Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19335 and DZA65_RS19340 overlap by 8 nucleotides DZA65_RS19340 and DZA65_RS19345 are separated by 15 nucleotides DZA65_RS19345 and DZA65_RS19350 are separated by 6 nucleotides
DZA65_RS19335: DZA65_RS19335 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,182,863 to 4,183,864
_RS19335
DZA65_RS19340: DZA65_RS19340 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,183,857 to 4,184,675
_RS19340
DZA65_RS19345: DZA65_RS19345 - Co2+/Mg2+ efflux protein ApaG, at 4,184,691 to 4,185,068
_RS19345
DZA65_RS19350: DZA65_RS19350 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 4,185,075 to 4,185,917
_RS19350
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4184.673 kb on + strand at 4184.673 kb on + strand at 4184.674 kb on - strand at 4184.716 kb on + strand at 4184.716 kb on + strand at 4184.717 kb on - strand at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.733 kb on + strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.734 kb on - strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.737 kb on + strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.738 kb on - strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.781 kb on + strand, within DZA65_RS19345 at 4184.782 kb on - strand, within DZA65_RS19345 at 4184.782 kb on - strand, within DZA65_RS19345 at 4184.782 kb on - strand, within DZA65_RS19345 at 4184.782 kb on - strand, within DZA65_RS19345 at 4184.782 kb on - strand, within DZA65_RS19345 at 4184.783 kb on + strand, within DZA65_RS19345 at 4184.784 kb on - strand, within DZA65_RS19345 at 4184.784 kb on - strand, within DZA65_RS19345 at 4184.784 kb on - strand, within DZA65_RS19345 at 4184.784 kb on - strand, within DZA65_RS19345 at 4184.784 kb on - strand, within DZA65_RS19345 at 4184.842 kb on + strand, within DZA65_RS19345 at 4184.843 kb on - strand, within DZA65_RS19345 at 4184.843 kb on - strand, within DZA65_RS19345 at 4184.843 kb on - strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.846 kb on + strand, within DZA65_RS19345 at 4184.847 kb on - strand, within DZA65_RS19345 at 4184.847 kb on - strand, within DZA65_RS19345 at 4184.847 kb on - strand, within DZA65_RS19345 at 4184.934 kb on + strand, within DZA65_RS19345 at 4184.935 kb on - strand, within DZA65_RS19345 at 4184.935 kb on - strand, within DZA65_RS19345 at 4184.935 kb on - strand, within DZA65_RS19345 at 4184.935 kb on - strand, within DZA65_RS19345 at 4185.061 kb on + strand at 4185.061 kb on + strand at 4185.061 kb on + strand at 4185.061 kb on + strand at 4185.061 kb on + strand at 4185.062 kb on - strand at 4185.062 kb on - strand at 4185.062 kb on - strand at 4185.062 kb on - strand at 4185.075 kb on - strand at 4185.080 kb on + strand at 4185.080 kb on + strand at 4185.080 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.084 kb on + strand at 4185.085 kb on - strand at 4185.085 kb on - strand at 4185.085 kb on - strand at 4185.225 kb on + strand, within DZA65_RS19350 at 4185.225 kb on + strand, within DZA65_RS19350 at 4185.226 kb on - strand, within DZA65_RS19350 at 4185.226 kb on - strand, within DZA65_RS19350 at 4185.226 kb on - strand, within DZA65_RS19350 at 4185.226 kb on - strand, within DZA65_RS19350 at 4185.295 kb on - strand, within DZA65_RS19350 at 4185.513 kb on - strand, within DZA65_RS19350 at 4185.540 kb on + strand, within DZA65_RS19350 at 4185.540 kb on + strand, within DZA65_RS19350 at 4185.611 kb on - strand at 4185.611 kb on - strand at 4185.628 kb on - strand, within DZA65_RS19350 at 4185.774 kb on - strand, within DZA65_RS19350 at 4185.796 kb on - strand, within DZA65_RS19350 at 4185.796 kb on - strand, within DZA65_RS19350 at 4185.861 kb on + strand at 4185.861 kb on + strand at 4185.861 kb on + strand at 4185.861 kb on + strand at 4185.862 kb on - strand at 4185.862 kb on - strand at 4185.975 kb on + strand at 4185.976 kb on - strand at 4185.976 kb on - strand at 4185.983 kb on + strand at 4185.983 kb on + strand at 4185.984 kb on - strand at 4186.017 kb on + strand at 4186.017 kb on + strand at 4186.018 kb on - strand at 4186.020 kb on + strand at 4186.021 kb on - strand at 4186.021 kb on - strand at 4186.027 kb on + strand at 4186.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,184,673 + -0.3 4,184,673 + +0.5 4,184,674 - +0.9 4,184,716 + +0.5 4,184,716 + -0.8 4,184,717 - -1.8 4,184,733 + DZA65_RS19345 0.11 +0.9 4,184,733 + DZA65_RS19345 0.11 -0.2 4,184,733 + DZA65_RS19345 0.11 -0.9 4,184,733 + DZA65_RS19345 0.11 -0.2 4,184,733 + DZA65_RS19345 0.11 -0.8 4,184,733 + DZA65_RS19345 0.11 -1.6 4,184,733 + DZA65_RS19345 0.11 -1.0 4,184,733 + DZA65_RS19345 0.11 +1.1 4,184,733 + DZA65_RS19345 0.11 -0.6 4,184,733 + DZA65_RS19345 0.11 +0.2 4,184,733 + DZA65_RS19345 0.11 -2.1 4,184,733 + DZA65_RS19345 0.11 -0.8 4,184,733 + DZA65_RS19345 0.11 -1.1 4,184,733 + DZA65_RS19345 0.11 -1.4 4,184,733 + DZA65_RS19345 0.11 -1.0 4,184,733 + DZA65_RS19345 0.11 +0.5 4,184,733 + DZA65_RS19345 0.11 +2.6 4,184,733 + DZA65_RS19345 0.11 +1.1 4,184,734 - DZA65_RS19345 0.11 -1.1 4,184,734 - DZA65_RS19345 0.11 -0.1 4,184,734 - DZA65_RS19345 0.11 -0.4 4,184,734 - DZA65_RS19345 0.11 -2.1 4,184,734 - DZA65_RS19345 0.11 -0.6 4,184,734 - DZA65_RS19345 0.11 -2.5 4,184,734 - DZA65_RS19345 0.11 -0.0 4,184,734 - DZA65_RS19345 0.11 -2.1 4,184,734 - DZA65_RS19345 0.11 -2.0 4,184,734 - DZA65_RS19345 0.11 +0.2 4,184,734 - DZA65_RS19345 0.11 -1.6 4,184,734 - DZA65_RS19345 0.11 -1.2 4,184,737 + DZA65_RS19345 0.12 +0.8 4,184,737 + DZA65_RS19345 0.12 -2.1 4,184,737 + DZA65_RS19345 0.12 -1.4 4,184,737 + DZA65_RS19345 0.12 -2.1 4,184,737 + DZA65_RS19345 0.12 -0.5 4,184,737 + DZA65_RS19345 0.12 -0.7 4,184,737 + DZA65_RS19345 0.12 -1.2 4,184,737 + DZA65_RS19345 0.12 +0.1 4,184,737 + DZA65_RS19345 0.12 -0.8 4,184,738 - DZA65_RS19345 0.12 -2.4 4,184,738 - DZA65_RS19345 0.12 -2.7 4,184,738 - DZA65_RS19345 0.12 -1.0 4,184,738 - DZA65_RS19345 0.12 +0.9 4,184,738 - DZA65_RS19345 0.12 -2.7 4,184,738 - DZA65_RS19345 0.12 -1.3 4,184,781 + DZA65_RS19345 0.24 -1.4 4,184,781 + DZA65_RS19345 0.24 +0.2 4,184,781 + DZA65_RS19345 0.24 +0.4 4,184,781 + DZA65_RS19345 0.24 +0.7 4,184,781 + DZA65_RS19345 0.24 -2.6 4,184,781 + DZA65_RS19345 0.24 -1.4 4,184,781 + DZA65_RS19345 0.24 -0.1 4,184,781 + DZA65_RS19345 0.24 +0.4 4,184,782 - DZA65_RS19345 0.24 -2.1 4,184,782 - DZA65_RS19345 0.24 +0.2 4,184,782 - DZA65_RS19345 0.24 -0.4 4,184,782 - DZA65_RS19345 0.24 -4.1 4,184,782 - DZA65_RS19345 0.24 -1.8 4,184,783 + DZA65_RS19345 0.24 +1.4 4,184,784 - DZA65_RS19345 0.25 -0.8 4,184,784 - DZA65_RS19345 0.25 -0.8 4,184,784 - DZA65_RS19345 0.25 -3.6 4,184,784 - DZA65_RS19345 0.25 +0.0 4,184,784 - DZA65_RS19345 0.25 -1.4 4,184,842 + DZA65_RS19345 0.40 +0.1 4,184,843 - DZA65_RS19345 0.40 -0.2 4,184,843 - DZA65_RS19345 0.40 -1.1 4,184,843 - DZA65_RS19345 0.40 -1.4 4,184,846 + DZA65_RS19345 0.41 +0.5 4,184,846 + DZA65_RS19345 0.41 +1.0 4,184,846 + DZA65_RS19345 0.41 +1.0 4,184,846 + DZA65_RS19345 0.41 +0.2 4,184,846 + DZA65_RS19345 0.41 -0.4 4,184,846 + DZA65_RS19345 0.41 -0.6 4,184,847 - DZA65_RS19345 0.41 -2.0 4,184,847 - DZA65_RS19345 0.41 +0.4 4,184,847 - DZA65_RS19345 0.41 -1.7 4,184,934 + DZA65_RS19345 0.64 -2.2 4,184,935 - DZA65_RS19345 0.65 -1.0 4,184,935 - DZA65_RS19345 0.65 -0.3 4,184,935 - DZA65_RS19345 0.65 -3.0 4,184,935 - DZA65_RS19345 0.65 -1.6 4,185,061 + +0.8 4,185,061 + -1.3 4,185,061 + -0.4 4,185,061 + +1.2 4,185,061 + +0.4 4,185,062 - -1.4 4,185,062 - +0.2 4,185,062 - -0.1 4,185,062 - -1.1 4,185,075 - -2.5 4,185,080 + -1.7 4,185,080 + -2.1 4,185,080 + -1.4 4,185,084 + -2.6 4,185,084 + -1.1 4,185,084 + -2.0 4,185,084 + -3.3 4,185,084 + +1.1 4,185,084 + -2.5 4,185,084 + -0.8 4,185,084 + -3.8 4,185,085 - -1.8 4,185,085 - -0.8 4,185,085 - +1.9 4,185,225 + DZA65_RS19350 0.18 -1.4 4,185,225 + DZA65_RS19350 0.18 -2.9 4,185,226 - DZA65_RS19350 0.18 -2.4 4,185,226 - DZA65_RS19350 0.18 -0.1 4,185,226 - DZA65_RS19350 0.18 -0.4 4,185,226 - DZA65_RS19350 0.18 -0.4 4,185,295 - DZA65_RS19350 0.26 -3.3 4,185,513 - DZA65_RS19350 0.52 -2.9 4,185,540 + DZA65_RS19350 0.55 -0.8 4,185,540 + DZA65_RS19350 0.55 -2.0 4,185,611 - -0.8 4,185,611 - -0.4 4,185,628 - DZA65_RS19350 0.66 -1.5 4,185,774 - DZA65_RS19350 0.83 -2.3 4,185,796 - DZA65_RS19350 0.86 -3.8 4,185,796 - DZA65_RS19350 0.86 -0.7 4,185,861 + -1.0 4,185,861 + -2.5 4,185,861 + -0.3 4,185,861 + -1.9 4,185,862 - -0.2 4,185,862 - -2.1 4,185,975 + +0.3 4,185,976 - +1.2 4,185,976 - -0.1 4,185,983 + +0.9 4,185,983 + +0.1 4,185,984 - +0.0 4,186,017 + +0.9 4,186,017 + -0.8 4,186,018 - -0.0 4,186,020 + +0.5 4,186,021 - -0.6 4,186,021 - -0.4 4,186,027 + +0.2 4,186,028 - -0.1
Or see this region's nucleotide sequence