Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00025

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00020 and DZA65_RS00025 are separated by 76 nucleotidesDZA65_RS00025 and DZA65_RS00030 are separated by 193 nucleotidesDZA65_RS00030 and DZA65_RS00035 overlap by 4 nucleotides DZA65_RS00020: DZA65_RS00020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,694 to 6,105 _RS00020 DZA65_RS00025: DZA65_RS00025 - MFS transporter, at 6,182 to 7,366 _RS00025 DZA65_RS00030: DZA65_RS00030 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 7,560 to 8,312 _RS00030 DZA65_RS00035: DZA65_RS00035 - oligopeptidase A, at 8,309 to 10,351 _RS00035 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 6.094 kb on - strandat 6.168 kb on - strandat 6.213 kb on + strandat 6.213 kb on + strandat 6.213 kb on + strandat 6.213 kb on + strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.214 kb on - strandat 6.215 kb on + strandat 6.215 kb on + strandat 6.215 kb on + strandat 6.215 kb on + strandat 6.215 kb on + strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.216 kb on - strandat 6.343 kb on + strand, within DZA65_RS00025at 6.343 kb on + strand, within DZA65_RS00025at 6.434 kb on - strand, within DZA65_RS00025at 6.490 kb on + strand, within DZA65_RS00025at 6.490 kb on + strand, within DZA65_RS00025at 6.490 kb on + strand, within DZA65_RS00025at 6.491 kb on - strand, within DZA65_RS00025at 6.491 kb on - strand, within DZA65_RS00025at 6.491 kb on - strand, within DZA65_RS00025at 6.491 kb on - strand, within DZA65_RS00025at 6.494 kb on + strand, within DZA65_RS00025at 6.495 kb on - strand, within DZA65_RS00025at 6.610 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strandat 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.758 kb on - strand, within DZA65_RS00025at 6.758 kb on - strand, within DZA65_RS00025at 6.761 kb on + strand, within DZA65_RS00025at 6.762 kb on - strand, within DZA65_RS00025at 6.872 kb on + strand, within DZA65_RS00025at 6.872 kb on + strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.958 kb on + strand, within DZA65_RS00025at 6.958 kb on + strand, within DZA65_RS00025at 6.959 kb on - strand, within DZA65_RS00025at 7.008 kb on - strand, within DZA65_RS00025at 7.017 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.035 kb on - strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.090 kb on + strand, within DZA65_RS00025at 7.091 kb on - strand, within DZA65_RS00025at 7.140 kb on - strand, within DZA65_RS00025at 7.245 kb on + strand, within DZA65_RS00025at 7.245 kb on + strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.270 kb on + strandat 7.270 kb on + strandat 7.271 kb on - strandat 7.271 kb on - strandat 7.371 kb on - strandat 7.384 kb on - strandat 7.384 kb on - strandat 7.414 kb on + strandat 7.414 kb on + strandat 7.415 kb on - strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.418 kb on - strandat 7.418 kb on - strandat 7.424 kb on - strandat 7.428 kb on + strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.535 kb on + strandat 7.536 kb on - strandat 7.626 kb on + strandat 7.648 kb on + strand, within DZA65_RS00030at 7.807 kb on + strand, within DZA65_RS00030at 7.807 kb on + strand, within DZA65_RS00030at 7.808 kb on - strand, within DZA65_RS00030at 7.829 kb on + strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.839 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.864 kb on - strand, within DZA65_RS00030at 7.864 kb on - strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.051 kb on - strand, within DZA65_RS00030at 8.060 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.177 kb on + strand, within DZA65_RS00030at 8.325 kb on + strandat 8.325 kb on + strandat 8.325 kb on + strandat 8.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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6,094 - -0.7
6,168 - -0.2
6,213 + -1.0
6,213 + +0.3
6,213 + +0.2
6,213 + +1.8
6,214 - +1.7
6,214 - -1.2
6,214 - -0.5
6,214 - +1.6
6,214 - +0.8
6,214 - +1.6
6,214 - +2.6
6,214 - +0.2
6,214 - +0.3
6,214 - +0.9
6,215 + +0.8
6,215 + -0.0
6,215 + +0.8
6,215 + +1.0
6,215 + -1.2
6,216 - -1.2
6,216 - +0.3
6,216 - -1.7
6,216 - +1.0
6,216 - -0.6
6,216 - -0.7
6,216 - +1.3
6,216 - +0.0
6,343 + DZA65_RS00025 0.14 -0.2
6,343 + DZA65_RS00025 0.14 -1.0
6,434 - DZA65_RS00025 0.21 -0.3
6,490 + DZA65_RS00025 0.26 -0.1
6,490 + DZA65_RS00025 0.26 -0.4
6,490 + DZA65_RS00025 0.26 -0.2
6,491 - DZA65_RS00025 0.26 -0.5
6,491 - DZA65_RS00025 0.26 -0.7
6,491 - DZA65_RS00025 0.26 -0.4
6,491 - DZA65_RS00025 0.26 -0.2
6,494 + DZA65_RS00025 0.26 -2.1
6,495 - DZA65_RS00025 0.26 +0.3
6,610 + DZA65_RS00025 0.36 +1.3
6,703 + DZA65_RS00025 0.44 +0.3
6,703 + DZA65_RS00025 0.44 -0.7
6,703 + DZA65_RS00025 0.44 +0.9
6,704 - DZA65_RS00025 0.44 -0.5
6,704 - DZA65_RS00025 0.44 +0.0
6,704 - +0.0
6,704 - DZA65_RS00025 0.44 +0.1
6,704 - DZA65_RS00025 0.44 +0.5
6,724 + DZA65_RS00025 0.46 +0.9
6,724 + DZA65_RS00025 0.46 +1.2
6,724 + DZA65_RS00025 0.46 -0.4
6,724 + DZA65_RS00025 0.46 -0.0
6,724 + DZA65_RS00025 0.46 -0.6
6,725 - DZA65_RS00025 0.46 +0.3
6,725 - DZA65_RS00025 0.46 -0.2
6,725 - DZA65_RS00025 0.46 -1.7
6,725 - DZA65_RS00025 0.46 +0.7
6,757 + DZA65_RS00025 0.49 +0.5
6,757 + DZA65_RS00025 0.49 -0.0
6,757 + DZA65_RS00025 0.49 -1.8
6,758 - DZA65_RS00025 0.49 +1.9
6,758 - DZA65_RS00025 0.49 -0.1
6,761 + DZA65_RS00025 0.49 -0.7
6,762 - DZA65_RS00025 0.49 -0.4
6,872 + DZA65_RS00025 0.58 -1.6
6,872 + DZA65_RS00025 0.58 +0.1
6,873 - DZA65_RS00025 0.58 +1.0
6,873 - DZA65_RS00025 0.58 -0.5
6,873 - DZA65_RS00025 0.58 +1.3
6,958 + DZA65_RS00025 0.65 -0.8
6,958 + DZA65_RS00025 0.65 -0.9
6,959 - DZA65_RS00025 0.66 -0.9
7,008 - DZA65_RS00025 0.70 -0.5
7,017 + DZA65_RS00025 0.70 -0.6
7,032 + DZA65_RS00025 0.72 -1.0
7,032 + DZA65_RS00025 0.72 +2.2
7,032 + DZA65_RS00025 0.72 -1.8
7,033 - DZA65_RS00025 0.72 -1.1
7,033 - DZA65_RS00025 0.72 +0.7
7,033 - DZA65_RS00025 0.72 +0.5
7,033 - DZA65_RS00025 0.72 -0.8
7,033 - DZA65_RS00025 0.72 +0.3
7,035 - DZA65_RS00025 0.72 -0.1
7,083 + DZA65_RS00025 0.76 -0.9
7,083 + DZA65_RS00025 0.76 -0.5
7,083 + DZA65_RS00025 0.76 +0.3
7,083 + DZA65_RS00025 0.76 -0.5
7,083 + DZA65_RS00025 0.76 -0.6
7,083 + DZA65_RS00025 0.76 +0.5
7,083 + DZA65_RS00025 0.76 -1.0
7,084 - DZA65_RS00025 0.76 +0.1
7,084 - DZA65_RS00025 0.76 +0.3
7,084 - DZA65_RS00025 0.76 -0.7
7,090 + DZA65_RS00025 0.77 +0.7
7,091 - DZA65_RS00025 0.77 +1.3
7,140 - DZA65_RS00025 0.81 -1.9
7,245 + DZA65_RS00025 0.90 -1.2
7,245 + DZA65_RS00025 0.90 +0.6
7,246 - DZA65_RS00025 0.90 -0.9
7,246 - DZA65_RS00025 0.90 -0.7
7,246 - DZA65_RS00025 0.90 -0.7
7,246 - DZA65_RS00025 0.90 -0.4
7,270 + +1.3
7,270 + +0.3
7,271 - +0.2
7,271 - -1.0
7,371 - +0.8
7,384 - +0.7
7,384 - +2.1
7,414 + +1.3
7,414 + -1.2
7,415 - +1.3
7,417 + -0.9
7,417 + -1.0
7,417 + +1.2
7,417 + -1.2
7,418 - -2.2
7,418 - +0.0
7,424 - +1.0
7,428 + -1.6
7,429 - +0.3
7,429 - -0.5
7,429 - -0.7
7,429 - -0.3
7,535 + -1.8
7,536 - +1.3
7,626 + -1.1
7,648 + DZA65_RS00030 0.12 +0.7
7,807 + DZA65_RS00030 0.33 +0.1
7,807 + DZA65_RS00030 0.33 -1.0
7,808 - DZA65_RS00030 0.33 -1.2
7,829 + DZA65_RS00030 0.36 +0.5
7,830 - DZA65_RS00030 0.36 -0.2
7,830 - DZA65_RS00030 0.36 +1.9
7,830 - DZA65_RS00030 0.36 +0.1
7,839 + DZA65_RS00030 0.37 -0.1
7,863 + DZA65_RS00030 0.40 +0.6
7,863 + DZA65_RS00030 0.40 +0.5
7,863 + DZA65_RS00030 0.40 -2.6
7,864 - DZA65_RS00030 0.40 +1.1
7,864 - DZA65_RS00030 0.40 +0.3
8,050 + DZA65_RS00030 0.65 -1.7
8,050 + DZA65_RS00030 0.65 -0.8
8,050 + DZA65_RS00030 0.65 +1.3
8,051 - DZA65_RS00030 0.65 +0.5
8,060 + DZA65_RS00030 0.66 -1.1
8,063 + DZA65_RS00030 0.67 +0.6
8,063 + DZA65_RS00030 0.67 +0.5
8,063 + DZA65_RS00030 0.67 +0.3
8,177 + DZA65_RS00030 0.82 +0.2
8,325 + -0.5
8,325 + -0.2
8,325 + +1.1
8,326 - +0.5

Or see this region's nucleotide sequence