Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02990 and DZA65_RS02995 are separated by 330 nucleotides DZA65_RS02995 and DZA65_RS03000 overlap by 2 nucleotides
DZA65_RS02990: DZA65_RS02990 - TerC family protein, at 637,462 to 638,415
_RS02990
DZA65_RS02995: DZA65_RS02995 - hypothetical protein, at 638,746 to 638,937
_RS02995
DZA65_RS03000: DZA65_RS03000 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 638,936 to 640,150
_RS03000
Position (kb) 638
639 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 637.753 kb on + strand, within DZA65_RS02990 at 637.933 kb on - strand, within DZA65_RS02990 at 637.982 kb on + strand, within DZA65_RS02990 at 637.982 kb on + strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 638.017 kb on - strand, within DZA65_RS02990 at 638.037 kb on + strand, within DZA65_RS02990 at 638.038 kb on - strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.067 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.168 kb on + strand, within DZA65_RS02990 at 638.169 kb on - strand, within DZA65_RS02990 at 638.169 kb on - strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.232 kb on - strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.258 kb on - strand, within DZA65_RS02990 at 638.316 kb on + strand, within DZA65_RS02990 at 638.317 kb on - strand, within DZA65_RS02990 at 638.317 kb on - strand, within DZA65_RS02990 at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.421 kb on + strand at 638.422 kb on - strand at 638.422 kb on - strand at 638.422 kb on - strand at 638.464 kb on + strand at 638.465 kb on - strand at 638.514 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.554 kb on + strand at 638.554 kb on + strand at 638.554 kb on + strand at 638.555 kb on - strand at 638.555 kb on - strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.571 kb on - strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.613 kb on + strand at 638.613 kb on + strand at 638.613 kb on + strand at 638.638 kb on + strand at 638.639 kb on - strand at 638.662 kb on + strand at 638.662 kb on + strand at 638.662 kb on + strand at 638.663 kb on - strand at 638.663 kb on - strand at 638.663 kb on - strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.676 kb on + strand at 638.704 kb on - strand at 638.704 kb on - strand at 638.706 kb on + strand at 638.707 kb on - strand at 638.707 kb on - strand at 638.707 kb on - strand at 638.725 kb on - strand at 638.734 kb on + strand at 638.735 kb on - strand at 638.744 kb on + strand at 638.744 kb on + strand at 638.744 kb on + strand at 638.745 kb on - strand at 638.747 kb on + strand at 638.747 kb on + strand at 638.747 kb on + strand at 638.748 kb on - strand at 638.748 kb on - strand at 638.748 kb on - strand at 638.755 kb on + strand at 638.755 kb on + strand at 638.756 kb on - strand at 638.756 kb on - strand at 638.756 kb on - strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.765 kb on - strand at 638.766 kb on + strand, within DZA65_RS02995 at 638.766 kb on + strand, within DZA65_RS02995 at 638.766 kb on + strand, within DZA65_RS02995 at 638.772 kb on + strand, within DZA65_RS02995 at 638.808 kb on + strand, within DZA65_RS02995 at 638.809 kb on - strand, within DZA65_RS02995 at 638.831 kb on + strand, within DZA65_RS02995 at 638.831 kb on + strand, within DZA65_RS02995 at 638.832 kb on - strand, within DZA65_RS02995 at 638.832 kb on - strand, within DZA65_RS02995 at 638.878 kb on + strand, within DZA65_RS02995 at 638.879 kb on - strand, within DZA65_RS02995 at 639.035 kb on + strand at 639.035 kb on + strand at 639.035 kb on + strand at 639.035 kb on + strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.123 kb on + strand, within DZA65_RS03000 at 639.158 kb on + strand, within DZA65_RS03000 at 639.158 kb on + strand, within DZA65_RS03000 at 639.159 kb on - strand, within DZA65_RS03000 at 639.185 kb on - strand, within DZA65_RS03000 at 639.204 kb on - strand, within DZA65_RS03000 at 639.377 kb on - strand, within DZA65_RS03000 at 639.377 kb on - strand, within DZA65_RS03000 at 639.427 kb on + strand, within DZA65_RS03000 at 639.427 kb on + strand, within DZA65_RS03000 at 639.611 kb on + strand, within DZA65_RS03000 at 639.611 kb on + strand, within DZA65_RS03000 at 639.612 kb on - strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.617 kb on - strand, within DZA65_RS03000 at 639.617 kb on - strand, within DZA65_RS03000 at 639.626 kb on + strand at 639.626 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.679 kb on - strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.854 kb on - strand, within DZA65_RS03000 at 639.854 kb on - strand, within DZA65_RS03000 at 639.928 kb on + strand, within DZA65_RS03000 at 639.929 kb on - strand, within DZA65_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 637,753 + DZA65_RS02990 0.31 -2.4 637,933 - DZA65_RS02990 0.49 -1.8 637,982 + DZA65_RS02990 0.55 +0.1 637,982 + DZA65_RS02990 0.55 +0.7 637,983 - DZA65_RS02990 0.55 -0.6 637,983 - DZA65_RS02990 0.55 -1.6 637,983 - DZA65_RS02990 0.55 +0.4 638,017 - DZA65_RS02990 0.58 -0.1 638,037 + DZA65_RS02990 0.60 +0.1 638,038 - DZA65_RS02990 0.60 -0.3 638,044 + DZA65_RS02990 0.61 -0.8 638,044 + DZA65_RS02990 0.61 -0.1 638,044 + DZA65_RS02990 0.61 -0.3 638,045 - DZA65_RS02990 0.61 +0.8 638,045 - DZA65_RS02990 0.61 -0.4 638,045 - DZA65_RS02990 0.61 +0.2 638,067 - DZA65_RS02990 0.63 +0.5 638,109 - DZA65_RS02990 0.68 +0.4 638,109 - DZA65_RS02990 0.68 -1.8 638,109 - DZA65_RS02990 0.68 +0.9 638,168 + DZA65_RS02990 0.74 -0.2 638,169 - DZA65_RS02990 0.74 -0.9 638,169 - DZA65_RS02990 0.74 -0.4 638,231 + DZA65_RS02990 0.81 +0.4 638,231 + DZA65_RS02990 0.81 -0.5 638,231 + DZA65_RS02990 0.81 -0.8 638,231 + DZA65_RS02990 0.81 -0.4 638,232 - DZA65_RS02990 0.81 +0.0 638,257 + DZA65_RS02990 0.83 -0.1 638,257 + DZA65_RS02990 0.83 +0.7 638,257 + DZA65_RS02990 0.83 -0.0 638,257 + DZA65_RS02990 0.83 +1.4 638,257 + DZA65_RS02990 0.83 +0.2 638,258 - DZA65_RS02990 0.83 -2.3 638,316 + DZA65_RS02990 0.90 +0.8 638,317 - DZA65_RS02990 0.90 -0.4 638,317 - DZA65_RS02990 0.90 -2.3 638,400 + +0.3 638,400 + -1.4 638,400 + +0.3 638,400 + -1.4 638,400 + -0.1 638,400 + -1.6 638,401 - -1.8 638,401 - -0.2 638,401 - +0.1 638,401 - +0.3 638,401 - -1.8 638,401 - -0.0 638,401 - -1.2 638,401 - +1.6 638,404 + -2.0 638,404 + -0.1 638,404 + -1.8 638,404 + -0.0 638,404 + +0.5 638,404 + -0.4 638,404 + -0.4 638,404 + -0.8 638,404 + +0.2 638,404 + +1.0 638,404 + -1.2 638,404 + -0.6 638,404 + -1.2 638,404 + -1.0 638,404 + +0.6 638,404 + +0.4 638,404 + +1.0 638,405 - +0.3 638,405 - -1.4 638,405 - -0.0 638,405 - +1.2 638,405 - +0.2 638,405 - -0.2 638,405 - -0.6 638,405 - -0.4 638,405 - -2.5 638,405 - -0.4 638,405 - +0.1 638,405 - +1.3 638,405 - +0.1 638,405 - +0.2 638,405 - -1.3 638,405 - +0.0 638,406 + -2.2 638,406 + +0.5 638,406 + +0.8 638,406 + +1.8 638,406 + -0.2 638,406 + -0.6 638,406 + +0.7 638,406 + -0.6 638,407 - +0.3 638,407 - +1.6 638,407 - -0.4 638,407 - -1.2 638,407 - +0.6 638,407 - -1.6 638,407 - +1.2 638,407 - -0.3 638,407 - +1.2 638,407 - +1.2 638,407 - +1.3 638,410 + +1.7 638,410 + -0.2 638,410 + -0.3 638,410 + -0.5 638,410 + +0.2 638,410 + +0.9 638,411 - +0.9 638,411 - -2.0 638,411 - -0.8 638,411 - +0.6 638,411 - -0.1 638,421 + -1.6 638,422 - +0.6 638,422 - +0.8 638,422 - -0.4 638,464 + -0.1 638,465 - +0.7 638,514 + -0.8 638,525 + -1.6 638,525 + -0.1 638,525 + +0.2 638,525 + -1.3 638,525 + -0.7 638,526 - -0.3 638,526 - +0.4 638,526 - -0.5 638,526 - +0.8 638,554 + -0.2 638,554 + +0.8 638,554 + +0.4 638,555 - +0.2 638,555 - +0.2 638,561 + -1.1 638,561 + -0.6 638,561 + -1.2 638,561 + +0.5 638,562 - -1.2 638,562 - -1.4 638,562 - +0.0 638,562 - -0.7 638,562 - +0.0 638,562 - +0.8 638,562 - -1.4 638,562 - -1.2 638,571 - +0.3 638,579 + -0.2 638,579 + +1.0 638,579 + +0.5 638,579 + +0.1 638,579 + +0.2 638,579 + +0.6 638,579 + +1.0 638,613 + -0.4 638,613 + -0.8 638,613 + -1.5 638,638 + -1.7 638,639 - -0.4 638,662 + -1.4 638,662 + +0.8 638,662 + +0.2 638,663 - -0.6 638,663 - +1.9 638,663 - -0.5 638,667 + -0.5 638,667 + +1.0 638,667 + -0.2 638,667 + +0.8 638,667 + -0.8 638,667 + +1.4 638,668 - +0.8 638,668 - +1.6 638,668 - +0.4 638,668 - +0.2 638,668 - -0.8 638,676 + -0.2 638,704 - -1.5 638,704 - -0.1 638,706 + +0.3 638,707 - -0.1 638,707 - +0.2 638,707 - -0.4 638,725 - +0.8 638,734 + -1.4 638,735 - -1.2 638,744 + -0.8 638,744 + -2.0 638,744 + -2.3 638,745 - +0.8 638,747 + -2.2 638,747 + +0.8 638,747 + -0.4 638,748 - -0.4 638,748 - -0.3 638,748 - -0.4 638,755 + +0.2 638,755 + -1.2 638,756 - +0.6 638,756 - -0.4 638,756 - +2.3 638,758 + +0.8 638,758 + +0.2 638,758 + -0.4 638,758 + -0.3 638,765 - -1.2 638,766 + DZA65_RS02995 0.10 -1.4 638,766 + DZA65_RS02995 0.10 +0.4 638,766 + DZA65_RS02995 0.10 +0.2 638,772 + DZA65_RS02995 0.14 +0.4 638,808 + DZA65_RS02995 0.32 -1.6 638,809 - DZA65_RS02995 0.33 -0.1 638,831 + DZA65_RS02995 0.44 +0.3 638,831 + DZA65_RS02995 0.44 -0.6 638,832 - DZA65_RS02995 0.45 -0.8 638,832 - DZA65_RS02995 0.45 -0.8 638,878 + DZA65_RS02995 0.69 -1.2 638,879 - DZA65_RS02995 0.69 -0.6 639,035 + -0.3 639,035 + -2.2 639,035 + -2.0 639,035 + -1.7 639,036 - -0.5 639,036 - +0.5 639,036 - -1.6 639,036 - -0.2 639,123 + DZA65_RS03000 0.15 +0.1 639,158 + DZA65_RS03000 0.18 +0.2 639,158 + DZA65_RS03000 0.18 -1.6 639,159 - DZA65_RS03000 0.18 +1.2 639,185 - DZA65_RS03000 0.20 -0.0 639,204 - DZA65_RS03000 0.22 +0.8 639,377 - DZA65_RS03000 0.36 +1.8 639,377 - DZA65_RS03000 0.36 +0.1 639,427 + DZA65_RS03000 0.40 -0.0 639,427 + DZA65_RS03000 0.40 -0.4 639,611 + DZA65_RS03000 0.56 -1.6 639,611 + DZA65_RS03000 0.56 -0.4 639,612 - DZA65_RS03000 0.56 -2.0 639,616 + DZA65_RS03000 0.56 -0.1 639,616 + DZA65_RS03000 0.56 -0.8 639,616 + DZA65_RS03000 0.56 -0.0 639,617 - DZA65_RS03000 0.56 -1.7 639,617 - DZA65_RS03000 0.56 +0.1 639,626 + -1.2 639,626 + DZA65_RS03000 0.57 -1.0 639,678 + DZA65_RS03000 0.61 +0.2 639,678 + DZA65_RS03000 0.61 +0.6 639,678 + DZA65_RS03000 0.61 -1.4 639,679 - DZA65_RS03000 0.61 +3.2 639,776 + DZA65_RS03000 0.69 +0.2 639,776 + DZA65_RS03000 0.69 +0.9 639,776 + DZA65_RS03000 0.69 +0.5 639,776 + DZA65_RS03000 0.69 +1.4 639,776 + DZA65_RS03000 0.69 -0.5 639,776 + DZA65_RS03000 0.69 -1.2 639,776 + DZA65_RS03000 0.69 +0.7 639,776 + DZA65_RS03000 0.69 -1.2 639,777 - DZA65_RS03000 0.69 +0.4 639,777 - DZA65_RS03000 0.69 +0.4 639,777 - DZA65_RS03000 0.69 -1.6 639,777 - DZA65_RS03000 0.69 +0.9 639,777 - DZA65_RS03000 0.69 -1.1 639,777 - DZA65_RS03000 0.69 -1.4 639,777 - DZA65_RS03000 0.69 +0.5 639,777 - DZA65_RS03000 0.69 -0.2 639,777 - DZA65_RS03000 0.69 +0.8 639,800 + DZA65_RS03000 0.71 -1.0 639,800 + DZA65_RS03000 0.71 -0.6 639,800 + DZA65_RS03000 0.71 -1.2 639,800 + DZA65_RS03000 0.71 -0.3 639,800 + DZA65_RS03000 0.71 -2.2 639,800 + DZA65_RS03000 0.71 +1.2 639,800 + DZA65_RS03000 0.71 -0.8 639,800 + DZA65_RS03000 0.71 -1.5 639,800 + DZA65_RS03000 0.71 +0.8 639,800 + DZA65_RS03000 0.71 -0.2 639,800 + DZA65_RS03000 0.71 -1.2 639,800 + DZA65_RS03000 0.71 +1.6 639,800 + DZA65_RS03000 0.71 -0.3 639,801 - DZA65_RS03000 0.71 -0.0 639,801 - DZA65_RS03000 0.71 -0.2 639,801 - DZA65_RS03000 0.71 -0.8 639,801 - DZA65_RS03000 0.71 -1.5 639,801 - DZA65_RS03000 0.71 -0.2 639,801 - DZA65_RS03000 0.71 +0.5 639,801 - DZA65_RS03000 0.71 -1.3 639,801 - DZA65_RS03000 0.71 +0.4 639,801 - DZA65_RS03000 0.71 -0.1 639,801 - DZA65_RS03000 0.71 +0.8 639,801 - DZA65_RS03000 0.71 +0.3 639,801 - DZA65_RS03000 0.71 -1.2 639,854 - DZA65_RS03000 0.76 -1.2 639,854 - DZA65_RS03000 0.76 +0.1 639,928 + DZA65_RS03000 0.82 -0.6 639,929 - DZA65_RS03000 0.82 -0.3
Or see this region's nucleotide sequence