Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS15265 and DZA65_RS15270 are separated by 136 nucleotides DZA65_RS15270 and DZA65_RS15275 are separated by 106 nucleotides DZA65_RS15275 and DZA65_RS15280 are separated by 111 nucleotides
DZA65_RS15265: DZA65_RS15265 - YfbU family protein, at 3,312,353 to 3,312,847
_RS15265
DZA65_RS15270: DZA65_RS15270 - DUF412 domain-containing protein, at 3,312,984 to 3,313,439
_RS15270
DZA65_RS15275: DZA65_RS15275 - hypothetical protein, at 3,313,546 to 3,313,788
_RS15275
DZA65_RS15280: DZA65_RS15280 - acetate kinase, at 3,313,900 to 3,315,102
_RS15280
Position (kb) 3313
3314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3312.596 kb on - strand, within DZA65_RS15265 at 3312.659 kb on - strand, within DZA65_RS15265 at 3312.730 kb on - strand, within DZA65_RS15265 at 3312.745 kb on + strand, within DZA65_RS15265 at 3312.745 kb on + strand, within DZA65_RS15265 at 3312.745 kb on + strand, within DZA65_RS15265 at 3312.746 kb on - strand, within DZA65_RS15265 at 3312.820 kb on + strand at 3312.820 kb on + strand at 3312.821 kb on - strand at 3312.821 kb on - strand at 3312.835 kb on + strand at 3312.836 kb on - strand at 3312.850 kb on + strand at 3312.967 kb on + strand at 3312.980 kb on + strand at 3313.054 kb on + strand, within DZA65_RS15270 at 3313.054 kb on + strand, within DZA65_RS15270 at 3313.055 kb on - strand, within DZA65_RS15270 at 3313.055 kb on - strand, within DZA65_RS15270 at 3313.106 kb on + strand at 3313.131 kb on + strand, within DZA65_RS15270 at 3313.131 kb on + strand, within DZA65_RS15270 at 3313.132 kb on - strand, within DZA65_RS15270 at 3313.132 kb on - strand, within DZA65_RS15270 at 3313.132 kb on - strand, within DZA65_RS15270 at 3313.132 kb on - strand, within DZA65_RS15270 at 3313.132 kb on - strand, within DZA65_RS15270 at 3313.134 kb on + strand, within DZA65_RS15270 at 3313.135 kb on - strand, within DZA65_RS15270 at 3313.272 kb on + strand, within DZA65_RS15270 at 3313.272 kb on + strand, within DZA65_RS15270 at 3313.272 kb on + strand, within DZA65_RS15270 at 3313.273 kb on - strand, within DZA65_RS15270 at 3313.273 kb on - strand, within DZA65_RS15270 at 3313.273 kb on - strand, within DZA65_RS15270 at 3313.338 kb on + strand, within DZA65_RS15270 at 3313.339 kb on - strand, within DZA65_RS15270 at 3313.376 kb on + strand, within DZA65_RS15270 at 3313.376 kb on + strand, within DZA65_RS15270 at 3313.377 kb on - strand, within DZA65_RS15270 at 3313.377 kb on - strand, within DZA65_RS15270 at 3313.377 kb on - strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.378 kb on + strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.379 kb on - strand, within DZA65_RS15270 at 3313.404 kb on + strand at 3313.404 kb on + strand at 3313.405 kb on - strand at 3313.405 kb on - strand at 3313.405 kb on - strand at 3313.526 kb on + strand at 3313.547 kb on + strand at 3313.547 kb on + strand at 3313.605 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.746 kb on + strand, within DZA65_RS15275 at 3313.747 kb on - strand, within DZA65_RS15275 at 3313.747 kb on - strand, within DZA65_RS15275 at 3313.747 kb on - strand, within DZA65_RS15275 at 3313.747 kb on - strand, within DZA65_RS15275 at 3313.747 kb on - strand, within DZA65_RS15275 at 3313.818 kb on - strand at 3313.823 kb on + strand at 3313.823 kb on + strand at 3313.823 kb on + strand at 3313.823 kb on + strand at 3313.823 kb on + strand at 3313.824 kb on - strand at 3313.824 kb on - strand at 3313.824 kb on - strand at 3313.824 kb on - strand at 3313.859 kb on + strand at 3313.880 kb on + strand at 3313.880 kb on + strand at 3313.882 kb on + strand at 3313.883 kb on - strand at 3313.889 kb on + strand at 3313.889 kb on + strand at 3313.890 kb on - strand at 3313.908 kb on + strand at 3313.908 kb on + strand at 3313.909 kb on - strand at 3313.913 kb on + strand at 3313.913 kb on + strand at 3313.913 kb on + strand at 3313.913 kb on + strand at 3313.913 kb on + strand at 3313.917 kb on - strand at 3313.926 kb on + strand at 3313.926 kb on + strand at 3313.926 kb on + strand at 3313.927 kb on - strand at 3313.927 kb on - strand at 3313.985 kb on - strand at 3314.011 kb on - strand at 3314.172 kb on + strand, within DZA65_RS15280 at 3314.177 kb on + strand, within DZA65_RS15280 at 3314.177 kb on + strand, within DZA65_RS15280 at 3314.178 kb on - strand, within DZA65_RS15280 at 3314.178 kb on - strand, within DZA65_RS15280 at 3314.367 kb on + strand, within DZA65_RS15280 at 3314.368 kb on - strand, within DZA65_RS15280 at 3314.384 kb on - strand, within DZA65_RS15280 at 3314.384 kb on - strand, within DZA65_RS15280 at 3314.408 kb on + strand, within DZA65_RS15280 at 3314.408 kb on + strand, within DZA65_RS15280 at 3314.408 kb on + strand, within DZA65_RS15280 at 3314.409 kb on - strand, within DZA65_RS15280 at 3314.679 kb on + strand, within DZA65_RS15280 at 3314.679 kb on + strand, within DZA65_RS15280 at 3314.679 kb on + strand, within DZA65_RS15280 at 3314.688 kb on - strand, within DZA65_RS15280 at 3314.695 kb on - strand, within DZA65_RS15280 at 3314.766 kb on - strand, within DZA65_RS15280
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,312,596 - DZA65_RS15265 0.49 -0.0 3,312,659 - DZA65_RS15265 0.62 +1.2 3,312,730 - DZA65_RS15265 0.76 -0.1 3,312,745 + DZA65_RS15265 0.79 +0.4 3,312,745 + DZA65_RS15265 0.79 +0.2 3,312,745 + DZA65_RS15265 0.79 -0.1 3,312,746 - DZA65_RS15265 0.79 -2.7 3,312,820 + -0.7 3,312,820 + +1.1 3,312,821 - +1.9 3,312,821 - +0.5 3,312,835 + -0.5 3,312,836 - +0.4 3,312,850 + -1.4 3,312,967 + +0.2 3,312,980 + -0.4 3,313,054 + DZA65_RS15270 0.15 -0.0 3,313,054 + DZA65_RS15270 0.15 +0.9 3,313,055 - DZA65_RS15270 0.16 -0.3 3,313,055 - DZA65_RS15270 0.16 -0.3 3,313,106 + -0.1 3,313,131 + DZA65_RS15270 0.32 +0.8 3,313,131 + DZA65_RS15270 0.32 -1.9 3,313,132 - DZA65_RS15270 0.32 +0.1 3,313,132 - DZA65_RS15270 0.32 +0.5 3,313,132 - DZA65_RS15270 0.32 +1.0 3,313,132 - DZA65_RS15270 0.32 -2.2 3,313,132 - DZA65_RS15270 0.32 +1.2 3,313,134 + DZA65_RS15270 0.33 -0.9 3,313,135 - DZA65_RS15270 0.33 -2.3 3,313,272 + DZA65_RS15270 0.63 -0.7 3,313,272 + DZA65_RS15270 0.63 +0.3 3,313,272 + DZA65_RS15270 0.63 -1.7 3,313,273 - DZA65_RS15270 0.63 +0.6 3,313,273 - DZA65_RS15270 0.63 -0.5 3,313,273 - DZA65_RS15270 0.63 +0.1 3,313,338 + DZA65_RS15270 0.78 -1.5 3,313,339 - DZA65_RS15270 0.78 -0.5 3,313,376 + DZA65_RS15270 0.86 -1.3 3,313,376 + DZA65_RS15270 0.86 +0.4 3,313,377 - DZA65_RS15270 0.86 +0.3 3,313,377 - DZA65_RS15270 0.86 +0.0 3,313,377 - DZA65_RS15270 0.86 -0.9 3,313,378 + DZA65_RS15270 0.86 +0.1 3,313,378 + DZA65_RS15270 0.86 +0.6 3,313,378 + DZA65_RS15270 0.86 -0.3 3,313,378 + DZA65_RS15270 0.86 +0.2 3,313,378 + DZA65_RS15270 0.86 +1.1 3,313,378 + DZA65_RS15270 0.86 -0.3 3,313,378 + DZA65_RS15270 0.86 +0.6 3,313,378 + DZA65_RS15270 0.86 +0.8 3,313,378 + DZA65_RS15270 0.86 -0.3 3,313,378 + DZA65_RS15270 0.86 +0.2 3,313,378 + DZA65_RS15270 0.86 +0.9 3,313,379 - DZA65_RS15270 0.87 -0.7 3,313,379 - DZA65_RS15270 0.87 -0.1 3,313,379 - DZA65_RS15270 0.87 -0.1 3,313,379 - DZA65_RS15270 0.87 -1.4 3,313,379 - DZA65_RS15270 0.87 +0.5 3,313,379 - DZA65_RS15270 0.87 +0.5 3,313,379 - DZA65_RS15270 0.87 -1.4 3,313,379 - DZA65_RS15270 0.87 +1.1 3,313,379 - DZA65_RS15270 0.87 +1.5 3,313,379 - DZA65_RS15270 0.87 -3.0 3,313,379 - DZA65_RS15270 0.87 -0.9 3,313,404 + +0.3 3,313,404 + +0.9 3,313,405 - -1.7 3,313,405 - -1.0 3,313,405 - -2.3 3,313,526 + +1.4 3,313,547 + +0.7 3,313,547 + -1.1 3,313,605 + DZA65_RS15275 0.24 +0.0 3,313,746 + DZA65_RS15275 0.82 +0.7 3,313,746 + DZA65_RS15275 0.82 +0.7 3,313,746 + DZA65_RS15275 0.82 +1.5 3,313,746 + DZA65_RS15275 0.82 +1.1 3,313,746 + DZA65_RS15275 0.82 +0.5 3,313,746 + DZA65_RS15275 0.82 -1.1 3,313,747 - DZA65_RS15275 0.83 +0.2 3,313,747 - DZA65_RS15275 0.83 +0.1 3,313,747 - DZA65_RS15275 0.83 -1.0 3,313,747 - DZA65_RS15275 0.83 +1.5 3,313,747 - DZA65_RS15275 0.83 -1.9 3,313,818 - +0.9 3,313,823 + -0.3 3,313,823 + +0.9 3,313,823 + -0.3 3,313,823 + +0.2 3,313,823 + -0.7 3,313,824 - +0.2 3,313,824 - -1.4 3,313,824 - +1.9 3,313,824 - +0.5 3,313,859 + -2.3 3,313,880 + +0.7 3,313,880 + -1.4 3,313,882 + +0.9 3,313,883 - -2.8 3,313,889 + +0.5 3,313,889 + -1.4 3,313,890 - +0.5 3,313,908 + +0.9 3,313,908 + -0.1 3,313,909 - -3.0 3,313,913 + +0.3 3,313,913 + -1.1 3,313,913 + +0.7 3,313,913 + +1.9 3,313,913 + +0.9 3,313,917 - -2.3 3,313,926 + -1.1 3,313,926 + -1.4 3,313,926 + +1.0 3,313,927 - +0.1 3,313,927 - +0.5 3,313,985 - +1.5 3,314,011 - -0.1 3,314,172 + DZA65_RS15280 0.23 +1.7 3,314,177 + DZA65_RS15280 0.23 +0.6 3,314,177 + DZA65_RS15280 0.23 -1.7 3,314,178 - DZA65_RS15280 0.23 -2.3 3,314,178 - DZA65_RS15280 0.23 +0.1 3,314,367 + DZA65_RS15280 0.39 -0.1 3,314,368 - DZA65_RS15280 0.39 +0.7 3,314,384 - DZA65_RS15280 0.40 +0.5 3,314,384 - DZA65_RS15280 0.40 -0.3 3,314,408 + DZA65_RS15280 0.42 +0.4 3,314,408 + DZA65_RS15280 0.42 -1.2 3,314,408 + DZA65_RS15280 0.42 -1.7 3,314,409 - DZA65_RS15280 0.42 -0.6 3,314,679 + DZA65_RS15280 0.65 -2.3 3,314,679 + DZA65_RS15280 0.65 -0.8 3,314,679 + DZA65_RS15280 0.65 -1.7 3,314,688 - DZA65_RS15280 0.66 -1.7 3,314,695 - DZA65_RS15280 0.66 +0.1 3,314,766 - DZA65_RS15280 0.72 -1.1
Or see this region's nucleotide sequence