Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10280

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
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2,175,643	+			-0.6
2,175,644	-			+0.5
2,175,659	-			+0.4
2,175,706	-			+0.3
2,175,712	-			-2.6
2,175,712	-			+0.0
2,175,741	-			+0.3
2,175,742	+			+0.4
2,175,742	+			+0.8
2,175,746	+			+0.0
2,175,747	-			-0.6
2,175,835	-			+0.6
2,175,837	+			-0.2
2,175,838	-			-2.0
2,175,846	+			+1.4
2,175,900	+			+0.5
2,175,900	+			+0.3
2,175,900	+			+0.1
2,175,900	+			+1.8
2,175,900	+			-0.3
2,175,901	-			+0.6
2,175,901	-			-1.1
2,175,922	+	DZA65_RS10275	0.13	+0.2
2,176,065	+	DZA65_RS10275	0.36	+0.0
2,176,066	-	DZA65_RS10275	0.36	-1.7
2,176,066	-	DZA65_RS10275	0.36	-0.4
2,176,098	+	DZA65_RS10275	0.41	-0.4
2,176,098	+	DZA65_RS10275	0.41	-0.6
2,176,098	+	DZA65_RS10275	0.41	-0.3
2,176,098	+	DZA65_RS10275	0.41	+1.4
2,176,098	+	DZA65_RS10275	0.41	-0.1
2,176,098	+	DZA65_RS10275	0.41	-1.0
2,176,098	+	DZA65_RS10275	0.41	+1.1
2,176,098	+	DZA65_RS10275	0.41	-0.2
2,176,098	+	DZA65_RS10275	0.41	-0.5
2,176,098	+			-1.4
2,176,098	+	DZA65_RS10275	0.41	+2.6
2,176,098	+	DZA65_RS10275	0.41	+0.2
2,176,098	+	DZA65_RS10275	0.41	+0.0
2,176,098	+	DZA65_RS10275	0.41	-0.4
2,176,098	+	DZA65_RS10275	0.41	-0.4
2,176,098	+	DZA65_RS10275	0.41	+0.9
2,176,098	+	DZA65_RS10275	0.41	+0.7
2,176,098	+	DZA65_RS10275	0.41	-0.0
2,176,099	-	DZA65_RS10275	0.41	+0.2
2,176,099	-	DZA65_RS10275	0.41	-0.1
2,176,099	-	DZA65_RS10275	0.41	-0.1
2,176,099	-	DZA65_RS10275	0.41	+0.7
2,176,099	-	DZA65_RS10275	0.41	+0.8
2,176,099	-	DZA65_RS10275	0.41	+0.6
2,176,099	-	DZA65_RS10275	0.41	-0.7
2,176,099	-	DZA65_RS10275	0.41	-0.3
2,176,099	-	DZA65_RS10275	0.41	+0.6
2,176,099	-	DZA65_RS10275	0.41	-1.4
2,176,099	-	DZA65_RS10275	0.41	-1.7
2,176,099	-	DZA65_RS10275	0.41	-2.7
2,176,099	-	DZA65_RS10275	0.41	-1.4
2,176,293	+	DZA65_RS10275	0.73	+0.2
2,176,294	-	DZA65_RS10275	0.73	-0.9
2,176,294	-	DZA65_RS10275	0.73	-0.5
2,176,294	-	DZA65_RS10275	0.73	-1.0
2,176,326	+	DZA65_RS10275	0.78	+0.3
2,176,326	+	DZA65_RS10275	0.78	-1.7
2,176,326	+	DZA65_RS10275	0.78	-0.7
2,176,326	+	DZA65_RS10275	0.78	+1.7
2,176,327	-			+1.8
2,176,327	-	DZA65_RS10275	0.78	-1.8
2,176,327	-	DZA65_RS10275	0.78	+0.3
2,176,398	+			+0.1
2,176,399	-			+0.4
2,176,415	+			-0.6
2,176,415	+			+1.1
2,176,415	+			-2.2
2,176,504	-			-1.0
2,176,533	-			-0.4
2,176,568	+			-0.6
2,176,568	+			+1.4
2,176,568	+			-0.7
2,176,568	+			-0.2
2,176,569	-			-0.3
2,176,569	-			-1.4
2,176,569	-			-0.0
2,176,569	-			+0.3
2,176,569	-			-0.1
2,176,569	-			+0.1
2,176,570	+			+1.0
2,176,570	+			-0.5
2,176,571	-			-1.0
2,176,610	-			+1.8
2,176,744	+	DZA65_RS10280	0.13	-0.4
2,176,744	+	DZA65_RS10280	0.13	+1.9
2,176,924	+	DZA65_RS10280	0.37	+0.7
2,176,925	-	DZA65_RS10280	0.37	-0.6
2,176,976	-	DZA65_RS10280	0.44	+0.4
2,176,976	-	DZA65_RS10280	0.44	+0.4
2,177,029	-	DZA65_RS10280	0.51	-0.4
2,177,029	-	DZA65_RS10280	0.51	-0.5
2,177,055	+	DZA65_RS10280	0.54	+0.4
2,177,055	+	DZA65_RS10280	0.54	+0.0
2,177,055	+	DZA65_RS10280	0.54	+1.4
2,177,055	+	DZA65_RS10280	0.54	+0.9
2,177,055	+	DZA65_RS10280	0.54	-0.2
2,177,056	-	DZA65_RS10280	0.55	+0.0
2,177,056	-	DZA65_RS10280	0.55	+1.2
2,177,056	-	DZA65_RS10280	0.55	-1.2
2,177,056	-	DZA65_RS10280	0.55	-1.0
2,177,072	+	DZA65_RS10280	0.57	-0.4
2,177,072	+	DZA65_RS10280	0.57	+0.1
2,177,072	+	DZA65_RS10280	0.57	+0.6
2,177,072	+	DZA65_RS10280	0.57	-2.7
2,177,072	+	DZA65_RS10280	0.57	-1.4
2,177,207	+	DZA65_RS10280	0.75	-0.7
2,177,207	+	DZA65_RS10280	0.75	+0.4
2,177,207	+	DZA65_RS10280	0.75	-1.2
2,177,207	+	DZA65_RS10280	0.75	-0.0
2,177,207	+	DZA65_RS10280	0.75	+0.2
2,177,207	+	DZA65_RS10280	0.75	-1.2
2,177,207	+	DZA65_RS10280	0.75	+0.6
2,177,207	+	DZA65_RS10280	0.75	+1.0
2,177,207	+	DZA65_RS10280	0.75	+0.6
2,177,207	+	DZA65_RS10280	0.75	-0.9
2,177,208	-	DZA65_RS10280	0.75	+0.6
2,177,208	-	DZA65_RS10280	0.75	+0.9
2,177,208	-	DZA65_RS10280	0.75	+0.6
2,177,208	-	DZA65_RS10280	0.75	-2.3
2,177,208	-	DZA65_RS10280	0.75	+0.3
2,177,208	-	DZA65_RS10280	0.75	+1.8
2,177,208	-	DZA65_RS10280	0.75	+1.2
2,177,208	-	DZA65_RS10280	0.75	+1.2
2,177,208	-	DZA65_RS10280	0.75	+0.6
2,177,208	-	DZA65_RS10280	0.75	-0.8
2,177,209	+	DZA65_RS10280	0.75	+0.5
2,177,209	+	DZA65_RS10280	0.75	-0.4
2,177,210	-	DZA65_RS10280	0.75	-0.8
2,177,304	+	DZA65_RS10280	0.87	+0.0
2,177,304	+	DZA65_RS10280	0.87	-1.2
2,177,304	+	DZA65_RS10280	0.87	-0.8
2,177,304	+	DZA65_RS10280	0.87	+0.9
2,177,305	-	DZA65_RS10280	0.88	-0.8
2,177,305	-	DZA65_RS10280	0.88	+1.1
2,177,305	-	DZA65_RS10280	0.88	-1.7
2,177,308	+	DZA65_RS10280	0.88	+0.6
2,177,308	+	DZA65_RS10280	0.88	+0.0
2,177,308	+	DZA65_RS10280	0.88	+0.4
2,177,309	-	DZA65_RS10280	0.88	-0.5
2,177,309	-	DZA65_RS10280	0.88	+1.2
2,177,396	+			+0.4
2,177,397	-			+1.2
2,177,397	-			-0.5
2,177,408	+			+0.8
2,177,408	+			-0.1
2,177,408	+			-0.1
2,177,408	+			+0.3
2,177,409	-			-0.1
2,177,409	-			+0.5
2,177,415	+			-0.6
2,177,415	+			-2.0
2,177,415	+			-0.2
2,177,415	+			+0.3
2,177,415	+			+0.2
2,177,415	+			+1.8
2,177,416	-			+1.2
2,177,416	-			+0.6
2,177,416	-			-1.2
2,177,416	-			+0.2
2,177,416	-			-2.3
2,177,416	-			-0.2
2,177,416	-			+0.3
2,177,416	-			-1.7
2,177,549	+			-0.4
2,177,549	+	DZA65_RS10285	0.15	-0.4
2,177,818	-			+2.2
2,177,858	-	DZA65_RS10285	0.48	+0.1
2,178,053	-	DZA65_RS10285	0.68	-0.6
2,178,068	+	DZA65_RS10285	0.70	-1.7
2,178,069	-	DZA65_RS10285	0.70	+0.2
2,178,069	-	DZA65_RS10285	0.70	-1.0
2,178,296	+			-1.2
2,178,296	+			+0.0
2,178,296	+			+0.9
2,178,296	+			+0.4
2,178,297	-			-0.4
2,178,297	-			+0.8
2,178,297	-			+0.8
2,178,297	-			+0.6
2,178,346	+			+0.9
2,178,347	-			-0.0
2,178,347	-			+1.0
2,178,357	+			-2.0

Or see this region's nucleotide sequence