Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15540

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,368,802	-		DZA65_RS15535	0.83	-0.2
3,368,802	-		DZA65_RS15535	0.83	-2.6
3,368,802	-		DZA65_RS15535	0.83	-0.3
3,368,807	+		DZA65_RS15535	0.83	+0.7
3,368,818	+		DZA65_RS15535	0.84	+0.7
3,368,819	-		DZA65_RS15535	0.84	+0.2
3,368,819	-		DZA65_RS15535	0.84	+0.3
3,368,819	-		DZA65_RS15535	0.84	-1.3
3,368,934	-				+0.2
3,368,968	+				+2.5
3,368,968	+				+0.4
3,368,969	-				-0.4
3,368,984	+				+1.9
3,368,984	+				-0.1
3,368,985	-				-0.7
3,369,037	+				-0.2
3,369,038	-				-0.0
3,369,038	-				-1.0
3,369,063	-				-0.8
3,369,095	+				+0.3
3,369,095	+				+0.0
3,369,096	-				+0.2
3,369,096	-				+0.4
3,369,096	-				-0.2
3,369,105	+				+0.9
3,369,105	+				-1.1
3,369,105	+				-0.6
3,369,105	+				+0.9
3,369,105	+				-1.1
3,369,106	-				+0.5
3,369,116	+				+0.2
3,369,116	+				+1.4
3,369,116	+				-0.3
3,369,116	+				-0.5
3,369,116	+				-0.7
3,369,116	+				-1.0
3,369,116	+				+0.9
3,369,116	+				-0.7
3,369,116	+				-1.9
3,369,116	+				-0.0
3,369,116	+				-0.3
3,369,117	-				+0.0
3,369,117	-				+0.6
3,369,117	-				-0.7
3,369,117	-				-1.1
3,369,117	-				-1.2
3,369,117	-				+0.3
3,369,117	-				+0.1
3,369,117	-				-1.1
3,369,117	-				-2.3
3,369,117	-				-1.7
3,369,117	-				-0.7
3,369,117	-				-0.5
3,369,138	+				-0.6
3,369,138	+				-0.9
3,369,139	-				-0.7
3,369,139	-				+0.9
3,369,139	-				+0.5
3,369,139	-				+0.2
3,369,139	-				+0.1
3,369,213	+				-0.5
3,369,213	+				+2.0
3,369,213	+				+0.5
3,369,213	+				-0.3
3,369,213	+				+0.4
3,369,213	+				-2.1
3,369,213	+				+0.4
3,369,213	+				-1.0
3,369,214	-				+0.9
3,369,214	-				-1.1
3,369,214	-				-0.2
3,369,214	-				-0.4
3,369,214	-				-0.4
3,369,233	+				+2.2
3,369,233	+				-1.1
3,369,233	+				-0.1
3,369,233	+				+0.1
3,369,233	+				-0.1
3,369,234	-				+0.7
3,369,234	-				-1.4
3,369,234	-				+1.1
3,369,246	-				-0.7
3,369,264	-				-0.4
3,369,304	-				+0.6
3,369,309	+				-1.8
3,369,323	+				-1.9
3,369,328	-				-0.3
3,369,360	-				-0.5
3,369,360	-				+0.4
3,369,376	+				-0.7
3,369,377	-				-0.1
3,369,382	-				+0.1
3,369,392	+				-1.1
3,369,394	+				-0.5
3,369,446	+				+0.8
3,369,450	-				+0.2
3,369,459	-				+0.5
3,369,591	+				-0.8
3,369,592	-				+0.1
3,369,612	+				+0.7
3,369,612	+				+0.5
3,369,613	-				-0.7
3,369,740	+		DZA65_RS15540	0.11	-0.9
3,369,741	-		DZA65_RS15540	0.11	-0.1
3,369,741	-		DZA65_RS15540	0.11	-0.7
3,369,796	-		DZA65_RS15540	0.17	-0.1
3,369,871	-		DZA65_RS15540	0.25	-2.6
3,369,871	-		DZA65_RS15540	0.25	-0.3
3,369,946	+		DZA65_RS15540	0.32	+0.7
3,369,946	+		DZA65_RS15540	0.32	-0.5
3,369,946	+		DZA65_RS15540	0.32	-1.7
3,369,946	+		DZA65_RS15540	0.32	-0.2
3,369,946	+		DZA65_RS15540	0.32	-1.7
3,369,946	+		DZA65_RS15540	0.32	-0.7
3,369,946	+		DZA65_RS15540	0.32	-0.5
3,369,947	-		DZA65_RS15540	0.32	-2.1
3,369,947	-		DZA65_RS15540	0.32	-2.0
3,369,947	-		DZA65_RS15540	0.32	-2.1
3,369,947	-		DZA65_RS15540	0.32	-0.7
3,369,947	-		DZA65_RS15540	0.32	-0.8
3,370,039	+		DZA65_RS15540	0.42	-0.7
3,370,039	+		DZA65_RS15540	0.42	-0.7
3,370,039	+		DZA65_RS15540	0.42	-1.3
3,370,039	+		DZA65_RS15540	0.42	-2.4
3,370,039	+		DZA65_RS15540	0.42	-1.4
3,370,039	+		DZA65_RS15540	0.42	-3.2
3,370,040	-		DZA65_RS15540	0.42	-1.1
3,370,040	-		DZA65_RS15540	0.42	-0.1
3,370,040	-		DZA65_RS15540	0.42	-0.7
3,370,040	-		DZA65_RS15540	0.42	-1.6
3,370,040	-		DZA65_RS15540	0.42	-2.9
3,370,040	-		DZA65_RS15540	0.42	-1.0
3,370,089	+		DZA65_RS15540	0.47	-1.3
3,370,089	+		DZA65_RS15540	0.47	-1.3
3,370,114	+		DZA65_RS15540	0.49	+0.5
3,370,237	+		DZA65_RS15540	0.62	-1.9
3,370,238	-		DZA65_RS15540	0.62	-0.6
3,370,238	-		DZA65_RS15540	0.62	-2.1
3,370,238	-		DZA65_RS15540	0.62	-2.0
3,370,238	-		DZA65_RS15540	0.62	+0.2
3,370,240	+		DZA65_RS15540	0.62	-0.7
3,370,241	-		DZA65_RS15540	0.62	-2.9
3,370,344	+		DZA65_RS15540	0.72	-0.1
3,370,374	+		DZA65_RS15540	0.75	-2.7
3,370,375	-		DZA65_RS15540	0.75	-1.1
3,370,375	-		DZA65_RS15540	0.75	-0.5
3,370,536	+				-2.6
3,370,552	+				-1.1
3,370,552	+				-2.3
3,370,552	+				-1.1
3,370,553	-				-1.4
3,370,553	-				-2.4
3,370,555	+				-1.2
3,370,555	+				-1.7
3,370,555	+				+0.4
3,370,555	+				-2.1
3,370,555	+				-2.9
3,370,556	-				-0.2
3,370,620	+				+0.8
3,370,621	-				+2.3
3,370,665	+				-0.8
3,370,665	+				-2.3
3,370,666	-				-0.9
3,370,666	-				-1.6
3,370,666	-				-1.0
3,370,787	+		DZA65_RS15545	0.11	-0.1
3,370,788	-		DZA65_RS15545	0.11	-0.5
3,370,788	-		DZA65_RS15545	0.11	-0.7
3,370,877	+		DZA65_RS15545	0.18	-1.3
3,370,877	+		DZA65_RS15545	0.18	-4.0
3,370,877	+		DZA65_RS15545	0.18	-1.7
3,370,877	+		DZA65_RS15545	0.18	-0.1
3,370,877	+		DZA65_RS15545	0.18	-1.9
3,370,877	+		DZA65_RS15545	0.18	-1.1
3,370,878	-		DZA65_RS15545	0.18	-0.9
3,370,878	-		DZA65_RS15545	0.18	-1.4
3,370,878	-		DZA65_RS15545	0.18	-1.9
3,370,878	-		DZA65_RS15545	0.18	-0.1
3,370,878	-		DZA65_RS15545	0.18	-1.1
3,370,878	-		DZA65_RS15545	0.18	-1.9
3,370,957	+		DZA65_RS15545	0.24	-0.1
3,370,957	+		DZA65_RS15545	0.24	-1.9
3,370,957	+		DZA65_RS15545	0.24	-1.0
3,370,957	+		DZA65_RS15545	0.24	-0.1
3,370,958	-		DZA65_RS15545	0.24	+0.2
3,370,963	+		DZA65_RS15545	0.24	-1.1
3,371,134	+		DZA65_RS15545	0.38	-2.8
3,371,134	+		DZA65_RS15545	0.38	-0.1
3,371,134	+		DZA65_RS15545	0.38	+0.2
3,371,134	+		DZA65_RS15545	0.38	-2.4
3,371,134	+		DZA65_RS15545	0.38	-1.4
3,371,135	-		DZA65_RS15545	0.38	+0.1
3,371,135	-				-0.1
3,371,135	-		DZA65_RS15545	0.38	-1.4
3,371,135	-		DZA65_RS15545	0.38	-1.7
3,371,168	-		DZA65_RS15545	0.40	-1.4
3,371,420	+		DZA65_RS15545	0.60	-1.7
3,371,420	+		DZA65_RS15545	0.60	-1.1
3,371,420	+		DZA65_RS15545	0.60	-0.6
3,371,420	+		DZA65_RS15545	0.60	-1.3
3,371,420	+		DZA65_RS15545	0.60	-2.1
3,371,420	+		DZA65_RS15545	0.60	-1.8
3,371,420	+		DZA65_RS15545	0.60	-2.1
3,371,421	-		DZA65_RS15545	0.60	-1.3
3,371,587	+		DZA65_RS15545	0.73	-0.7
3,371,587	+		DZA65_RS15545	0.73	+0.6
3,371,587	+		DZA65_RS15545	0.73	-1.6
3,371,587	+		DZA65_RS15545	0.73	-1.3
3,371,587	+		DZA65_RS15545	0.73	-0.8
3,371,588	-		DZA65_RS15545	0.73	-1.1
3,371,588	-		DZA65_RS15545	0.73	-2.6
3,371,588	-		DZA65_RS15545	0.73	+0.6
3,371,588	-		DZA65_RS15545	0.73	-1.6
3,371,588	-		DZA65_RS15545	0.73	-2.2
3,371,588	-		DZA65_RS15545	0.73	-0.4
3,371,588	-		DZA65_RS15545	0.73	-2.3