Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05495

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05490 and DZA65_RS05495 are separated by 34 nucleotidesDZA65_RS05495 and DZA65_RS05500 are separated by 138 nucleotidesDZA65_RS05500 and DZA65_RS05505 are separated by 3 nucleotides DZA65_RS05490: DZA65_RS05490 - sigma E protease regulator RseP, at 1,128,834 to 1,130,189 _RS05490 DZA65_RS05495: DZA65_RS05495 - outer membrane protein assembly factor BamA, at 1,130,224 to 1,132,641 _RS05495 DZA65_RS05500: DZA65_RS05500 - molecular chaperone Skp, at 1,132,780 to 1,133,277 _RS05500 DZA65_RS05505: DZA65_RS05505 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,133,281 to 1,134,303 _RS05505 Position (kb) 1130 1131 1132 1133Strain fitness (log2 ratio) -2 -1 0 1 2at 1129.237 kb on + strand, within DZA65_RS05490at 1129.238 kb on - strand, within DZA65_RS05490at 1129.247 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.387 kb on + strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.400 kb on + strand, within DZA65_RS05490at 1129.401 kb on - strand, within DZA65_RS05490at 1129.779 kb on + strand, within DZA65_RS05490at 1129.781 kb on + strand, within DZA65_RS05490at 1129.781 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.865 kb on + strand, within DZA65_RS05490at 1129.865 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.956 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1130.114 kb on + strandat 1130.114 kb on + strandat 1130.114 kb on + strandat 1130.149 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.216 kb on + strandat 1130.216 kb on + strandat 1132.639 kb on + strandat 1132.639 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.731 kb on + strandat 1132.757 kb on + strandat 1132.757 kb on + strandat 1132.757 kb on + strandat 1132.761 kb on + strandat 1132.761 kb on + strandat 1132.761 kb on + strandat 1132.808 kb on + strandat 1132.962 kb on + strand, within DZA65_RS05500at 1132.962 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,129,237 + DZA65_RS05490 0.30 -1.2
1,129,238 - DZA65_RS05490 0.30 -0.2
1,129,247 + DZA65_RS05490 0.30 +1.6
1,129,285 + DZA65_RS05490 0.33 -1.6
1,129,285 + DZA65_RS05490 0.33 +0.8
1,129,285 + DZA65_RS05490 0.33 -0.9
1,129,285 + DZA65_RS05490 0.33 -0.4
1,129,286 - DZA65_RS05490 0.33 -1.1
1,129,286 - DZA65_RS05490 0.33 -0.7
1,129,286 - DZA65_RS05490 0.33 -0.6
1,129,286 - DZA65_RS05490 0.33 +1.6
1,129,286 - DZA65_RS05490 0.33 +0.5
1,129,286 - DZA65_RS05490 0.33 -0.6
1,129,286 - DZA65_RS05490 0.33 +2.0
1,129,286 - DZA65_RS05490 0.33 +0.0
1,129,286 - DZA65_RS05490 0.33 -0.6
1,129,387 + DZA65_RS05490 0.41 -0.7
1,129,388 - DZA65_RS05490 0.41 -0.4
1,129,388 - DZA65_RS05490 0.41 -1.0
1,129,388 - DZA65_RS05490 0.41 -1.0
1,129,394 + DZA65_RS05490 0.41 -0.3
1,129,394 + DZA65_RS05490 0.41 +1.3
1,129,394 + DZA65_RS05490 0.41 -2.4
1,129,395 - DZA65_RS05490 0.41 -0.8
1,129,395 - DZA65_RS05490 0.41 -0.9
1,129,395 - DZA65_RS05490 0.41 -1.4
1,129,395 - DZA65_RS05490 0.41 -0.1
1,129,395 - DZA65_RS05490 0.41 -0.2
1,129,395 - DZA65_RS05490 0.41 -0.2
1,129,400 + DZA65_RS05490 0.42 -0.6
1,129,401 - DZA65_RS05490 0.42 -1.3
1,129,779 + DZA65_RS05490 0.70 -1.5
1,129,781 + DZA65_RS05490 0.70 -0.6
1,129,781 + DZA65_RS05490 0.70 +2.6
1,129,818 + DZA65_RS05490 0.73 -1.0
1,129,818 + DZA65_RS05490 0.73 -0.5
1,129,818 + DZA65_RS05490 0.73 -2.3
1,129,818 + DZA65_RS05490 0.73 -0.4
1,129,818 + DZA65_RS05490 0.73 -1.2
1,129,865 + DZA65_RS05490 0.76 +0.0
1,129,865 + DZA65_RS05490 0.76 -0.6
1,129,943 + DZA65_RS05490 0.82 -0.9
1,129,943 + DZA65_RS05490 0.82 -0.2
1,129,943 + DZA65_RS05490 0.82 +0.5
1,129,943 + DZA65_RS05490 0.82 +0.0
1,129,956 + DZA65_RS05490 0.83 +0.2
1,129,968 + DZA65_RS05490 0.84 -0.5
1,129,968 + DZA65_RS05490 0.84 -0.6
1,129,968 + DZA65_RS05490 0.84 -1.0
1,129,968 + DZA65_RS05490 0.84 -0.2
1,129,968 + DZA65_RS05490 0.84 -0.8
1,129,971 + DZA65_RS05490 0.84 -1.6
1,129,971 + DZA65_RS05490 0.84 +0.4
1,129,971 + DZA65_RS05490 0.84 +0.0
1,129,971 + DZA65_RS05490 0.84 +0.8
1,129,971 + DZA65_RS05490 0.84 +0.0
1,130,114 + -0.8
1,130,114 + +1.4
1,130,114 + +1.0
1,130,149 + -0.6
1,130,187 + -1.2
1,130,187 + -0.4
1,130,187 + -0.4
1,130,187 + +2.4
1,130,216 + -0.9
1,130,216 + +1.8
1,132,639 + +1.0
1,132,639 + -0.7
1,132,643 + +0.0
1,132,643 + +0.4
1,132,643 + -0.1
1,132,643 + -1.0
1,132,643 + +1.0
1,132,643 + -1.1
1,132,677 + +0.3
1,132,677 + -0.3
1,132,677 + -1.0
1,132,677 + -0.6
1,132,731 + +0.0
1,132,757 + -0.6
1,132,757 + -1.3
1,132,757 + -0.6
1,132,761 + +0.1
1,132,761 + +0.5
1,132,761 + -0.3
1,132,808 + +0.4
1,132,962 + DZA65_RS05500 0.37 +1.2
1,132,962 + DZA65_RS05500 0.37 +1.3
1,133,013 + DZA65_RS05500 0.47 +0.2
1,133,013 + DZA65_RS05500 0.47 +2.3
1,133,013 + DZA65_RS05500 0.47 +1.6
1,133,224 + DZA65_RS05500 0.89 +1.3
1,133,224 + DZA65_RS05500 0.89 +1.5
1,133,224 + DZA65_RS05500 0.89 +0.4

Or see this region's nucleotide sequence