Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19540 and DZA65_RS19545 are separated by 303 nucleotides DZA65_RS19545 and DZA65_RS19550 are separated by 195 nucleotides
DZA65_RS19540: DZA65_RS19540 - phosphoglycerate dehydrogenase, at 4,231,028 to 4,232,260
_RS19540
DZA65_RS19545: DZA65_RS19545 - ribose-5-phosphate isomerase RpiA, at 4,232,564 to 4,233,226
_RS19545
DZA65_RS19550: DZA65_RS19550 - LysR family transcriptional regulator ArgP, at 4,233,422 to 4,234,315
_RS19550
Position (kb) 4232
4233
4234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.662 kb on - strand, within DZA65_RS19540 at 4231.662 kb on - strand, within DZA65_RS19540 at 4231.718 kb on - strand, within DZA65_RS19540 at 4231.722 kb on + strand, within DZA65_RS19540 at 4231.723 kb on - strand, within DZA65_RS19540 at 4231.728 kb on + strand, within DZA65_RS19540 at 4231.728 kb on + strand, within DZA65_RS19540 at 4231.729 kb on - strand, within DZA65_RS19540 at 4231.729 kb on - strand at 4231.729 kb on - strand, within DZA65_RS19540 at 4231.793 kb on - strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4232.006 kb on - strand, within DZA65_RS19540 at 4232.146 kb on + strand at 4232.147 kb on - strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.152 kb on - strand at 4232.166 kb on + strand at 4232.204 kb on + strand at 4232.228 kb on - strand at 4232.228 kb on - strand at 4232.228 kb on - strand at 4232.250 kb on - strand at 4232.250 kb on - strand at 4232.271 kb on + strand at 4232.272 kb on - strand at 4232.288 kb on + strand at 4232.288 kb on + strand at 4232.288 kb on + strand at 4232.289 kb on - strand at 4232.289 kb on - strand at 4232.290 kb on + strand at 4232.290 kb on + strand at 4232.290 kb on + strand at 4232.291 kb on - strand at 4232.291 kb on - strand at 4232.320 kb on + strand at 4232.345 kb on - strand at 4232.407 kb on - strand at 4232.416 kb on + strand at 4232.417 kb on - strand at 4232.461 kb on + strand at 4232.461 kb on + strand at 4232.464 kb on + strand at 4232.464 kb on + strand at 4232.464 kb on + strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4233.243 kb on + strand at 4233.244 kb on - strand at 4233.244 kb on - strand at 4233.248 kb on - strand at 4233.264 kb on - strand at 4233.264 kb on - strand at 4233.264 kb on - strand at 4233.264 kb on - strand at 4233.264 kb on - strand at 4233.264 kb on - strand at 4233.267 kb on - strand at 4233.267 kb on - strand at 4233.267 kb on - strand at 4233.268 kb on + strand at 4233.268 kb on + strand at 4233.268 kb on + strand at 4233.269 kb on - strand at 4233.317 kb on + strand at 4233.317 kb on + strand at 4233.318 kb on - strand at 4233.318 kb on - strand at 4233.318 kb on - strand at 4233.340 kb on + strand at 4233.340 kb on + strand at 4233.340 kb on + strand at 4233.341 kb on - strand at 4233.341 kb on - strand at 4233.341 kb on - strand at 4233.341 kb on - strand at 4233.341 kb on - strand at 4233.341 kb on - strand at 4233.381 kb on + strand at 4233.508 kb on + strand at 4233.509 kb on - strand at 4233.509 kb on - strand at 4233.509 kb on - strand at 4233.509 kb on - strand at 4233.511 kb on + strand at 4233.511 kb on + strand at 4233.511 kb on + strand at 4233.512 kb on - strand, within DZA65_RS19550 at 4233.512 kb on - strand at 4233.512 kb on - strand, within DZA65_RS19550 at 4233.512 kb on - strand, within DZA65_RS19550 at 4233.535 kb on + strand, within DZA65_RS19550 at 4233.536 kb on - strand, within DZA65_RS19550 at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.630 kb on + strand at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.630 kb on + strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.631 kb on - strand, within DZA65_RS19550 at 4233.856 kb on + strand, within DZA65_RS19550 at 4233.857 kb on - strand, within DZA65_RS19550 at 4233.893 kb on - strand, within DZA65_RS19550 at 4233.911 kb on + strand, within DZA65_RS19550 at 4233.911 kb on + strand, within DZA65_RS19550 at 4233.911 kb on + strand, within DZA65_RS19550 at 4233.912 kb on - strand, within DZA65_RS19550 at 4233.947 kb on + strand, within DZA65_RS19550 at 4233.947 kb on + strand, within DZA65_RS19550 at 4233.948 kb on - strand, within DZA65_RS19550 at 4234.068 kb on + strand, within DZA65_RS19550 at 4234.084 kb on + strand, within DZA65_RS19550 at 4234.085 kb on - strand, within DZA65_RS19550 at 4234.085 kb on - strand, within DZA65_RS19550 at 4234.104 kb on + strand, within DZA65_RS19550 at 4234.104 kb on + strand, within DZA65_RS19550 at 4234.104 kb on + strand, within DZA65_RS19550 at 4234.105 kb on - strand, within DZA65_RS19550 at 4234.105 kb on - strand, within DZA65_RS19550 at 4234.105 kb on - strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.135 kb on + strand at 4234.135 kb on + strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.136 kb on - strand, within DZA65_RS19550 at 4234.223 kb on + strand, within DZA65_RS19550 at 4234.223 kb on + strand, within DZA65_RS19550 at 4234.223 kb on + strand, within DZA65_RS19550 at 4234.224 kb on - strand, within DZA65_RS19550 at 4234.224 kb on - strand, within DZA65_RS19550 at 4234.224 kb on - strand, within DZA65_RS19550
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,231,661 + DZA65_RS19540 0.51 -1.4 4,231,661 + DZA65_RS19540 0.51 -2.9 4,231,661 + DZA65_RS19540 0.51 -1.4 4,231,662 - DZA65_RS19540 0.51 -4.1 4,231,662 - DZA65_RS19540 0.51 -1.6 4,231,718 - DZA65_RS19540 0.56 -2.1 4,231,722 + DZA65_RS19540 0.56 -0.8 4,231,723 - DZA65_RS19540 0.56 -2.0 4,231,728 + DZA65_RS19540 0.57 -0.8 4,231,728 + DZA65_RS19540 0.57 -1.6 4,231,729 - DZA65_RS19540 0.57 -3.3 4,231,729 - -0.4 4,231,729 - DZA65_RS19540 0.57 -1.1 4,231,793 - DZA65_RS19540 0.62 -0.1 4,231,849 + DZA65_RS19540 0.67 -2.9 4,231,849 + DZA65_RS19540 0.67 +0.2 4,231,849 + DZA65_RS19540 0.67 -2.6 4,232,006 - DZA65_RS19540 0.79 -1.4 4,232,146 + -1.1 4,232,147 - -4.6 4,232,151 + -2.0 4,232,151 + -0.4 4,232,151 + -1.8 4,232,151 + -3.0 4,232,152 - -1.2 4,232,166 + -0.5 4,232,204 + -2.5 4,232,228 - -2.7 4,232,228 - -0.3 4,232,228 - -2.1 4,232,250 - -1.4 4,232,250 - -2.6 4,232,271 + -3.8 4,232,272 - -1.0 4,232,288 + -4.4 4,232,288 + -0.6 4,232,288 + -1.0 4,232,289 - -0.1 4,232,289 - -0.8 4,232,290 + -0.0 4,232,290 + -1.9 4,232,290 + -2.9 4,232,291 - -0.1 4,232,291 - +1.2 4,232,320 + -0.0 4,232,345 - -0.3 4,232,407 - -1.8 4,232,416 + +0.2 4,232,417 - -0.1 4,232,461 + -1.3 4,232,461 + -0.7 4,232,464 + +0.5 4,232,464 + +1.2 4,232,464 + +0.6 4,232,465 - -0.5 4,232,465 - -0.5 4,232,465 - +0.0 4,232,465 - +0.2 4,233,243 + -1.6 4,233,244 - -0.2 4,233,244 - -1.1 4,233,248 - -0.4 4,233,264 - +0.0 4,233,264 - -0.1 4,233,264 - +0.7 4,233,264 - +0.1 4,233,264 - -0.5 4,233,264 - -2.1 4,233,267 - +0.8 4,233,267 - +0.2 4,233,267 - +0.6 4,233,268 + -0.8 4,233,268 + +1.2 4,233,268 + +0.1 4,233,269 - -1.2 4,233,317 + +2.8 4,233,317 + -0.1 4,233,318 - +0.8 4,233,318 - +0.6 4,233,318 - +0.4 4,233,340 + -0.0 4,233,340 + +0.3 4,233,340 + +0.9 4,233,341 - +0.3 4,233,341 - -0.1 4,233,341 - +0.4 4,233,341 - -0.2 4,233,341 - +2.1 4,233,341 - -0.6 4,233,381 + +0.8 4,233,508 + -0.1 4,233,509 - +0.5 4,233,509 - +0.8 4,233,509 - +0.2 4,233,509 - +0.5 4,233,511 + +0.4 4,233,511 + -0.3 4,233,511 + -0.4 4,233,512 - DZA65_RS19550 0.10 +0.0 4,233,512 - +1.2 4,233,512 - DZA65_RS19550 0.10 -0.8 4,233,512 - DZA65_RS19550 0.10 +0.8 4,233,535 + DZA65_RS19550 0.13 -0.8 4,233,536 - DZA65_RS19550 0.13 +0.9 4,233,630 + DZA65_RS19550 0.23 -1.6 4,233,630 + DZA65_RS19550 0.23 +0.2 4,233,630 + +1.8 4,233,630 + DZA65_RS19550 0.23 -0.1 4,233,630 + DZA65_RS19550 0.23 -0.7 4,233,630 + DZA65_RS19550 0.23 -0.1 4,233,630 + DZA65_RS19550 0.23 +0.5 4,233,631 - DZA65_RS19550 0.23 +0.7 4,233,631 - DZA65_RS19550 0.23 -0.2 4,233,631 - DZA65_RS19550 0.23 -1.9 4,233,631 - DZA65_RS19550 0.23 +0.2 4,233,631 - DZA65_RS19550 0.23 +0.2 4,233,631 - DZA65_RS19550 0.23 -0.3 4,233,856 + DZA65_RS19550 0.49 +2.4 4,233,857 - DZA65_RS19550 0.49 -0.2 4,233,893 - DZA65_RS19550 0.53 -0.2 4,233,911 + DZA65_RS19550 0.55 -1.4 4,233,911 + DZA65_RS19550 0.55 -0.8 4,233,911 + DZA65_RS19550 0.55 -0.5 4,233,912 - DZA65_RS19550 0.55 -1.1 4,233,947 + DZA65_RS19550 0.59 -0.9 4,233,947 + DZA65_RS19550 0.59 -2.4 4,233,948 - DZA65_RS19550 0.59 -0.1 4,234,068 + DZA65_RS19550 0.72 +0.5 4,234,084 + DZA65_RS19550 0.74 -0.1 4,234,085 - DZA65_RS19550 0.74 -2.0 4,234,085 - DZA65_RS19550 0.74 -0.4 4,234,104 + DZA65_RS19550 0.76 -1.8 4,234,104 + DZA65_RS19550 0.76 -0.7 4,234,104 + DZA65_RS19550 0.76 +0.4 4,234,105 - DZA65_RS19550 0.76 -0.1 4,234,105 - DZA65_RS19550 0.76 +0.8 4,234,105 - DZA65_RS19550 0.76 +1.5 4,234,135 + DZA65_RS19550 0.80 +0.2 4,234,135 + DZA65_RS19550 0.80 -2.7 4,234,135 + DZA65_RS19550 0.80 -0.6 4,234,135 + DZA65_RS19550 0.80 +1.2 4,234,135 + DZA65_RS19550 0.80 +0.2 4,234,135 + DZA65_RS19550 0.80 +0.8 4,234,135 + DZA65_RS19550 0.80 -0.6 4,234,135 + DZA65_RS19550 0.80 -0.1 4,234,135 + +2.5 4,234,135 + DZA65_RS19550 0.80 -0.8 4,234,136 - DZA65_RS19550 0.80 -0.4 4,234,136 - DZA65_RS19550 0.80 -1.2 4,234,136 - DZA65_RS19550 0.80 +0.3 4,234,136 - DZA65_RS19550 0.80 -2.6 4,234,136 - DZA65_RS19550 0.80 +0.8 4,234,136 - DZA65_RS19550 0.80 -1.4 4,234,136 - DZA65_RS19550 0.80 -0.3 4,234,136 - DZA65_RS19550 0.80 -1.2 4,234,136 - DZA65_RS19550 0.80 -1.6 4,234,223 + DZA65_RS19550 0.90 +0.2 4,234,223 + DZA65_RS19550 0.90 -3.2 4,234,223 + DZA65_RS19550 0.90 -0.1 4,234,224 - DZA65_RS19550 0.90 -1.7 4,234,224 - DZA65_RS19550 0.90 -0.4 4,234,224 - DZA65_RS19550 0.90 +0.3
Or see this region's nucleotide sequence