Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09990 and DZA65_RS09995 are separated by 113 nucleotides DZA65_RS09995 and DZA65_RS10000 are separated by 214 nucleotides
DZA65_RS09990: DZA65_RS09990 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 2,114,395 to 2,115,480
_RS09990
DZA65_RS09995: DZA65_RS09995 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,115,594 to 2,116,883
_RS09995
DZA65_RS10000: DZA65_RS10000 - (d)CMP kinase, at 2,117,098 to 2,117,784
_RS10000
Position (kb)
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1 at 2114.682 kb on + strand, within DZA65_RS09990 at 2114.827 kb on + strand, within DZA65_RS09990 at 2114.968 kb on + strand, within DZA65_RS09990 at 2115.073 kb on + strand, within DZA65_RS09990 at 2115.220 kb on + strand, within DZA65_RS09990 at 2115.220 kb on + strand, within DZA65_RS09990 at 2115.406 kb on + strand at 2115.481 kb on + strand at 2115.485 kb on + strand at 2115.503 kb on + strand at 2115.503 kb on + strand at 2115.503 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.508 kb on - strand at 2115.509 kb on + strand at 2115.509 kb on + strand at 2116.907 kb on + strand at 2116.907 kb on + strand at 2116.908 kb on - strand at 2116.908 kb on - strand at 2116.921 kb on - strand at 2116.950 kb on + strand at 2116.950 kb on + strand at 2116.950 kb on + strand at 2116.951 kb on - strand at 2116.957 kb on - strand at 2116.958 kb on + strand at 2116.958 kb on + strand at 2116.959 kb on - strand at 2116.959 kb on - strand at 2116.975 kb on + strand at 2116.975 kb on + strand at 2116.976 kb on - strand at 2116.999 kb on + strand at 2116.999 kb on + strand at 2116.999 kb on + strand at 2117.000 kb on - strand at 2117.000 kb on - strand at 2117.000 kb on - strand at 2117.035 kb on + strand at 2117.035 kb on + strand at 2117.035 kb on + strand at 2117.036 kb on - strand at 2117.045 kb on + strand at 2117.046 kb on - strand at 2117.046 kb on - strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.051 kb on - strand at 2117.051 kb on - strand at 2117.057 kb on + strand at 2117.057 kb on + strand at 2117.057 kb on + strand at 2117.085 kb on + strand at 2117.085 kb on + strand at 2117.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,114,682 + DZA65_RS09990 0.26 -2.5 2,114,827 + DZA65_RS09990 0.40 -2.2 2,114,968 + DZA65_RS09990 0.53 -1.0 2,115,073 + DZA65_RS09990 0.62 -0.8 2,115,220 + DZA65_RS09990 0.76 -2.4 2,115,220 + DZA65_RS09990 0.76 -0.7 2,115,406 + -0.9 2,115,481 + +0.3 2,115,485 + -1.0 2,115,503 + -0.3 2,115,503 + -1.0 2,115,503 + -0.8 2,115,507 + +1.4 2,115,507 + +0.0 2,115,507 + -1.0 2,115,507 + +0.3 2,115,507 + -1.4 2,115,507 + -0.2 2,115,508 - +0.9 2,115,509 + +0.3 2,115,509 + +0.9 2,116,907 + -0.0 2,116,907 + -2.1 2,116,908 - -1.6 2,116,908 - -1.2 2,116,921 - -1.0 2,116,950 + -0.1 2,116,950 + +0.0 2,116,950 + +0.5 2,116,951 - -0.3 2,116,957 - -0.2 2,116,958 + -0.5 2,116,958 + +0.5 2,116,959 - +0.8 2,116,959 - -0.4 2,116,975 + +1.0 2,116,975 + +1.0 2,116,976 - -0.6 2,116,999 + +0.2 2,116,999 + +0.5 2,116,999 + -0.5 2,117,000 - +0.6 2,117,000 - -0.5 2,117,000 - -0.1 2,117,035 + +0.1 2,117,035 + -0.6 2,117,035 + -0.8 2,117,036 - -0.4 2,117,045 + -2.0 2,117,046 - -1.8 2,117,046 - +0.0 2,117,050 + -1.1 2,117,050 + -1.0 2,117,050 + -0.2 2,117,050 + -0.4 2,117,051 - +0.1 2,117,051 - -0.5 2,117,057 + +0.6 2,117,057 + -0.5 2,117,057 + -1.1 2,117,085 + +0.0 2,117,085 + -1.0 2,117,795 + -0.4
Or see this region's nucleotide sequence