Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22785 and DZA65_RS01960 are separated by 433 nucleotides DZA65_RS01960 and DZA65_RS01965 are separated by 113 nucleotides DZA65_RS01965 and DZA65_RS01970 are separated by 16 nucleotides
DZA65_RS22785: DZA65_RS22785 - hypothetical protein, at 431,367 to 431,870
_RS22785
DZA65_RS01960: DZA65_RS01960 - 2-iminobutanoate/2-iminopropanoate deaminase, at 432,304 to 432,690
_RS01960
DZA65_RS01965: DZA65_RS01965 - aspartate carbamoyltransferase regulatory subunit, at 432,804 to 433,268
_RS01965
DZA65_RS01970: DZA65_RS01970 - aspartate carbamoyltransferase, at 433,285 to 434,220
_RS01970
Position (kb) 432
433
434 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 431.928 kb on + strand at 431.928 kb on + strand at 431.929 kb on - strand at 431.929 kb on - strand at 431.931 kb on - strand at 431.938 kb on + strand at 432.007 kb on + strand at 432.008 kb on - strand at 432.022 kb on + strand at 432.045 kb on + strand at 432.072 kb on + strand at 432.073 kb on - strand at 432.077 kb on + strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.091 kb on + strand at 432.107 kb on - strand at 432.216 kb on + strand at 432.217 kb on - strand at 432.249 kb on - strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.419 kb on + strand, within DZA65_RS01960 at 432.419 kb on + strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.641 kb on + strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.678 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.732 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.851 kb on - strand, within DZA65_RS01965 at 432.851 kb on - strand, within DZA65_RS01965 at 432.939 kb on - strand, within DZA65_RS01965 at 432.989 kb on + strand, within DZA65_RS01965 at 432.989 kb on + strand, within DZA65_RS01965 at 432.990 kb on - strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.080 kb on - strand, within DZA65_RS01965 at 433.080 kb on - strand, within DZA65_RS01965 at 433.182 kb on + strand, within DZA65_RS01965 at 433.183 kb on - strand, within DZA65_RS01965 at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.248 kb on + strand at 433.249 kb on - strand at 433.253 kb on + strand at 433.253 kb on + strand at 433.254 kb on - strand at 433.254 kb on - strand at 433.254 kb on - strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.338 kb on - strand at 433.338 kb on - strand at 433.341 kb on + strand at 433.341 kb on + strand at 433.364 kb on + strand at 433.364 kb on + strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.367 kb on + strand at 433.367 kb on + strand at 433.374 kb on - strand at 433.476 kb on + strand, within DZA65_RS01970 at 433.477 kb on - strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.593 kb on - strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.660 kb on - strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.711 kb on + strand, within DZA65_RS01970 at 433.711 kb on + strand, within DZA65_RS01970 at 433.712 kb on - strand, within DZA65_RS01970 at 433.712 kb on - strand, within DZA65_RS01970 at 433.724 kb on + strand, within DZA65_RS01970 at 433.743 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.925 kb on + strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 433.926 kb on - strand, within DZA65_RS01970 at 434.202 kb on + strand at 434.202 kb on + strand at 434.202 kb on + strand at 434.202 kb on + strand at 434.202 kb on + strand at 434.202 kb on + strand at 434.203 kb on - strand at 434.203 kb on - strand at 434.203 kb on - strand at 434.203 kb on - strand at 434.203 kb on - strand at 434.203 kb on - strand at 434.204 kb on + strand at 434.204 kb on + strand at 434.204 kb on + strand at 434.205 kb on - strand at 434.205 kb on - strand at 434.206 kb on + strand at 434.206 kb on + strand at 434.207 kb on - strand at 434.207 kb on - strand at 434.207 kb on - strand at 434.226 kb on + strand at 434.227 kb on - strand at 434.227 kb on - strand at 434.261 kb on + strand at 434.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 431,928 + +1.3 431,928 + -1.0 431,929 - -0.3 431,929 - +0.8 431,931 - +0.1 431,938 + -0.1 432,007 + -0.8 432,008 - +0.9 432,022 + +0.7 432,045 + +0.4 432,072 + -3.1 432,073 - -1.1 432,077 + -1.1 432,078 - +0.7 432,078 - +0.3 432,078 - -0.8 432,091 + +0.6 432,107 - +0.1 432,216 + +1.0 432,217 - +1.7 432,249 - -0.3 432,301 + -0.2 432,301 + -1.0 432,301 + -0.4 432,302 - -1.3 432,302 - -0.2 432,302 - -0.2 432,302 - +0.3 432,305 + +0.7 432,305 + +0.2 432,305 + -1.1 432,305 + +0.1 432,305 + -0.4 432,305 + +0.6 432,305 + -1.2 432,305 + +0.2 432,305 + -2.4 432,305 + +0.2 432,305 + -0.3 432,306 - -0.3 432,306 - +1.8 432,306 - -1.3 432,306 - -1.1 432,306 - +0.4 432,306 - +0.9 432,306 - -0.2 432,419 + DZA65_RS01960 0.30 -0.6 432,419 + DZA65_RS01960 0.30 +0.6 432,420 - DZA65_RS01960 0.30 -1.5 432,420 - DZA65_RS01960 0.30 -0.2 432,641 + DZA65_RS01960 0.87 +0.9 432,642 - DZA65_RS01960 0.87 -0.2 432,642 - DZA65_RS01960 0.87 +0.2 432,678 + -0.1 432,704 + -0.6 432,704 + -0.6 432,704 + -0.6 432,704 + +1.3 432,705 - +0.2 432,705 - +0.7 432,705 - +2.8 432,705 - -1.4 432,705 - +2.3 432,705 - -0.6 432,732 + +2.1 432,850 + +1.3 432,850 + -2.2 432,850 + +0.3 432,850 + -0.5 432,851 - DZA65_RS01965 0.10 -2.3 432,851 - DZA65_RS01965 0.10 +0.5 432,939 - DZA65_RS01965 0.29 +0.9 432,989 + DZA65_RS01965 0.40 -0.4 432,989 + DZA65_RS01965 0.40 -2.8 432,990 - DZA65_RS01965 0.40 -0.9 433,003 + DZA65_RS01965 0.43 +0.4 433,003 + DZA65_RS01965 0.43 -0.4 433,003 + DZA65_RS01965 0.43 +0.3 433,004 - DZA65_RS01965 0.43 -1.7 433,004 - DZA65_RS01965 0.43 -0.1 433,004 - DZA65_RS01965 0.43 +0.5 433,039 + DZA65_RS01965 0.51 +0.1 433,039 + DZA65_RS01965 0.51 +0.0 433,039 + DZA65_RS01965 0.51 -0.3 433,039 + DZA65_RS01965 0.51 -0.1 433,039 + DZA65_RS01965 0.51 -2.3 433,040 - DZA65_RS01965 0.51 -0.3 433,040 - DZA65_RS01965 0.51 -0.2 433,040 - DZA65_RS01965 0.51 -0.2 433,040 - DZA65_RS01965 0.51 +0.5 433,080 - DZA65_RS01965 0.59 -1.5 433,080 - DZA65_RS01965 0.59 +0.2 433,182 + DZA65_RS01965 0.81 -0.2 433,183 - DZA65_RS01965 0.82 +0.7 433,242 + -0.7 433,242 + -1.1 433,242 + +1.3 433,242 + +1.3 433,242 + +0.3 433,242 + -0.6 433,242 + +0.0 433,243 - +0.5 433,243 - +1.7 433,243 - +0.9 433,243 - -0.4 433,243 - -1.0 433,243 - -2.1 433,243 - -0.3 433,243 - +0.9 433,243 - +1.0 433,248 + -0.8 433,249 - +0.1 433,253 + -1.2 433,253 + +1.3 433,254 - +0.9 433,254 - -0.2 433,254 - -0.9 433,273 + +0.9 433,273 + -0.3 433,273 + -0.3 433,273 + +0.3 433,273 + +1.3 433,273 + -0.3 433,273 + +0.7 433,273 + -0.7 433,273 + +0.0 433,273 + +1.3 433,274 - +0.9 433,274 - +0.8 433,274 - -0.5 433,274 - +0.6 433,274 - +0.3 433,274 - +0.0 433,338 - -4.8 433,338 - -2.3 433,341 + -1.4 433,341 + -1.1 433,364 + -2.1 433,364 + -2.1 433,365 - -1.9 433,365 - -2.3 433,365 - -0.3 433,365 - -2.2 433,365 - -1.1 433,365 - -2.2 433,365 - -0.2 433,365 - -1.3 433,365 - -1.3 433,367 + -3.2 433,367 + -2.8 433,374 - -1.2 433,476 + DZA65_RS01970 0.20 +0.4 433,477 - DZA65_RS01970 0.21 -1.7 433,499 + DZA65_RS01970 0.23 -1.5 433,499 + DZA65_RS01970 0.23 -0.3 433,499 + DZA65_RS01970 0.23 -3.0 433,499 + DZA65_RS01970 0.23 -0.2 433,499 + DZA65_RS01970 0.23 -1.3 433,499 + DZA65_RS01970 0.23 -1.9 433,541 + DZA65_RS01970 0.27 +0.3 433,541 + DZA65_RS01970 0.27 -1.5 433,541 + DZA65_RS01970 0.27 -2.6 433,541 + DZA65_RS01970 0.27 -1.5 433,541 + DZA65_RS01970 0.27 -2.2 433,541 + DZA65_RS01970 0.27 -3.8 433,541 + DZA65_RS01970 0.27 -1.2 433,541 + DZA65_RS01970 0.27 -3.8 433,542 - DZA65_RS01970 0.27 -1.3 433,542 - DZA65_RS01970 0.27 -0.5 433,542 - DZA65_RS01970 0.27 -1.5 433,542 - DZA65_RS01970 0.27 -3.3 433,592 + DZA65_RS01970 0.33 -0.5 433,592 + DZA65_RS01970 0.33 -2.1 433,592 + DZA65_RS01970 0.33 -1.7 433,593 - DZA65_RS01970 0.33 -2.2 433,628 + DZA65_RS01970 0.37 -2.3 433,628 + DZA65_RS01970 0.37 -1.7 433,628 + DZA65_RS01970 0.37 -2.2 433,628 + DZA65_RS01970 0.37 -0.3 433,628 + DZA65_RS01970 0.37 -2.9 433,628 + DZA65_RS01970 0.37 -1.5 433,628 + DZA65_RS01970 0.37 -2.1 433,628 + DZA65_RS01970 0.37 -2.0 433,629 - DZA65_RS01970 0.37 +1.3 433,629 - DZA65_RS01970 0.37 -3.8 433,629 - DZA65_RS01970 0.37 -1.2 433,629 - DZA65_RS01970 0.37 -1.5 433,629 - DZA65_RS01970 0.37 -2.7 433,629 - DZA65_RS01970 0.37 -0.9 433,659 + DZA65_RS01970 0.40 -1.5 433,659 + DZA65_RS01970 0.40 -2.3 433,659 + DZA65_RS01970 0.40 -2.1 433,660 - DZA65_RS01970 0.40 -1.1 433,664 + DZA65_RS01970 0.40 -0.7 433,664 + DZA65_RS01970 0.40 -1.7 433,664 + DZA65_RS01970 0.40 -1.5 433,664 + DZA65_RS01970 0.40 -2.9 433,664 + DZA65_RS01970 0.40 -2.1 433,664 + DZA65_RS01970 0.40 -2.7 433,664 + DZA65_RS01970 0.40 -3.1 433,664 + DZA65_RS01970 0.40 -2.1 433,665 - DZA65_RS01970 0.41 +0.4 433,665 - DZA65_RS01970 0.41 -0.5 433,665 - DZA65_RS01970 0.41 -2.6 433,665 - DZA65_RS01970 0.41 -4.5 433,665 - DZA65_RS01970 0.41 -3.2 433,711 + DZA65_RS01970 0.46 -1.7 433,711 + DZA65_RS01970 0.46 -1.9 433,712 - DZA65_RS01970 0.46 -1.7 433,712 - DZA65_RS01970 0.46 -4.3 433,724 + DZA65_RS01970 0.47 -2.9 433,743 + DZA65_RS01970 0.49 -2.1 433,925 + DZA65_RS01970 0.68 -1.3 433,925 + DZA65_RS01970 0.68 -1.8 433,925 + DZA65_RS01970 0.68 -1.3 433,925 + DZA65_RS01970 0.68 -1.9 433,925 + DZA65_RS01970 0.68 -2.8 433,925 + DZA65_RS01970 0.68 -0.7 433,925 + DZA65_RS01970 0.68 -0.3 433,925 + DZA65_RS01970 0.68 -1.7 433,925 + DZA65_RS01970 0.68 -2.2 433,925 + DZA65_RS01970 0.68 -0.7 433,925 + DZA65_RS01970 0.68 -0.2 433,925 + DZA65_RS01970 0.68 +0.7 433,925 + DZA65_RS01970 0.68 -2.7 433,925 + DZA65_RS01970 0.68 +0.9 433,925 + DZA65_RS01970 0.68 -3.6 433,925 + DZA65_RS01970 0.68 -0.1 433,926 - DZA65_RS01970 0.68 -0.9 433,926 - DZA65_RS01970 0.68 -1.9 433,926 - DZA65_RS01970 0.68 -2.4 433,926 - DZA65_RS01970 0.68 -1.5 433,926 - DZA65_RS01970 0.68 -2.1 433,926 - DZA65_RS01970 0.68 -0.3 433,926 - DZA65_RS01970 0.68 -0.5 433,926 - DZA65_RS01970 0.68 -0.5 433,926 - DZA65_RS01970 0.68 -2.9 433,926 - -0.7 433,926 - DZA65_RS01970 0.68 -1.9 433,926 - DZA65_RS01970 0.68 -2.3 433,926 - DZA65_RS01970 0.68 -0.3 433,926 - DZA65_RS01970 0.68 -0.3 433,926 - DZA65_RS01970 0.68 -1.0 433,926 - DZA65_RS01970 0.68 -2.6 434,202 + -1.2 434,202 + -1.1 434,202 + -2.3 434,202 + -0.9 434,202 + -3.1 434,202 + -0.3 434,203 - -1.5 434,203 - -1.7 434,203 - -2.5 434,203 - -1.9 434,203 - -2.3 434,203 - -2.1 434,204 + -0.7 434,204 + -2.1 434,204 + -2.3 434,205 - -2.2 434,205 - -2.9 434,206 + -1.5 434,206 + -2.3 434,207 - -0.9 434,207 - -1.7 434,207 - -3.5 434,226 + -2.1 434,227 - -1.6 434,227 - -1.7 434,261 + -0.9 434,261 + -1.3
Or see this region's nucleotide sequence