Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04750 and DZA65_RS04755 overlap by 4 nucleotides DZA65_RS04755 and DZA65_RS04760 are separated by 2 nucleotides DZA65_RS04760 and DZA65_RS04765 are separated by 4 nucleotides
DZA65_RS04750: DZA65_RS04750 - Appr-1-p processing protein, at 986,840 to 987,907
_RS04750
DZA65_RS04755: DZA65_RS04755 - DUF4433 domain-containing protein, at 987,904 to 988,560
_RS04755
DZA65_RS04760: DZA65_RS04760 - DUF4433 domain-containing protein, at 988,563 to 989,138
_RS04760
DZA65_RS04765: DZA65_RS04765 - restriction endonuclease subunit S, at 989,143 to 990,492
_RS04765
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 988.614 kb on - strand at 988.614 kb on - strand at 988.615 kb on + strand at 988.615 kb on + strand at 988.615 kb on + strand at 988.616 kb on - strand at 988.634 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.692 kb on + strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.721 kb on + strand, within DZA65_RS04760 at 988.722 kb on - strand, within DZA65_RS04760 at 988.739 kb on + strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.746 kb on - strand, within DZA65_RS04760 at 988.746 kb on - strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.784 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.802 kb on - strand, within DZA65_RS04760 at 988.814 kb on + strand, within DZA65_RS04760 at 988.815 kb on - strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.873 kb on + strand, within DZA65_RS04760 at 988.873 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.919 kb on + strand, within DZA65_RS04760 at 988.972 kb on + strand, within DZA65_RS04760 at 988.972 kb on + strand, within DZA65_RS04760 at 988.973 kb on - strand, within DZA65_RS04760 at 988.973 kb on - strand, within DZA65_RS04760 at 989.004 kb on + strand, within DZA65_RS04760 at 989.004 kb on + strand, within DZA65_RS04760 at 989.005 kb on - strand, within DZA65_RS04760 at 989.100 kb on + strand at 989.100 kb on + strand at 989.129 kb on + strand at 989.130 kb on - strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.155 kb on + strand at 989.156 kb on - strand at 989.177 kb on - strand at 989.202 kb on + strand at 989.256 kb on + strand at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.316 kb on - strand, within DZA65_RS04765 at 989.316 kb on - strand, within DZA65_RS04765 at 989.318 kb on - strand, within DZA65_RS04765 at 989.329 kb on + strand, within DZA65_RS04765 at 989.330 kb on - strand, within DZA65_RS04765 at 989.331 kb on + strand, within DZA65_RS04765 at 989.331 kb on + strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.334 kb on + strand, within DZA65_RS04765 at 989.335 kb on - strand, within DZA65_RS04765 at 989.335 kb on - strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.376 kb on - strand, within DZA65_RS04765 at 989.379 kb on + strand, within DZA65_RS04765 at 989.381 kb on + strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.401 kb on + strand, within DZA65_RS04765 at 989.419 kb on - strand, within DZA65_RS04765 at 989.477 kb on - strand, within DZA65_RS04765 at 989.580 kb on + strand, within DZA65_RS04765 at 989.584 kb on + strand, within DZA65_RS04765 at 989.624 kb on - strand, within DZA65_RS04765 at 989.722 kb on + strand, within DZA65_RS04765 at 989.725 kb on - strand, within DZA65_RS04765 at 989.732 kb on - strand, within DZA65_RS04765 at 989.734 kb on + strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.736 kb on + strand, within DZA65_RS04765 at 989.744 kb on - strand, within DZA65_RS04765 at 989.745 kb on + strand, within DZA65_RS04765 at 989.754 kb on + strand, within DZA65_RS04765 at 989.755 kb on - strand, within DZA65_RS04765 at 989.755 kb on - strand, within DZA65_RS04765 at 989.756 kb on + strand, within DZA65_RS04765 at 989.794 kb on - strand, within DZA65_RS04765 at 989.803 kb on - strand, within DZA65_RS04765 at 989.920 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.956 kb on - strand, within DZA65_RS04765 at 990.016 kb on - strand, within DZA65_RS04765 at 990.060 kb on - strand, within DZA65_RS04765 at 990.097 kb on - strand, within DZA65_RS04765 at 990.134 kb on + strand, within DZA65_RS04765 at 990.134 kb on + strand, within DZA65_RS04765 at 990.135 kb on - strand, within DZA65_RS04765
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 988,614 - -0.2 988,614 - +0.3 988,615 + +0.5 988,615 + +0.2 988,615 + -0.7 988,616 - -1.5 988,634 + DZA65_RS04760 0.12 +0.0 988,666 + DZA65_RS04760 0.18 -0.3 988,666 + DZA65_RS04760 0.18 +1.3 988,666 + DZA65_RS04760 0.18 -0.7 988,666 + DZA65_RS04760 0.18 +0.4 988,666 + DZA65_RS04760 0.18 +1.0 988,666 + DZA65_RS04760 0.18 -1.4 988,666 + DZA65_RS04760 0.18 +0.0 988,666 + DZA65_RS04760 0.18 -0.7 988,667 - DZA65_RS04760 0.18 -0.7 988,667 - DZA65_RS04760 0.18 -0.2 988,667 - DZA65_RS04760 0.18 +0.0 988,667 - DZA65_RS04760 0.18 +0.1 988,667 - DZA65_RS04760 0.18 +0.0 988,667 - DZA65_RS04760 0.18 -0.7 988,667 - DZA65_RS04760 0.18 +1.0 988,667 - DZA65_RS04760 0.18 -0.4 988,692 + DZA65_RS04760 0.22 -0.1 988,693 - DZA65_RS04760 0.23 +0.0 988,693 - DZA65_RS04760 0.23 +0.2 988,693 - DZA65_RS04760 0.23 -0.5 988,721 + DZA65_RS04760 0.27 +0.7 988,722 - DZA65_RS04760 0.28 +0.0 988,739 + DZA65_RS04760 0.31 -0.1 988,740 - DZA65_RS04760 0.31 +0.0 988,740 - DZA65_RS04760 0.31 +0.0 988,740 - DZA65_RS04760 0.31 -1.5 988,746 - DZA65_RS04760 0.32 -1.0 988,746 - DZA65_RS04760 0.32 -1.4 988,750 + DZA65_RS04760 0.32 -0.4 988,750 + DZA65_RS04760 0.32 -0.4 988,750 + DZA65_RS04760 0.32 -1.1 988,751 - DZA65_RS04760 0.33 -0.6 988,751 - DZA65_RS04760 0.33 -0.2 988,751 - DZA65_RS04760 0.33 +0.6 988,784 + DZA65_RS04760 0.38 -1.4 988,790 + DZA65_RS04760 0.39 +0.6 988,790 + DZA65_RS04760 0.39 +0.6 988,790 + DZA65_RS04760 0.39 -1.3 988,791 - DZA65_RS04760 0.40 -0.3 988,791 - DZA65_RS04760 0.40 +0.4 988,791 - DZA65_RS04760 0.40 +0.0 988,791 - DZA65_RS04760 0.40 +0.9 988,802 - DZA65_RS04760 0.41 -0.2 988,814 + DZA65_RS04760 0.44 +0.8 988,815 - DZA65_RS04760 0.44 -0.5 988,859 + DZA65_RS04760 0.51 -0.8 988,859 + DZA65_RS04760 0.51 -1.5 988,859 + DZA65_RS04760 0.51 -1.5 988,860 - DZA65_RS04760 0.52 -0.1 988,860 - DZA65_RS04760 0.52 -1.4 988,860 - DZA65_RS04760 0.52 -1.0 988,873 + DZA65_RS04760 0.54 +0.6 988,873 + DZA65_RS04760 0.54 +1.5 988,916 + DZA65_RS04760 0.61 +1.0 988,916 + DZA65_RS04760 0.61 +1.0 988,916 + DZA65_RS04760 0.61 -1.7 988,919 + DZA65_RS04760 0.62 -1.1 988,972 + DZA65_RS04760 0.71 -0.5 988,972 + DZA65_RS04760 0.71 -0.3 988,973 - DZA65_RS04760 0.71 -0.8 988,973 - DZA65_RS04760 0.71 -0.1 989,004 + DZA65_RS04760 0.77 +0.9 989,004 + DZA65_RS04760 0.77 -2.9 989,005 - DZA65_RS04760 0.77 -0.1 989,100 + -2.0 989,100 + +1.5 989,129 + -1.3 989,130 - +0.6 989,138 + +0.6 989,138 + +0.7 989,138 + -2.1 989,138 + -0.3 989,145 - +1.3 989,145 - +0.2 989,145 - -0.4 989,145 - -0.0 989,145 - -0.7 989,155 + +0.0 989,156 - -2.4 989,177 - -0.4 989,202 + +0.2 989,256 + -0.9 989,313 + DZA65_RS04765 0.13 -0.5 989,313 + DZA65_RS04765 0.13 -1.3 989,313 + DZA65_RS04765 0.13 -0.3 989,313 + DZA65_RS04765 0.13 -1.8 989,313 + DZA65_RS04765 0.13 -0.1 989,314 - DZA65_RS04765 0.13 -0.1 989,314 - DZA65_RS04765 0.13 -3.0 989,314 - DZA65_RS04765 0.13 +1.0 989,314 - DZA65_RS04765 0.13 -1.0 989,316 - DZA65_RS04765 0.13 +0.9 989,316 - DZA65_RS04765 0.13 +0.2 989,318 - DZA65_RS04765 0.13 -0.2 989,329 + DZA65_RS04765 0.14 -0.1 989,330 - DZA65_RS04765 0.14 -1.0 989,331 + DZA65_RS04765 0.14 -0.5 989,331 + DZA65_RS04765 0.14 -0.4 989,332 - DZA65_RS04765 0.14 +0.5 989,332 - DZA65_RS04765 0.14 -0.5 989,332 - DZA65_RS04765 0.14 -0.5 989,332 - DZA65_RS04765 0.14 -0.2 989,334 + DZA65_RS04765 0.14 +2.2 989,335 - DZA65_RS04765 0.14 -1.5 989,335 - DZA65_RS04765 0.14 -0.7 989,375 + DZA65_RS04765 0.17 -0.3 989,375 + DZA65_RS04765 0.17 +1.9 989,375 + DZA65_RS04765 0.17 -1.1 989,376 - DZA65_RS04765 0.17 +1.2 989,379 + DZA65_RS04765 0.17 +0.4 989,381 + DZA65_RS04765 0.18 -0.5 989,382 - DZA65_RS04765 0.18 -0.8 989,382 - DZA65_RS04765 0.18 -1.1 989,382 - DZA65_RS04765 0.18 -0.1 989,401 + DZA65_RS04765 0.19 -0.2 989,419 - DZA65_RS04765 0.20 +2.4 989,477 - DZA65_RS04765 0.25 -0.3 989,580 + DZA65_RS04765 0.32 -0.5 989,584 + DZA65_RS04765 0.33 +1.4 989,624 - DZA65_RS04765 0.36 -0.2 989,722 + DZA65_RS04765 0.43 -0.4 989,725 - DZA65_RS04765 0.43 +1.7 989,732 - DZA65_RS04765 0.44 +0.0 989,734 + DZA65_RS04765 0.44 +1.0 989,735 - DZA65_RS04765 0.44 -1.0 989,735 - DZA65_RS04765 0.44 +0.0 989,735 - DZA65_RS04765 0.44 +0.0 989,736 + DZA65_RS04765 0.44 +1.0 989,744 - DZA65_RS04765 0.45 -1.3 989,745 + DZA65_RS04765 0.45 +0.3 989,754 + DZA65_RS04765 0.45 -0.4 989,755 - DZA65_RS04765 0.45 +0.0 989,755 - DZA65_RS04765 0.45 +0.3 989,756 + DZA65_RS04765 0.45 +0.0 989,794 - DZA65_RS04765 0.48 +1.0 989,803 - DZA65_RS04765 0.49 +0.0 989,920 - DZA65_RS04765 0.58 +1.0 989,924 - DZA65_RS04765 0.58 +0.8 989,924 - DZA65_RS04765 0.58 +0.5 989,924 - DZA65_RS04765 0.58 +0.0 989,956 - DZA65_RS04765 0.60 -0.6 990,016 - DZA65_RS04765 0.65 -1.0 990,060 - DZA65_RS04765 0.68 -0.5 990,097 - DZA65_RS04765 0.71 -1.5 990,134 + DZA65_RS04765 0.73 -0.3 990,134 + DZA65_RS04765 0.73 -0.2 990,135 - DZA65_RS04765 0.73 +0.9
Or see this region's nucleotide sequence