			-0.0
4,753,319	-			-0.6
4,753,331	+			-2.3
4,753,333	+			+0.9
4,753,333	+			+0.9
4,753,333	+			+0.8
4,753,333	+			-0.6
4,753,334	-			-1.6
4,753,334	-			+0.7
4,753,334	-			-0.4
4,753,334	-			+1.8
4,753,334	-			-0.7
4,753,334	-			-0.4
4,753,334	-			-0.9
4,753,339	+			-0.4
4,753,339	+			-0.8
4,753,339	+			-0.3
4,753,339	+			+0.2
4,753,339	+			-0.5
4,753,339	+			-1.9
4,753,339	+			-0.4
4,753,339	+			-1.2
4,753,339	+			+1.8
4,753,339	+			-0.9
4,753,339	+			-0.2
4,753,339	+			+0.0
4,753,339	+			+0.4
4,753,339	+			-0.8
4,753,339	+			-0.7
4,753,340	-			-0.0
4,753,340	-			-0.9
4,753,340	-			+0.7
4,753,340	-			-1.3
4,753,340	-			-1.2
4,753,340	-			-0.4
4,753,340	-			+0.0
4,753,340	-			-2.0
4,753,340	-			-1.6
4,753,340	-			-1.1
4,753,346	+			-0.6
4,753,347	-			-0.2
4,753,348	+			+0.2
4,753,348	+			+1.1
4,753,348	+			+0.2
4,753,349	-			+1.0
4,753,349	-			-1.6
4,753,349	-			-1.2
4,753,349	-			+0.5
4,753,354	+			-0.5
4,753,354	+			+2.1
4,753,355	-			-0.8
4,753,355	-			+0.0
4,753,367	+			+0.1
4,753,367	+			+0.4
4,753,367	+			-2.2
4,753,368	-			+0.2
4,753,368	-			-0.6
4,753,368	-			-0.3
4,753,368	-			-1.4
4,753,372	+			+0.9
4,753,395	+			+0.9
4,753,395	+			+1.0
4,753,396	-			+0.3
4,753,399	+			+0.1
4,753,399	+			-0.3
4,753,456	+			-0.3
4,753,488	+			-1.6
4,753,488	+			-0.1
4,753,489	-			+0.9
4,753,489	-			-0.2
4,753,489	-			+1.5
4,753,489	-			+0.0
4,753,553	+			+0.7
4,753,553	+			+1.1
4,753,553	+			+0.3
4,753,553	+			-1.1
4,753,553	+			-0.1
4,753,553	+			-0.4
4,753,554	-			+0.2
4,753,554	-			-0.2
4,753,554	-			+0.2
4,753,554	-			+1.4
4,753,629	+			+0.1
4,753,629	+			+0.2
4,753,630	-			+3.1
4,753,630	-			+0.7
4,753,638	+			+0.3
4,753,638	+			+1.7
4,753,638	+			-0.9
4,753,638	+			-1.9
4,753,639	-			-0.6
4,753,639	-			-0.0
4,753,639	-			+2.0
4,753,639	-			+0.8
4,753,639	-			-0.8
4,753,639	-			-0.9
4,753,640	+			+0.9
4,753,640	+			-0.4
4,753,640	+			+0.5
4,753,640	+			+2.4
4,753,640	+			-0.8
4,753,640	+			+0.2
4,753,640	+			-2.1
4,753,640	+			-1.3
4,753,640	+			+0.1
4,753,640	+			-0.5
4,753,640	+			-0.4
4,753,640	+			+1.1
4,753,641	-			-0.3
4,753,641	-			+0.7
4,753,641	-			+2.0
4,753,641	-			-0.5
4,753,641	-			-1.8
4,753,641	-			-0.2
4,753,641	-			-0.2
4,753,641	-			-2.6
4,753,641	-			-0.2
4,753,641	-			+0.2
4,753,641	-			+0.1
4,753,641	-			+1.4
4,753,642	+			-1.2
4,753,642	+			-0.4
4,753,642	+			-0.8
4,753,642	+			-0.2
4,753,642	+			+1.1
4,753,642	+			+0.1
4,753,642	+			-0.7
4,753,642	+			+0.2
4,753,642	+			+0.7
4,753,642	+			-0.3
4,753,642	+			+0.1
4,753,642	+			-0.2
4,753,642	+			-0.5
4,753,642	+			-0.4
4,753,642	+			+1.4
4,753,642	+			-0.3
4,753,642	+			+0.5
4,753,642	+			-1.3
4,753,642	+			+1.1
4,753,642	+			-1.1
4,753,642	+			+0.2
4,753,643	-			-1.1
4,753,643	-			-1.3
4,753,643	-			+0.2
4,753,643	-			-1.5
4,753,643	-			-0.8
4,753,643	-			+1.4
4,753,643	-			-0.9
4,753,643	-			-1.2
4,753,643	-			-1.4
4,753,643	-			-1.3
4,753,643	-			+0.7
4,753,643	-			+1.4
4,753,643	-			+0.1
4,753,643	-			-0.2
4,753,643	-			+0.2
4,753,643	-			+0.1
4,753,643	-			-0.9
4,753,643	-			+1.0
4,753,647	+			+1.9
4,753,647	+			+0.1
4,753,647	+			-0.7
4,753,661	-			-0.2
4,753,795	+	DZA65_RS21985	0.11	-0.3
4,753,795	+	DZA65_RS21985	0.11	+1.1
4,753,796	-	DZA65_RS21985	0.11	+1.3
4,753,796	-	DZA65_RS21985	0.11	+0.2
4,753,861	-	DZA65_RS21985	0.17	+0.3
4,753,861	-	DZA65_RS21985	0.17	-1.7
4,753,893	-	DZA65_RS21985	0.20	+1.4
4,753,901	+	DZA65_RS21985	0.20	-0.8
4,753,901	+	DZA65_RS21985	0.20	+0.9
4,753,901	+	DZA65_RS21985	0.20	+1.6
4,753,901	+	DZA65_RS21985	0.20	-0.6
4,753,902	-	DZA65_RS21985	0.20	+0.3
4,753,902	-	DZA65_RS21985	0.20	+0.4
4,753,902	-	DZA65_RS21985	0.20	+0.2
4,753,913	+	DZA65_RS21985	0.21	-0.6
4,753,913	+	DZA65_RS21985	0.21	+1.0
4,753,913	+	DZA65_RS21985	0.21	+0.6
4,753,914	-	DZA65_RS21985	0.21	-1.3
4,753,914	-	DZA65_RS21985	0.21	+0.4
4,753,914	-	DZA65_RS21985	0.21	+0.7
4,753,914	-	DZA65_RS21985	0.21	+0.4
4,753,930	+	DZA65_RS21985	0.23	+0.2
4,753,930	+	DZA65_RS21985	0.23	+0.8
4,753,931	-	DZA65_RS21985	0.23	+0.9
4,753,931	-	DZA65_RS21985	0.23	+0.2
4,753,964	+	DZA65_RS21985	0.26	+0.1
4,753,964	+	DZA65_RS21985	0.26	-1.4
4,753,964	+	DZA65_RS21985	0.26	+1.2
4,753,965	-	DZA65_RS21985	0.26	+0.5
4,753,965	-	DZA65_RS21985	0.26	-0.3
4,753,965	-	DZA65_RS21985	0.26	+1.8
4,754,010	-	DZA65_RS21985	0.29	-0.1
4,754,108	+	DZA65_RS21985	0.38	-0.6
4,754,109	-	DZA65_RS21985	0.38	+1.0
4,754,141	+	DZA65_RS21985	0.41	+3.6
4,754,141	+	DZA65_RS21985	0.41	+1.4
4,754,141	+	DZA65_RS21985	0.41	-1.4
4,754,142	-	DZA65_RS21985	0.41	+0.2
4,754,142	-	DZA65_RS21985	0.41	+0.1
4,754,142	-	DZA65_RS21985	0.41	+0.0
4,754,142	-	DZA65_RS21985	0.41	+0.7
4,754,142	-	DZA65_RS21985	0.41	+1.2
4,754,142	-	DZA65_RS21985	0.41	-1.4
4,754,142	-	DZA65_RS21985	0.41	-1.9
4,754,189	-	DZA65_RS21985	0.45	-0.1
4,754,258	+	DZA65_RS21985	0.50	-0.3
4,754,259	-	DZA65_RS21985	0.50	+0.4
4,754,259	-	DZA65_RS21985	0.50	-0.3
4,754,419	+	DZA65_RS21985	0.64	-0.6
4,754,419	+	DZA65_RS21985	0.64	-0.0
4,754,420	-	DZA65_RS21985	0.64	-0.0
4,754,420	-	DZA65_RS21985	0.64	-1.2
4,754,420	-	DZA65_RS21985	0.64	+1.7
4,754,420	-	DZA65_RS21985	0.64	-0.3
4,754,420	-	DZA65_RS21985	0.64	+0.4
4,754,420	-	DZA65_RS21985	0.64	+0.4
4,754,420	-	DZA65_RS21985	0.64	-0.3
4,754,420	-	DZA65_RS21985	0.64	+0.8
4,754,474	-	DZA65_RS21985	0.69	+0.9
4,754,474	-	DZA65_RS21985	0.69	-0.2
4,754,483	+	DZA65_RS21985	0.69	-0.0
4,754,484	-	DZA65_RS21985	0.69	-0.6
4,754,686	+	DZA65_RS21985	0.86	-0.3
4,754,686	+	DZA65_RS21985	0.86	-0.8
4,754,687	-	DZA65_RS21985	0.87	-0.4
4,754,687	-	DZA65_RS21985	0.87	-0.2
4,754,687	-	DZA65_RS21985	0.87	-0.6
4,754,860	+			-0.6
4,754,860	+			-0.6
4,754,860	+			-0.9
4,754,861	-			-1.3
4,754,861	-			-2.9
4,754,861	-			-1.0
4,754,862	+			+0.1
4,754,862	+			+0.2
4,754,862	+			-1.4
4,754,862	+			-1.4
4,754,862	+			-0.6
4,754,862	+			-0.7
4,754,862	+			+0.2
4,754,862	+			+0.1
4,754,862	+			-1.1
4,754,862	+			+0.1
4,754,862	+			-0.7
4,754,863	-			+1.5
4,754,863	-			+1.7
4,754,863	-			-0.7
4,754,863	-			+0.1
4,754,863	-			+1.4
4,754,863	-			-1.2
4,754,863	-			-0.1
4,754,863	-			-1.9
4,754,863	-			+1.2
4,754,863	-			-0.1
4,754,921	+			-1.4
4,754,921	+			+1.4
4,754,921	+			-1.2
4,754,921	+			-0.3
4,754,922	-			+0.7
4,754,922	-			+1.0
4,754,922	-			-0.7
4,754,922	-			-0.1
4,754,926	+			-1.0
4,754,926	+			+0.7
4,754,927	-			-1.2
4,754,927	-			+0.6
4,754,927	-			-0.6
4,755,146	+	DZA65_RS21990	0.31	+0.1
4,755,147	-	DZA65_RS21990	0.31	-1.9
4,755,147	-	DZA65_RS21990	0.31	-0.0
4,755,173	+	DZA65_RS21990	0.35	+0.9
4,755,173	+	DZA65_RS21990	0.35	+0.5
4,755,173	+	DZA65_RS21990	0.35	+1.1
4,755,173	+	DZA65_RS21990	0.35	+0.9
4,755,173	+	DZA65_RS21990	0.35	+2.1
4,755,174	-	DZA65_RS21990	0.35	+1.2
4,755,174	-	DZA65_RS21990	0.35	+0.7
4,755,174	-	DZA65_RS21990	0.35	-0.1
4,755,174	-	DZA65_RS21990	0.35	-0.3
4,755,330	+	DZA65_RS21990	0.54	+0.2
4,755,330	+	DZA65_RS21990	0.54	-0.4
4,755,330	+	DZA65_RS21990	0.54	+0.6
4,755,330	+	DZA65_RS21990	0.54	+0.4
4,755,331	-	DZA65_RS21990	0.54	+2.0
4,755,332	+	DZA65_RS21990	0.54	-1.2
4,755,332	+	DZA65_RS21990	0.54	-0.9
4,755,333	-	DZA65_RS21990	0.54	-0.7
4,755,343	-	DZA65_RS21990	0.56	-0.9
4,755,365	+	DZA65_RS21990	0.58	+2.0
4,755,365	+	DZA65_RS21990	0.58	+0.1
4,755,428	+	DZA65_RS21990	0.66	-0.0
4,755,428	+	DZA65_RS21990	0.66	-0.8
4,755,428	+	DZA65_RS21990	0.66	-3.1
4,755,428	+	DZA65_RS21990	0.66	-0.9
4,755,428	+	DZA65_RS21990	0.66	-0.8
4,755,428	+	DZA65_RS21990	0.66	+1.3
4,755,429	-	DZA65_RS21990	0.66	+0.7
4,755,429	-	DZA65_RS21990	0.66	+0.7
4,755,447	+	DZA65_RS21990	0.68	+0.8
4,755,448	-	DZA65_RS21990	0.68	+0.2
4,755,448	-	DZA65_RS21990	0.68	-1.8
4,755,448	-	DZA65_RS21990	0.68	+2.0
4,755,448	-	DZA65_RS21990	0.68	-2.6
4,755,448	-	DZA65_RS21990	0.68	+0.1
4,755,498	+	DZA65_RS21990	0.75	-0.0
4,755,513	-	DZA65_RS21990	0.76	-0.8
4,755,548	+	DZA65_RS21990	0.81	-0.6
4,755,593	+	DZA65_RS21990	0.86	-2.3
4,755,593	+	DZA65_RS21990	0.86	+0.4
4,755,593	+	DZA65_RS21990	0.86	+0.4
4,755,593	+	DZA65_RS21990	0.86	+0.3
4,755,593	+	DZA65_RS21990	0.86	+0.2
4,755,594	-	DZA65_RS21990	0.86	+0.2
4,755,594	-	DZA65_RS21990	0.86	+0.2
4,755,594	-	DZA65_RS21990	0.86	-1.5
4,755,594	-	DZA65_RS21990	0.86	+1.0
4,755,594	-	DZA65_RS21990	0.86	-0.0
4,755,678	+			-0.2
4,755,718	+			+0.9
4,755,727	+			+0.4
4,755,727	+			-0.4
4,755,727	+			-1.1
4,755,727	+			-0.3
4,755,727	+			-0.9
4,755,727	+			+0.7
4,755,727	+			-0.8
4,755,727	+			-0.9
4,755,728	-			+1.1
4,755,728	-			-0.6
4,755,728	-			-1.3
4,755,728	-			-1.9
4,755,728	-			-0.2
4,755,728	-			-1.8
4,755,728	-			-0.6
4,755,728	-			+2.1
4,755,728	-			-0.5
4,755,731	+			+0.1
4,755,732	-			-0.2
4,755,744	-			-1.9
4,755,796	+			+0.1
4,755,796	+			-0.3
4,755,797	-			-0.9
4,755,797	-			+1.1

Or see this region's nucleotide sequence