Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20740

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20735 and DZA65_RS20740 are separated by 1 nucleotidesDZA65_RS20740 and DZA65_RS20745 overlap by 8 nucleotidesDZA65_RS20745 and DZA65_RS20750 are separated by 134 nucleotides DZA65_RS20735: DZA65_RS20735 - tryptophan--tRNA ligase, at 4,474,680 to 4,475,684 _RS20735 DZA65_RS20740: DZA65_RS20740 - phosphoglycolate phosphatase, at 4,475,686 to 4,476,384 _RS20740 DZA65_RS20745: DZA65_RS20745 - ribulose-phosphate 3-epimerase, at 4,476,377 to 4,477,054 _RS20745 DZA65_RS20750: DZA65_RS20750 - adenine-specific DNA-methyltransferase, at 4,477,189 to 4,478,016 _RS20750 Position (kb) 4475 4476 4477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4475.732 kb on - strandat 4475.790 kb on - strand, within DZA65_RS20740at 4475.790 kb on - strand, within DZA65_RS20740at 4475.790 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.794 kb on - strand, within DZA65_RS20740at 4475.796 kb on - strand, within DZA65_RS20740at 4475.796 kb on - strand, within DZA65_RS20740at 4475.802 kb on - strand, within DZA65_RS20740at 4475.802 kb on - strand, within DZA65_RS20740at 4475.802 kb on - strand, within DZA65_RS20740at 4475.802 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.846 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.848 kb on - strand, within DZA65_RS20740at 4475.915 kb on + strandat 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.915 kb on + strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4475.916 kb on - strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.030 kb on + strand, within DZA65_RS20740at 4476.132 kb on - strand, within DZA65_RS20740at 4476.132 kb on - strand, within DZA65_RS20740at 4476.132 kb on - strand, within DZA65_RS20740at 4476.132 kb on - strand, within DZA65_RS20740at 4476.132 kb on - strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.134 kb on + strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.135 kb on - strand, within DZA65_RS20740at 4476.200 kb on - strand, within DZA65_RS20740at 4476.200 kb on - strand, within DZA65_RS20740at 4476.295 kb on - strand, within DZA65_RS20740at 4476.389 kb on + strandat 4476.389 kb on + strandat 4477.098 kb on + strandat 4477.099 kb on - strandat 4477.099 kb on - strandat 4477.105 kb on + strandat 4477.105 kb on + strandat 4477.146 kb on + strandat 4477.146 kb on + strandat 4477.146 kb on + strandat 4477.146 kb on + strandat 4477.146 kb on + strandat 4477.147 kb on - strandat 4477.147 kb on - strandat 4477.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,475,732 - -0.1
4,475,790 - DZA65_RS20740 0.15 -0.8
4,475,790 - DZA65_RS20740 0.15 -1.0
4,475,790 - DZA65_RS20740 0.15 +0.1
4,475,794 - DZA65_RS20740 0.15 +0.0
4,475,794 - DZA65_RS20740 0.15 +0.9
4,475,794 - DZA65_RS20740 0.15 +0.6
4,475,794 - DZA65_RS20740 0.15 -0.4
4,475,794 - DZA65_RS20740 0.15 +1.3
4,475,794 - DZA65_RS20740 0.15 +1.3
4,475,794 - DZA65_RS20740 0.15 +1.1
4,475,794 - DZA65_RS20740 0.15 -3.7
4,475,794 - DZA65_RS20740 0.15 -0.3
4,475,794 - DZA65_RS20740 0.15 -1.3
4,475,794 - DZA65_RS20740 0.15 -1.7
4,475,794 - DZA65_RS20740 0.15 +2.7
4,475,796 - DZA65_RS20740 0.16 -0.3
4,475,796 - DZA65_RS20740 0.16 +0.7
4,475,802 - DZA65_RS20740 0.17 -0.9
4,475,802 - DZA65_RS20740 0.17 +0.7
4,475,802 - DZA65_RS20740 0.17 -0.8
4,475,802 - DZA65_RS20740 0.17 +1.1
4,475,846 - DZA65_RS20740 0.23 +1.9
4,475,846 - DZA65_RS20740 0.23 +0.3
4,475,846 - DZA65_RS20740 0.23 +1.7
4,475,846 - DZA65_RS20740 0.23 +0.5
4,475,846 - DZA65_RS20740 0.23 -0.3
4,475,846 - DZA65_RS20740 0.23 +0.4
4,475,846 - DZA65_RS20740 0.23 +0.6
4,475,846 - DZA65_RS20740 0.23 +2.3
4,475,846 - DZA65_RS20740 0.23 -1.5
4,475,846 - DZA65_RS20740 0.23 +1.1
4,475,846 - DZA65_RS20740 0.23 +0.1
4,475,846 - DZA65_RS20740 0.23 -0.2
4,475,846 - DZA65_RS20740 0.23 +1.3
4,475,848 - DZA65_RS20740 0.23 +0.3
4,475,848 - DZA65_RS20740 0.23 -0.5
4,475,848 - DZA65_RS20740 0.23 -0.3
4,475,848 - DZA65_RS20740 0.23 -1.9
4,475,848 - DZA65_RS20740 0.23 -0.9
4,475,848 - DZA65_RS20740 0.23 -1.0
4,475,848 - DZA65_RS20740 0.23 +0.9
4,475,848 - DZA65_RS20740 0.23 -0.3
4,475,848 - DZA65_RS20740 0.23 -0.7
4,475,848 - DZA65_RS20740 0.23 -1.7
4,475,915 + +0.7
4,475,915 + DZA65_RS20740 0.33 +0.7
4,475,915 + DZA65_RS20740 0.33 -0.9
4,475,915 + DZA65_RS20740 0.33 -0.4
4,475,915 + DZA65_RS20740 0.33 +0.6
4,475,915 + DZA65_RS20740 0.33 +1.2
4,475,915 + DZA65_RS20740 0.33 -0.4
4,475,915 + DZA65_RS20740 0.33 +0.3
4,475,915 + DZA65_RS20740 0.33 +1.9
4,475,915 + DZA65_RS20740 0.33 +1.6
4,475,915 + DZA65_RS20740 0.33 -1.1
4,475,915 + DZA65_RS20740 0.33 -1.5
4,475,915 + DZA65_RS20740 0.33 +0.6
4,475,915 + DZA65_RS20740 0.33 +2.3
4,475,915 + DZA65_RS20740 0.33 -0.2
4,475,915 + DZA65_RS20740 0.33 -1.0
4,475,915 + DZA65_RS20740 0.33 -0.0
4,475,916 - DZA65_RS20740 0.33 +0.3
4,475,916 - DZA65_RS20740 0.33 +0.9
4,475,916 - DZA65_RS20740 0.33 -0.1
4,475,916 - DZA65_RS20740 0.33 +0.1
4,475,916 - DZA65_RS20740 0.33 +0.1
4,475,916 - DZA65_RS20740 0.33 +0.1
4,475,916 - DZA65_RS20740 0.33 +0.5
4,475,916 - DZA65_RS20740 0.33 -1.9
4,475,916 - DZA65_RS20740 0.33 -1.7
4,475,916 - DZA65_RS20740 0.33 -1.8
4,475,916 - DZA65_RS20740 0.33 +0.6
4,475,916 - DZA65_RS20740 0.33 -1.3
4,475,916 - DZA65_RS20740 0.33 -0.0
4,475,916 - DZA65_RS20740 0.33 -0.0
4,475,916 - DZA65_RS20740 0.33 -0.1
4,475,916 - DZA65_RS20740 0.33 -0.3
4,476,030 + DZA65_RS20740 0.49 -1.5
4,476,030 + DZA65_RS20740 0.49 -0.0
4,476,030 + DZA65_RS20740 0.49 +1.1
4,476,030 + DZA65_RS20740 0.49 -0.3
4,476,030 + DZA65_RS20740 0.49 -0.1
4,476,030 + DZA65_RS20740 0.49 +0.6
4,476,132 - DZA65_RS20740 0.64 +1.6
4,476,132 - DZA65_RS20740 0.64 -0.4
4,476,132 - DZA65_RS20740 0.64 -1.1
4,476,132 - DZA65_RS20740 0.64 +0.1
4,476,132 - DZA65_RS20740 0.64 -0.3
4,476,134 + DZA65_RS20740 0.64 +0.1
4,476,134 + DZA65_RS20740 0.64 -1.3
4,476,134 + DZA65_RS20740 0.64 -0.7
4,476,134 + DZA65_RS20740 0.64 +0.9
4,476,134 + DZA65_RS20740 0.64 +0.3
4,476,134 + DZA65_RS20740 0.64 +0.8
4,476,134 + DZA65_RS20740 0.64 -2.2
4,476,134 + DZA65_RS20740 0.64 -0.6
4,476,134 + DZA65_RS20740 0.64 -0.3
4,476,134 + DZA65_RS20740 0.64 +1.3
4,476,134 + DZA65_RS20740 0.64 +0.8
4,476,134 + DZA65_RS20740 0.64 +1.1
4,476,134 + DZA65_RS20740 0.64 +0.4
4,476,135 - DZA65_RS20740 0.64 +0.7
4,476,135 - DZA65_RS20740 0.64 -0.5
4,476,135 - DZA65_RS20740 0.64 +0.3
4,476,135 - DZA65_RS20740 0.64 +0.9
4,476,135 - DZA65_RS20740 0.64 +1.3
4,476,135 - DZA65_RS20740 0.64 -1.0
4,476,135 - DZA65_RS20740 0.64 +0.7
4,476,135 - DZA65_RS20740 0.64 +0.3
4,476,135 - DZA65_RS20740 0.64 -0.9
4,476,135 - DZA65_RS20740 0.64 -2.4
4,476,135 - DZA65_RS20740 0.64 +2.8
4,476,135 - DZA65_RS20740 0.64 -0.5
4,476,135 - DZA65_RS20740 0.64 -0.2
4,476,200 - DZA65_RS20740 0.74 -0.3
4,476,200 - DZA65_RS20740 0.74 -0.3
4,476,295 - DZA65_RS20740 0.87 +2.0
4,476,389 + +0.5
4,476,389 + -0.9
4,477,098 + +0.6
4,477,099 - -0.3
4,477,099 - +0.1
4,477,105 + +0.9
4,477,105 + +1.5
4,477,146 + -0.4
4,477,146 + +0.3
4,477,146 + -1.7
4,477,146 + +1.6
4,477,146 + -2.0
4,477,147 - +0.6
4,477,147 - +0.5
4,477,147 - +2.0

Or see this region's nucleotide sequence