Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06125

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06120 and DZA65_RS06125 are separated by 142 nucleotidesDZA65_RS06125 and DZA65_RS06130 are separated by 82 nucleotides DZA65_RS06120: DZA65_RS06120 - efflux RND transporter periplasmic adaptor subunit, at 1,263,823 to 1,265,016 _RS06120 DZA65_RS06125: DZA65_RS06125 - multidrug efflux transporter transcriptional repressor AcrR, at 1,265,159 to 1,265,809 _RS06125 DZA65_RS06130: DZA65_RS06130 - mechanosensitive channel MscK, at 1,265,892 to 1,269,272 _RS06130 Position (kb) 1265 1266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1264.248 kb on + strand, within DZA65_RS06120at 1264.248 kb on + strand, within DZA65_RS06120at 1264.250 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.373 kb on + strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.374 kb on - strand, within DZA65_RS06120at 1264.396 kb on - strand, within DZA65_RS06120at 1264.396 kb on - strand, within DZA65_RS06120at 1264.455 kb on + strand, within DZA65_RS06120at 1264.493 kb on + strand, within DZA65_RS06120at 1264.493 kb on + strand, within DZA65_RS06120at 1264.493 kb on + strand, within DZA65_RS06120at 1264.493 kb on + strand, within DZA65_RS06120at 1264.494 kb on - strand, within DZA65_RS06120at 1264.494 kb on - strand, within DZA65_RS06120at 1264.494 kb on - strand, within DZA65_RS06120at 1264.503 kb on + strand, within DZA65_RS06120at 1264.503 kb on + strand, within DZA65_RS06120at 1264.583 kb on + strand, within DZA65_RS06120at 1264.584 kb on - strand, within DZA65_RS06120at 1264.584 kb on - strand, within DZA65_RS06120at 1264.601 kb on + strand, within DZA65_RS06120at 1264.601 kb on + strand, within DZA65_RS06120at 1264.601 kb on + strand, within DZA65_RS06120at 1264.602 kb on - strand, within DZA65_RS06120at 1264.602 kb on - strand, within DZA65_RS06120at 1264.626 kb on - strand, within DZA65_RS06120at 1264.698 kb on - strand, within DZA65_RS06120at 1264.709 kb on + strand, within DZA65_RS06120at 1264.709 kb on + strand, within DZA65_RS06120at 1264.730 kb on + strand, within DZA65_RS06120at 1264.730 kb on + strandat 1264.731 kb on - strand, within DZA65_RS06120at 1264.785 kb on + strand, within DZA65_RS06120at 1264.785 kb on + strand, within DZA65_RS06120at 1264.786 kb on - strand, within DZA65_RS06120at 1264.788 kb on + strand, within DZA65_RS06120at 1264.788 kb on + strand, within DZA65_RS06120at 1264.788 kb on + strand, within DZA65_RS06120at 1264.789 kb on - strand, within DZA65_RS06120at 1264.789 kb on - strand, within DZA65_RS06120at 1264.807 kb on + strand, within DZA65_RS06120at 1264.807 kb on + strand, within DZA65_RS06120at 1264.807 kb on + strand, within DZA65_RS06120at 1264.808 kb on - strand, within DZA65_RS06120at 1264.808 kb on - strand, within DZA65_RS06120at 1264.808 kb on - strand, within DZA65_RS06120at 1264.808 kb on - strand, within DZA65_RS06120at 1264.818 kb on + strand, within DZA65_RS06120at 1264.857 kb on + strand, within DZA65_RS06120at 1264.881 kb on + strandat 1264.881 kb on + strand, within DZA65_RS06120at 1264.881 kb on + strand, within DZA65_RS06120at 1264.882 kb on - strand, within DZA65_RS06120at 1264.882 kb on - strand, within DZA65_RS06120at 1264.882 kb on - strand, within DZA65_RS06120at 1264.882 kb on - strand, within DZA65_RS06120at 1264.995 kb on + strandat 1264.995 kb on + strandat 1265.011 kb on - strandat 1265.011 kb on - strandat 1265.011 kb on - strandat 1265.016 kb on + strandat 1265.017 kb on - strandat 1265.017 kb on - strandat 1265.017 kb on - strandat 1265.017 kb on - strandat 1265.020 kb on + strandat 1265.020 kb on + strandat 1265.020 kb on + strandat 1265.020 kb on + strandat 1265.021 kb on - strandat 1265.021 kb on - strandat 1265.021 kb on - strandat 1265.021 kb on - strandat 1265.068 kb on + strandat 1265.102 kb on + strandat 1265.103 kb on - strandat 1265.107 kb on + strandat 1265.108 kb on - strandat 1265.108 kb on - strandat 1265.111 kb on + strandat 1265.111 kb on + strandat 1265.112 kb on - strandat 1265.112 kb on - strandat 1265.158 kb on + strandat 1265.299 kb on + strand, within DZA65_RS06125at 1265.299 kb on + strand, within DZA65_RS06125at 1265.299 kb on + strand, within DZA65_RS06125at 1265.300 kb on - strand, within DZA65_RS06125at 1265.314 kb on + strand, within DZA65_RS06125at 1265.321 kb on - strand, within DZA65_RS06125at 1265.343 kb on + strand, within DZA65_RS06125at 1265.343 kb on + strand, within DZA65_RS06125at 1265.425 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.441 kb on + strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.442 kb on - strand, within DZA65_RS06125at 1265.443 kb on + strand, within DZA65_RS06125at 1265.443 kb on + strand, within DZA65_RS06125at 1265.443 kb on + strand, within DZA65_RS06125at 1265.444 kb on - strand, within DZA65_RS06125at 1265.444 kb on - strand, within DZA65_RS06125at 1265.444 kb on - strand, within DZA65_RS06125at 1265.493 kb on + strand, within DZA65_RS06125at 1265.494 kb on - strand, within DZA65_RS06125at 1265.558 kb on + strand, within DZA65_RS06125at 1265.558 kb on + strand, within DZA65_RS06125at 1265.559 kb on - strand, within DZA65_RS06125at 1265.571 kb on - strand, within DZA65_RS06125at 1265.581 kb on - strand, within DZA65_RS06125at 1265.581 kb on - strand, within DZA65_RS06125at 1265.581 kb on - strand, within DZA65_RS06125at 1265.581 kb on - strand, within DZA65_RS06125at 1265.581 kb on - strand, within DZA65_RS06125at 1265.602 kb on + strand, within DZA65_RS06125at 1265.666 kb on + strand, within DZA65_RS06125at 1265.667 kb on - strand, within DZA65_RS06125at 1265.667 kb on - strand, within DZA65_RS06125at 1265.678 kb on - strand, within DZA65_RS06125at 1265.698 kb on + strand, within DZA65_RS06125at 1265.699 kb on - strand, within DZA65_RS06125at 1265.736 kb on - strand, within DZA65_RS06125at 1265.752 kb on + strandat 1265.821 kb on - strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.832 kb on + strandat 1265.833 kb on - strandat 1265.833 kb on - strandat 1265.833 kb on - strandat 1265.833 kb on - strandat 1265.833 kb on - strandat 1265.833 kb on - strandat 1265.856 kb on + strandat 1265.857 kb on - strandat 1265.976 kb on + strandat 1266.074 kb on + strandat 1266.372 kb on + strand, within DZA65_RS06130at 1266.372 kb on + strand, within DZA65_RS06130at 1266.372 kb on + strand, within DZA65_RS06130at 1266.372 kb on + strand, within DZA65_RS06130at 1266.373 kb on - strand, within DZA65_RS06130at 1266.373 kb on - strand, within DZA65_RS06130at 1266.373 kb on - strand, within DZA65_RS06130at 1266.427 kb on + strand, within DZA65_RS06130at 1266.427 kb on + strand, within DZA65_RS06130at 1266.427 kb on + strand, within DZA65_RS06130at 1266.428 kb on - strand, within DZA65_RS06130at 1266.428 kb on - strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strandat 1266.429 kb on + strand, within DZA65_RS06130at 1266.429 kb on + strand, within DZA65_RS06130at 1266.430 kb on - strand, within DZA65_RS06130at 1266.430 kb on - strand, within DZA65_RS06130at 1266.430 kb on - strand, within DZA65_RS06130at 1266.430 kb on - strandat 1266.624 kb on + strand, within DZA65_RS06130at 1266.625 kb on - strand, within DZA65_RS06130at 1266.625 kb on - strand, within DZA65_RS06130at 1266.625 kb on - strand, within DZA65_RS06130at 1266.745 kb on + strand, within DZA65_RS06130at 1266.745 kb on + strand, within DZA65_RS06130at 1266.746 kb on - strand, within DZA65_RS06130at 1266.752 kb on + strand, within DZA65_RS06130at 1266.752 kb on + strand, within DZA65_RS06130at 1266.753 kb on - strand, within DZA65_RS06130at 1266.753 kb on - strand, within DZA65_RS06130at 1266.753 kb on - strand, within DZA65_RS06130

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,264,248 + DZA65_RS06120 0.36 -0.7
1,264,248 + DZA65_RS06120 0.36 -1.1
1,264,250 + DZA65_RS06120 0.36 +0.0
1,264,373 + DZA65_RS06120 0.46 +1.0
1,264,373 + DZA65_RS06120 0.46 +1.6
1,264,373 + DZA65_RS06120 0.46 +0.2
1,264,373 + DZA65_RS06120 0.46 +0.2
1,264,373 + DZA65_RS06120 0.46 +0.3
1,264,373 + DZA65_RS06120 0.46 -1.5
1,264,373 + DZA65_RS06120 0.46 +1.5
1,264,373 + DZA65_RS06120 0.46 +1.0
1,264,373 + DZA65_RS06120 0.46 +0.5
1,264,373 + DZA65_RS06120 0.46 +0.7
1,264,373 + DZA65_RS06120 0.46 +1.6
1,264,373 + DZA65_RS06120 0.46 -1.5
1,264,374 - DZA65_RS06120 0.46 +0.6
1,264,374 - DZA65_RS06120 0.46 -1.0
1,264,374 - DZA65_RS06120 0.46 -0.2
1,264,374 - DZA65_RS06120 0.46 -1.3
1,264,374 - DZA65_RS06120 0.46 -0.0
1,264,374 - DZA65_RS06120 0.46 +0.8
1,264,374 - DZA65_RS06120 0.46 -1.0
1,264,374 - DZA65_RS06120 0.46 +0.4
1,264,374 - DZA65_RS06120 0.46 +0.2
1,264,374 - DZA65_RS06120 0.46 -2.0
1,264,374 - DZA65_RS06120 0.46 -0.9
1,264,374 - DZA65_RS06120 0.46 +0.3
1,264,374 - DZA65_RS06120 0.46 -1.0
1,264,396 - DZA65_RS06120 0.48 -1.8
1,264,396 - DZA65_RS06120 0.48 +1.8
1,264,455 + DZA65_RS06120 0.53 +1.0
1,264,493 + DZA65_RS06120 0.56 -0.3
1,264,493 + DZA65_RS06120 0.56 +1.0
1,264,493 + DZA65_RS06120 0.56 +1.1
1,264,493 + DZA65_RS06120 0.56 +0.5
1,264,494 - DZA65_RS06120 0.56 -0.1
1,264,494 - DZA65_RS06120 0.56 +0.2
1,264,494 - DZA65_RS06120 0.56 +1.5
1,264,503 + DZA65_RS06120 0.57 +2.6
1,264,503 + DZA65_RS06120 0.57 +0.5
1,264,583 + DZA65_RS06120 0.64 +1.0
1,264,584 - DZA65_RS06120 0.64 +0.2
1,264,584 - DZA65_RS06120 0.64 -2.0
1,264,601 + DZA65_RS06120 0.65 +0.6
1,264,601 + DZA65_RS06120 0.65 +2.0
1,264,601 + DZA65_RS06120 0.65 +0.4
1,264,602 - DZA65_RS06120 0.65 -0.0
1,264,602 - DZA65_RS06120 0.65 +1.5
1,264,626 - DZA65_RS06120 0.67 +0.9
1,264,698 - DZA65_RS06120 0.73 -1.3
1,264,709 + DZA65_RS06120 0.74 +0.5
1,264,709 + DZA65_RS06120 0.74 +0.2
1,264,730 + DZA65_RS06120 0.76 +0.5
1,264,730 + +0.7
1,264,731 - DZA65_RS06120 0.76 +0.5
1,264,785 + DZA65_RS06120 0.81 +0.7
1,264,785 + DZA65_RS06120 0.81 -0.0
1,264,786 - DZA65_RS06120 0.81 -0.8
1,264,788 + DZA65_RS06120 0.81 +0.8
1,264,788 + DZA65_RS06120 0.81 +1.2
1,264,788 + DZA65_RS06120 0.81 +0.4
1,264,789 - DZA65_RS06120 0.81 +2.6
1,264,789 - DZA65_RS06120 0.81 +1.4
1,264,807 + DZA65_RS06120 0.82 -2.6
1,264,807 + DZA65_RS06120 0.82 -0.1
1,264,807 + DZA65_RS06120 0.82 -2.5
1,264,808 - DZA65_RS06120 0.82 -0.4
1,264,808 - DZA65_RS06120 0.82 -0.0
1,264,808 - DZA65_RS06120 0.82 -1.3
1,264,808 - DZA65_RS06120 0.82 -1.6
1,264,818 + DZA65_RS06120 0.83 -1.0
1,264,857 + DZA65_RS06120 0.87 +1.0
1,264,881 + -0.0
1,264,881 + DZA65_RS06120 0.89 -1.7
1,264,881 + DZA65_RS06120 0.89 -3.2
1,264,882 - DZA65_RS06120 0.89 -0.5
1,264,882 - DZA65_RS06120 0.89 -0.8
1,264,882 - DZA65_RS06120 0.89 -0.0
1,264,882 - DZA65_RS06120 0.89 -1.0
1,264,995 + +0.2
1,264,995 + +0.4
1,265,011 - +0.1
1,265,011 - +0.3
1,265,011 - +0.2
1,265,016 + -0.6
1,265,017 - -1.8
1,265,017 - -1.0
1,265,017 - +0.0
1,265,017 - +1.3
1,265,020 + -0.3
1,265,020 + -0.8
1,265,020 + -0.7
1,265,020 + -0.0
1,265,021 - +0.2
1,265,021 - +0.1
1,265,021 - -0.7
1,265,021 - -1.6
1,265,068 + -0.0
1,265,102 + -2.3
1,265,103 - -0.0
1,265,107 + -1.0
1,265,108 - +1.4
1,265,108 - +0.4
1,265,111 + -0.9
1,265,111 + -0.6
1,265,112 - +1.1
1,265,112 - -1.2
1,265,158 + -1.0
1,265,299 + DZA65_RS06125 0.22 -1.5
1,265,299 + DZA65_RS06125 0.22 +0.3
1,265,299 + DZA65_RS06125 0.22 +0.4
1,265,300 - DZA65_RS06125 0.22 +0.4
1,265,314 + DZA65_RS06125 0.24 +1.0
1,265,321 - DZA65_RS06125 0.25 +2.6
1,265,343 + DZA65_RS06125 0.28 +1.1
1,265,343 + DZA65_RS06125 0.28 +0.5
1,265,425 + DZA65_RS06125 0.41 +0.9
1,265,441 + DZA65_RS06125 0.43 +0.8
1,265,441 + DZA65_RS06125 0.43 -2.2
1,265,441 + DZA65_RS06125 0.43 -1.8
1,265,441 + DZA65_RS06125 0.43 +0.8
1,265,441 + DZA65_RS06125 0.43 +0.8
1,265,441 + DZA65_RS06125 0.43 -1.0
1,265,441 + DZA65_RS06125 0.43 -0.0
1,265,441 + DZA65_RS06125 0.43 +1.1
1,265,441 + DZA65_RS06125 0.43 +0.5
1,265,442 - DZA65_RS06125 0.43 +0.2
1,265,442 - DZA65_RS06125 0.43 -2.5
1,265,442 - DZA65_RS06125 0.43 -0.8
1,265,442 - DZA65_RS06125 0.43 +1.0
1,265,442 - DZA65_RS06125 0.43 +1.6
1,265,442 - DZA65_RS06125 0.43 -0.2
1,265,442 - DZA65_RS06125 0.43 -1.3
1,265,443 + DZA65_RS06125 0.44 -0.1
1,265,443 + DZA65_RS06125 0.44 +1.0
1,265,443 + DZA65_RS06125 0.44 -0.7
1,265,444 - DZA65_RS06125 0.44 +1.0
1,265,444 - DZA65_RS06125 0.44 +0.5
1,265,444 - DZA65_RS06125 0.44 +0.4
1,265,493 + DZA65_RS06125 0.51 +0.0
1,265,494 - DZA65_RS06125 0.51 +1.0
1,265,558 + DZA65_RS06125 0.61 +0.9
1,265,558 + DZA65_RS06125 0.61 +0.6
1,265,559 - DZA65_RS06125 0.61 +2.0
1,265,571 - DZA65_RS06125 0.63 -0.6
1,265,581 - DZA65_RS06125 0.65 +0.6
1,265,581 - DZA65_RS06125 0.65 +2.0
1,265,581 - DZA65_RS06125 0.65 -2.6
1,265,581 - DZA65_RS06125 0.65 +1.6
1,265,581 - DZA65_RS06125 0.65 -0.6
1,265,602 + DZA65_RS06125 0.68 -0.5
1,265,666 + DZA65_RS06125 0.78 +0.7
1,265,667 - DZA65_RS06125 0.78 +0.7
1,265,667 - DZA65_RS06125 0.78 +0.3
1,265,678 - DZA65_RS06125 0.80 +2.0
1,265,698 + DZA65_RS06125 0.83 +2.2
1,265,699 - DZA65_RS06125 0.83 +1.6
1,265,736 - DZA65_RS06125 0.89 +1.4
1,265,752 + +2.0
1,265,821 - -0.9
1,265,832 + -0.2
1,265,832 + -0.1
1,265,832 + -0.2
1,265,832 + +1.1
1,265,832 + +0.1
1,265,832 + +0.6
1,265,832 + +0.2
1,265,832 + -1.6
1,265,833 - -0.2
1,265,833 - +1.0
1,265,833 - -0.4
1,265,833 - +1.0
1,265,833 - -1.2
1,265,833 - -1.1
1,265,856 + +0.1
1,265,857 - -0.3
1,265,976 + +0.6
1,266,074 + -0.0
1,266,372 + DZA65_RS06130 0.14 +1.0
1,266,372 + DZA65_RS06130 0.14 +0.5
1,266,372 + DZA65_RS06130 0.14 +0.8
1,266,372 + DZA65_RS06130 0.14 +0.2
1,266,373 - DZA65_RS06130 0.14 +0.7
1,266,373 - DZA65_RS06130 0.14 +0.3
1,266,373 - DZA65_RS06130 0.14 -0.7
1,266,427 + DZA65_RS06130 0.16 +0.4
1,266,427 + DZA65_RS06130 0.16 +0.7
1,266,427 + DZA65_RS06130 0.16 -1.0
1,266,428 - DZA65_RS06130 0.16 -0.1
1,266,428 - DZA65_RS06130 0.16 +0.7
1,266,429 + DZA65_RS06130 0.16 -1.7
1,266,429 + DZA65_RS06130 0.16 +0.5
1,266,429 + DZA65_RS06130 0.16 -0.6
1,266,429 + DZA65_RS06130 0.16 +0.5
1,266,429 + DZA65_RS06130 0.16 -0.6
1,266,429 + +1.0
1,266,429 + DZA65_RS06130 0.16 +3.0
1,266,429 + DZA65_RS06130 0.16 -1.8
1,266,430 - DZA65_RS06130 0.16 -1.8
1,266,430 - DZA65_RS06130 0.16 -1.0
1,266,430 - DZA65_RS06130 0.16 +0.5
1,266,430 - -1.6
1,266,624 + DZA65_RS06130 0.22 -0.3
1,266,625 - DZA65_RS06130 0.22 +0.9
1,266,625 - DZA65_RS06130 0.22 -0.3
1,266,625 - DZA65_RS06130 0.22 -0.4
1,266,745 + DZA65_RS06130 0.25 +1.3
1,266,745 + DZA65_RS06130 0.25 +0.4
1,266,746 - DZA65_RS06130 0.25 -1.6
1,266,752 + DZA65_RS06130 0.25 -1.7
1,266,752 + DZA65_RS06130 0.25 -0.1
1,266,753 - DZA65_RS06130 0.25 -0.2
1,266,753 - DZA65_RS06130 0.25 -1.3
1,266,753 - DZA65_RS06130 0.25 +0.7

Or see this region's nucleotide sequence