Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18275

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
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3,939,845	+			-1.7
3,939,845	+			+0.1
3,939,845	+			-0.6
3,939,845	+			-1.6
3,939,848	+			-1.2
3,939,867	+			+0.2
3,939,867	+			-1.6
3,939,868	-			+1.8
3,939,897	+			-0.4
3,940,118	-	DZA65_RS18270	0.34	+0.7
3,940,142	-	DZA65_RS18270	0.38	+0.1
3,940,179	+	DZA65_RS18270	0.44	+1.1
3,940,179	+	DZA65_RS18270	0.44	-1.5
3,940,179	+	DZA65_RS18270	0.44	+0.1
3,940,179	+	DZA65_RS18270	0.44	-0.9
3,940,184	-	DZA65_RS18270	0.45	-0.5
3,940,213	-	DZA65_RS18270	0.49	-1.2
3,940,249	-	DZA65_RS18270	0.55	-0.5
3,940,312	+			+2.7
3,940,357	+	DZA65_RS18270	0.71	+0.6
3,940,357	+	DZA65_RS18270	0.71	-0.5
3,940,434	+	DZA65_RS18270	0.83	+1.4
3,940,435	-	DZA65_RS18270	0.84	+0.4
3,940,437	+			+0.5
3,940,438	-	DZA65_RS18270	0.84	+0.5
3,940,438	-	DZA65_RS18270	0.84	+2.4
3,940,438	-	DZA65_RS18270	0.84	+1.1
3,940,732	+			-0.3
3,940,733	-			+0.8
3,940,786	+	DZA65_RS18275	0.11	+0.7
3,940,786	+	DZA65_RS18275	0.11	-2.1
3,940,786	+	DZA65_RS18275	0.11	-0.1
3,940,787	-	DZA65_RS18275	0.11	+0.8
3,940,787	-	DZA65_RS18275	0.11	+1.1
3,940,787	-	DZA65_RS18275	0.11	-0.2
3,940,787	-	DZA65_RS18275	0.11	+0.7
3,940,992	+	DZA65_RS18275	0.24	+0.6
3,940,993	-	DZA65_RS18275	0.24	-1.1
3,941,076	+	DZA65_RS18275	0.29	-0.2
3,941,076	+	DZA65_RS18275	0.29	-0.6
3,941,115	+	DZA65_RS18275	0.31	-0.5
3,941,157	+	DZA65_RS18275	0.34	-0.1
3,941,225	+	DZA65_RS18275	0.38	-1.0
3,941,225	+	DZA65_RS18275	0.38	-1.0
3,941,225	+	DZA65_RS18275	0.38	+0.6
3,941,225	+	DZA65_RS18275	0.38	+0.9
3,941,226	-	DZA65_RS18275	0.38	+0.1
3,941,226	-	DZA65_RS18275	0.38	+0.0
3,941,226	-	DZA65_RS18275	0.38	-1.0
3,941,226	-	DZA65_RS18275	0.38	+0.4
3,941,226	-	DZA65_RS18275	0.38	-2.1
3,941,323	-	DZA65_RS18275	0.44	-0.5
3,941,484	+	DZA65_RS18275	0.55	+0.3
3,941,485	-	DZA65_RS18275	0.55	-0.1
3,941,527	+	DZA65_RS18275	0.57	+1.3
3,941,594	-	DZA65_RS18275	0.61	-0.1
3,941,613	+	DZA65_RS18275	0.63	+0.8
3,941,634	+	DZA65_RS18275	0.64	-0.5
3,941,635	-	DZA65_RS18275	0.64	+1.1
3,941,635	-	DZA65_RS18275	0.64	+0.7
3,941,635	-	DZA65_RS18275	0.64	-0.2
3,941,636	+	DZA65_RS18275	0.64	-0.9
3,941,636	+	DZA65_RS18275	0.64	-0.6
3,941,759	+	DZA65_RS18275	0.72	-0.2
3,941,759	+	DZA65_RS18275	0.72	+1.6
3,941,759	+	DZA65_RS18275	0.72	-0.7
3,941,759	+	DZA65_RS18275	0.72	+0.4
3,941,760	-	DZA65_RS18275	0.72	+0.5
3,941,762	+	DZA65_RS18275	0.72	+2.3
3,941,762	+	DZA65_RS18275	0.72	-0.9
3,941,762	+	DZA65_RS18275	0.72	-0.2
3,941,762	+	DZA65_RS18275	0.72	-1.3
3,941,763	-	DZA65_RS18275	0.72	-0.9
3,941,763	-	DZA65_RS18275	0.72	-0.1
3,941,763	-	DZA65_RS18275	0.72	+0.3
3,941,763	-	DZA65_RS18275	0.72	-0.6
3,941,763	-	DZA65_RS18275	0.72	+1.5
3,941,763	-	DZA65_RS18275	0.72	-2.6
3,941,785	+	DZA65_RS18275	0.74	-0.7
3,941,823	-	DZA65_RS18275	0.76	-2.9
3,941,831	+	DZA65_RS18275	0.76	-0.7
3,941,844	+	DZA65_RS18275	0.77	-0.1
3,941,844	+	DZA65_RS18275	0.77	-0.5
3,941,845	-	DZA65_RS18275	0.77	+1.1
3,941,845	-	DZA65_RS18275	0.77	+0.1
3,941,845	-	DZA65_RS18275	0.77	+0.4
3,941,845	-	DZA65_RS18275	0.77	-0.1
3,941,871	+	DZA65_RS18275	0.79	-0.6
3,941,871	+	DZA65_RS18275	0.79	+0.7
3,941,871	+	DZA65_RS18275	0.79	+1.3
3,941,872	-	DZA65_RS18275	0.79	+2.7
3,941,872	-	DZA65_RS18275	0.79	+0.9
3,941,872	-	DZA65_RS18275	0.79	+0.1
3,941,876	-	DZA65_RS18275	0.79	+0.2
3,941,885	+	DZA65_RS18275	0.80	-0.4
3,941,917	+	DZA65_RS18275	0.82	+0.1
3,941,927	+	DZA65_RS18275	0.82	+1.6
3,941,927	+	DZA65_RS18275	0.82	+0.1
3,941,927	+	DZA65_RS18275	0.82	-0.6
3,941,927	+	DZA65_RS18275	0.82	-0.3
3,941,928	-	DZA65_RS18275	0.83	-0.7
3,941,928	-	DZA65_RS18275	0.83	-1.7
3,941,928	-	DZA65_RS18275	0.83	+0.4
3,941,928	-	DZA65_RS18275	0.83	+0.3
3,941,981	+	DZA65_RS18275	0.86	+1.3
3,941,981	+	DZA65_RS18275	0.86	+0.5
3,941,982	-	DZA65_RS18275	0.86	-0.7
3,941,982	-	DZA65_RS18275	0.86	+0.5
3,941,982	-	DZA65_RS18275	0.86	+1.1
3,942,024	+	DZA65_RS18275	0.89	+0.3
3,942,024	+	DZA65_RS18275	0.89	+1.6
3,942,024	+	DZA65_RS18275	0.89	-1.8
3,942,030	+	DZA65_RS18275	0.89	+1.1
3,942,030	+	DZA65_RS18275	0.89	+0.4
3,942,031	-	DZA65_RS18275	0.89	-0.1
3,942,031	-	DZA65_RS18275	0.89	-0.6
3,942,032	+	DZA65_RS18275	0.89	+0.4
3,942,032	+	DZA65_RS18275	0.89	-0.1
3,942,032	+	DZA65_RS18275	0.89	+0.4
3,942,032	+	DZA65_RS18275	0.89	+0.4
3,942,033	-	DZA65_RS18275	0.89	+0.5
3,942,033	-	DZA65_RS18275	0.89	+0.8
3,942,033	-	DZA65_RS18275	0.89	+1.1
3,942,033	-	DZA65_RS18275	0.89	+1.7
3,942,033	-	DZA65_RS18275	0.89	+0.9
3,942,033	-	DZA65_RS18275	0.89	-0.1
3,942,033	-	DZA65_RS18275	0.89	-2.2
3,942,077	-			-0.0
3,942,156	+			-0.1
3,942,189	+			-0.9
3,942,189	+			+0.4
3,942,189	+			+1.6
3,942,189	+			-0.0
3,942,248	-			-1.2
3,942,248	-			+1.4
3,942,251	+			-0.3
3,942,251	+			-1.5
3,942,251	+			-1.0
3,942,251	+			-0.1
3,942,251	+			-0.2
3,942,251	+			-1.0
3,942,251	+			-0.6
3,942,252	-			+1.6
3,942,252	-			-0.2
3,942,252	-			-2.1
3,942,252	-			-2.2
3,942,252	-			-0.5
3,942,252	-			-0.0
3,942,252	-			-1.7
3,942,356	-			+1.7
3,942,356	-			-1.7
3,942,364	+			-0.3
3,942,365	-			+1.4
3,942,368	+			+0.4
3,942,392	+			-0.3
3,942,393	-			+0.7
3,942,422	-			-1.6
3,942,422	-			-2.4
3,942,422	-			+0.4
3,942,472	+			+0.4
3,943,047	+			+0.5
3,943,047	+			+0.3
3,943,048	-			+0.1
3,943,048	-			+2.1
3,943,048	-			+0.1
3,943,048	-			+0.4
3,943,048	-			-0.9
3,943,048	-			-1.2
3,943,054	-			+0.3
3,943,054	-			+0.1
3,943,194	+	DZA65_RS18285	0.20	+0.5
3,943,195	-	DZA65_RS18285	0.20	+0.2
3,943,200	+	DZA65_RS18285	0.22	+0.2
3,943,200	+	DZA65_RS18285	0.22	-0.3
3,943,200	+	DZA65_RS18285	0.22	-0.9
3,943,200	+	DZA65_RS18285	0.22	+0.1

Or see this region's nucleotide sequence