Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11765

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,509,649	+		DZA65_RS11755	0.79	-1.6
2,509,649	+		DZA65_RS11755	0.79	+1.8
2,509,771	-				-0.3
2,509,771	-				+0.2
2,509,800	-				-0.0
2,509,800	-				+0.9
2,509,884	+				+1.2
2,509,884	+				+0.4
2,509,884	+				-1.2
2,509,884	+				+0.5
2,509,884	+				+0.4
2,509,884	+				-0.3
2,509,885	-				-1.8
2,509,885	-				+1.1
2,509,885	-				+0.8
2,509,894	+				-0.0
2,509,894	+				-0.2
2,510,150	+		DZA65_RS11760	0.38	-1.8
2,510,150	+		DZA65_RS11760	0.38	+0.2
2,510,184	+		DZA65_RS11760	0.44	+0.1
2,510,184	+		DZA65_RS11760	0.44	+0.6
2,510,184	+		DZA65_RS11760	0.44	-0.2
2,510,184	+		DZA65_RS11760	0.44	-0.2
2,510,184	+		DZA65_RS11760	0.44	-0.9
2,510,184	+		DZA65_RS11760	0.44	+1.6
2,510,184	+		DZA65_RS11760	0.44	+0.8
2,510,184	+		DZA65_RS11760	0.44	-1.3
2,510,185	-		DZA65_RS11760	0.44	+1.2
2,510,185	-		DZA65_RS11760	0.44	+0.8
2,510,185	-		DZA65_RS11760	0.44	+0.6
2,510,236	-		DZA65_RS11760	0.53	+0.4
2,510,243	+		DZA65_RS11760	0.54	-2.4
2,510,243	+		DZA65_RS11760	0.54	-0.3
2,510,243	+		DZA65_RS11760	0.54	-0.4
2,510,243	+				-1.0
2,510,244	-		DZA65_RS11760	0.54	-1.4
2,510,244	-		DZA65_RS11760	0.54	+0.2
2,510,260	+		DZA65_RS11760	0.57	+1.1
2,510,261	-				+2.1
2,510,261	-				+1.0
2,510,261	-		DZA65_RS11760	0.57	-1.0
2,510,261	-		DZA65_RS11760	0.57	-0.4
2,510,398	+		DZA65_RS11760	0.81	-0.4
2,510,398	+		DZA65_RS11760	0.81	+0.2
2,510,399	-		DZA65_RS11760	0.81	-0.4
2,510,399	-		DZA65_RS11760	0.81	-0.9
2,510,399	-		DZA65_RS11760	0.81	-1.3
2,510,399	-		DZA65_RS11760	0.81	+0.6
2,510,399	-		DZA65_RS11760	0.81	-1.6
2,510,399	-		DZA65_RS11760	0.81	-0.2
2,510,407	+		DZA65_RS11760	0.83	-0.3
2,510,407	+		DZA65_RS11760	0.83	-2.0
2,510,408	-		DZA65_RS11760	0.83	+1.1
2,510,494	+				+0.2
2,510,494	+				+0.1
2,510,520	-				-2.0
2,510,544	-				-0.4
2,510,544	-				-0.1
2,510,544	-				+0.3
2,510,544	-				-0.1
2,510,544	-				+0.2
2,510,547	+				-1.6
2,510,547	+				+1.1
2,510,548	-				+1.4
2,510,548	-				+0.0
2,510,548	-				-1.0
2,510,548	-				+0.6
2,510,554	-				-0.0
2,510,566	+				+0.1
2,510,566	+				-0.1
2,510,567	-				+0.6
2,510,628	-				-0.8
2,510,628	-				+1.4
2,510,661	+				-1.4
2,510,664	+				+1.1
2,510,664	+				+0.1
2,510,700	+				+0.9
2,510,700	+				-0.0
2,510,700	+				-0.0
2,510,758	+				-0.6
2,510,827	+		DZA65_RS11765	0.13	-0.4
2,510,827	+		DZA65_RS11765	0.13	-0.3
2,510,827	+		DZA65_RS11765	0.13	+0.6
2,510,827	+		DZA65_RS11765	0.13	-0.4
2,510,827	+		DZA65_RS11765	0.13	-2.0
2,510,827	+		DZA65_RS11765	0.13	-0.9
2,510,828	-		DZA65_RS11765	0.13	+0.1
2,510,828	-		DZA65_RS11765	0.13	-0.3
2,510,828	-		DZA65_RS11765	0.13	+0.1
2,510,828	-		DZA65_RS11765	0.13	-1.4
2,510,828	-		DZA65_RS11765	0.13	-1.2
2,510,828	-		DZA65_RS11765	0.13	-0.5
2,510,828	-		DZA65_RS11765	0.13	-0.0
2,510,840	-		DZA65_RS11765	0.14	-1.0
2,510,858	+		DZA65_RS11765	0.15	-1.1
2,510,859	-		DZA65_RS11765	0.15	+0.2
2,510,862	+		DZA65_RS11765	0.16	+0.9
2,510,862	+		DZA65_RS11765	0.16	-0.2
2,510,863	-		DZA65_RS11765	0.16	-1.6
2,510,863	-		DZA65_RS11765	0.16	+1.9
2,510,980	-		DZA65_RS11765	0.24	-1.4
2,511,058	-		DZA65_RS11765	0.30	-0.4
2,511,088	+		DZA65_RS11765	0.32	+0.3
2,511,089	-		DZA65_RS11765	0.32	-1.4
2,511,089	-		DZA65_RS11765	0.32	-0.1
2,511,104	+		DZA65_RS11765	0.33	+0.0
2,511,104	+		DZA65_RS11765	0.33	-0.4
2,511,104	+		DZA65_RS11765	0.33	+1.3
2,511,104	+		DZA65_RS11765	0.33	+0.3
2,511,104	+		DZA65_RS11765	0.33	+2.7
2,511,104	+		DZA65_RS11765	0.33	+0.6
2,511,105	-		DZA65_RS11765	0.33	-0.3
2,511,105	-		DZA65_RS11765	0.33	+0.1
2,511,105	-		DZA65_RS11765	0.33	-0.3
2,511,105	-		DZA65_RS11765	0.33	+0.7
2,511,105	-		DZA65_RS11765	0.33	+0.0
2,511,105	-		DZA65_RS11765	0.33	-2.8
2,511,105	-		DZA65_RS11765	0.33	-0.7
2,511,105	-		DZA65_RS11765	0.33	-0.0
2,511,304	+		DZA65_RS11765	0.47	+0.6
2,511,304	+		DZA65_RS11765	0.47	-0.4
2,511,304	+		DZA65_RS11765	0.47	-1.0
2,511,304	+		DZA65_RS11765	0.47	-2.4
2,511,305	-		DZA65_RS11765	0.47	+0.6
2,511,305	-		DZA65_RS11765	0.47	-1.5
2,511,305	-		DZA65_RS11765	0.47	+0.6
2,511,305	-		DZA65_RS11765	0.47	-2.0
2,511,305	-		DZA65_RS11765	0.47	-0.7
2,511,314	+		DZA65_RS11765	0.48	+0.8
2,511,359	+		DZA65_RS11765	0.51	-1.3
2,511,360	-		DZA65_RS11765	0.51	-0.7
2,511,447	-		DZA65_RS11765	0.58	+0.6
2,511,474	+		DZA65_RS11765	0.60	-1.4
2,511,474	+		DZA65_RS11765	0.60	+0.2
2,511,475	-		DZA65_RS11765	0.60	-1.3
2,511,475	-		DZA65_RS11765	0.60	+0.0
2,511,475	-		DZA65_RS11765	0.60	+0.0
2,511,475	-		DZA65_RS11765	0.60	-0.4
2,511,475	-		DZA65_RS11765	0.60	-0.4
2,511,475	-		DZA65_RS11765	0.60	+0.8
2,511,593	-		DZA65_RS11765	0.68	+0.3
2,511,693	-		DZA65_RS11765	0.75	-0.0
2,511,729	+		DZA65_RS11765	0.78	+1.0
2,511,959	-				-0.4
2,511,961	+				-1.3
2,511,961	+				+1.0
2,511,988	+				-0.9
2,512,123	+				+0.2
2,512,124	-				+0.3
2,512,124	-				+0.3
2,512,179	-		DZA65_RS11770	0.24	+1.8
2,512,187	-		DZA65_RS11770	0.26	-0.6
2,512,187	-		DZA65_RS11770	0.26	-1.0
2,512,187	-		DZA65_RS11770	0.26	+0.2
2,512,187	-		DZA65_RS11770	0.26	+0.1
2,512,187	-		DZA65_RS11770	0.26	+0.4
2,512,189	+		DZA65_RS11770	0.27	+0.4
2,512,189	+		DZA65_RS11770	0.27	-3.5
2,512,190	-				-0.8
2,512,190	-		DZA65_RS11770	0.27	-0.8
2,512,222	+		DZA65_RS11770	0.37	-1.4
2,512,222	+		DZA65_RS11770	0.37	+1.6
2,512,222	+		DZA65_RS11770	0.37	-0.9
2,512,222	+		DZA65_RS11770	0.37	+0.1
2,512,222	+		DZA65_RS11770	0.37	+1.2
2,512,222	+		DZA65_RS11770	0.37	+1.1
2,512,222	+		DZA65_RS11770	0.37	-1.2
2,512,222	+		DZA65_RS11770	0.37	+0.5
2,512,222	+		DZA65_RS11770	0.37	+1.2
2,512,223	-		DZA65_RS11770	0.37	-0.8
2,512,223	-		DZA65_RS11770	0.37	+0.8
2,512,223	-		DZA65_RS11770	0.37	+1.0
2,512,223	-		DZA65_RS11770	0.37	-0.9
2,512,223	-		DZA65_RS11770	0.37	+0.3
2,512,226	+		DZA65_RS11770	0.38	+1.6
2,512,226	+		DZA65_RS11770	0.38	-0.2
2,512,226	+		DZA65_RS11770	0.38	-1.3
2,512,226	+		DZA65_RS11770	0.38	-0.4
2,512,226	+		DZA65_RS11770	0.38	-2.1
2,512,226	+		DZA65_RS11770	0.38	-0.0
2,512,226	+		DZA65_RS11770	0.38	+0.1
2,512,226	+		DZA65_RS11770	0.38	-2.3
2,512,226	+		DZA65_RS11770	0.38	-0.4
2,512,226	+		DZA65_RS11770	0.38	-0.3
2,512,226	+		DZA65_RS11770	0.38	-0.4
2,512,227	-		DZA65_RS11770	0.38	-0.6
2,512,227	-		DZA65_RS11770	0.38	-1.6
2,512,227	-		DZA65_RS11770	0.38	+0.4
2,512,227	-		DZA65_RS11770	0.38	+1.3
2,512,227	-		DZA65_RS11770	0.38	-2.0
2,512,227	-		DZA65_RS11770	0.38	-1.0
2,512,227	-		DZA65_RS11770	0.38	-0.8
2,512,227	-		DZA65_RS11770	0.38	+0.1
2,512,230	-		DZA65_RS11770	0.39	-0.3
2,512,230	-		DZA65_RS11770	0.39	-1.1
2,512,317	+		DZA65_RS11770	0.65	+1.1
2,512,363	+		DZA65_RS11770	0.79	-0.4
2,512,363	+		DZA65_RS11770	0.79	-0.2
2,512,364	-		DZA65_RS11770	0.80	-0.3
2,512,403	+				+0.2
2,512,403	+				-0.8
2,512,404	-				-0.0
2,512,436	-				-0.7
2,512,461	-				-0.7
2,512,466	+				+0.1
2,512,466	+				-0.3
2,512,467	+				+0.3
2,512,467	-				-0.9
2,512,467	-				+0.6
2,512,470	+				+1.1
2,512,470	+				+0.4
2,512,470	+				+0.6
2,512,471	-				+0.0
2,512,471	-				+1.1
2,512,471	-				+0.8
2,512,471	-				+0.7
2,512,518	+				-1.8
2,512,518	+				+0.5
2,512,518	+				-2.0
2,512,519	-				-1.0
2,512,547	+				+1.1
2,512,626	+				+0.1
2,512,635	-				+1.6