Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22420

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS22415 and DZA65_RS22420 are separated by 221 nucleotidesDZA65_RS22420 and DZA65_RS22425 are separated by 229 nucleotides DZA65_RS22415: DZA65_RS22415 - right-handed parallel beta-helix repeat-containing protein, at 4,847,282 to 4,849,486 _RS22415 DZA65_RS22420: DZA65_RS22420 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 4,849,708 to 4,851,078 _RS22420 DZA65_RS22425: DZA65_RS22425 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 4,851,308 to 4,853,143 _RS22425 Position (kb) 4849 4850 4851 4852Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.708 kb on + strand, within DZA65_RS22415at 4848.709 kb on - strand, within DZA65_RS22415at 4848.709 kb on - strand, within DZA65_RS22415at 4848.709 kb on - strand, within DZA65_RS22415at 4848.709 kb on - strandat 4848.709 kb on - strand, within DZA65_RS22415at 4848.789 kb on + strand, within DZA65_RS22415at 4848.790 kb on - strand, within DZA65_RS22415at 4848.870 kb on + strand, within DZA65_RS22415at 4848.871 kb on - strand, within DZA65_RS22415at 4848.871 kb on - strand, within DZA65_RS22415at 4848.968 kb on - strand, within DZA65_RS22415at 4848.968 kb on - strand, within DZA65_RS22415at 4849.023 kb on + strand, within DZA65_RS22415at 4849.024 kb on - strand, within DZA65_RS22415at 4849.210 kb on + strand, within DZA65_RS22415at 4849.210 kb on + strand, within DZA65_RS22415at 4849.211 kb on - strand, within DZA65_RS22415at 4849.211 kb on - strand, within DZA65_RS22415at 4849.211 kb on - strand, within DZA65_RS22415at 4849.244 kb on - strand, within DZA65_RS22415at 4849.244 kb on - strand, within DZA65_RS22415at 4849.274 kb on + strandat 4849.274 kb on + strandat 4849.275 kb on - strandat 4849.447 kb on + strandat 4849.447 kb on + strandat 4849.448 kb on - strandat 4849.460 kb on + strandat 4849.460 kb on + strandat 4849.460 kb on + strandat 4849.461 kb on - strandat 4849.461 kb on - strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.479 kb on + strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.480 kb on - strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.501 kb on + strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.502 kb on - strandat 4849.523 kb on + strandat 4849.523 kb on + strandat 4849.523 kb on + strandat 4849.523 kb on + strandat 4849.523 kb on + strandat 4849.523 kb on + strandat 4849.524 kb on - strandat 4849.524 kb on - strandat 4849.554 kb on + strandat 4849.570 kb on + strandat 4849.607 kb on - strandat 4849.627 kb on + strandat 4849.627 kb on + strandat 4849.627 kb on + strandat 4849.627 kb on + strandat 4849.627 kb on + strandat 4849.627 kb on + strandat 4849.628 kb on - strandat 4849.628 kb on - strandat 4849.628 kb on - strandat 4849.628 kb on - strandat 4849.628 kb on - strandat 4849.630 kb on + strandat 4849.630 kb on + strandat 4849.630 kb on + strandat 4849.631 kb on - strandat 4849.631 kb on - strandat 4849.631 kb on - strandat 4849.652 kb on + strandat 4851.076 kb on + strandat 4851.077 kb on - strandat 4851.082 kb on + strandat 4851.083 kb on - strandat 4851.140 kb on + strandat 4851.140 kb on + strandat 4851.141 kb on - strandat 4851.141 kb on - strandat 4851.154 kb on + strandat 4851.154 kb on + strandat 4851.154 kb on + strandat 4851.154 kb on + strandat 4851.154 kb on + strandat 4851.154 kb on + strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.155 kb on - strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.201 kb on + strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.202 kb on - strandat 4851.204 kb on + strandat 4851.205 kb on - strandat 4851.218 kb on - strandat 4851.250 kb on + strandat 4851.250 kb on + strandat 4851.250 kb on + strandat 4851.260 kb on + strandat 4851.260 kb on + strandat 4851.260 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.282 kb on + strandat 4851.283 kb on - strandat 4851.283 kb on - strandat 4851.283 kb on - strandat 4851.283 kb on - strandat 4851.283 kb on - strandat 4851.293 kb on + strandat 4851.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,848,708 + DZA65_RS22415 0.65 +0.5
4,848,708 + DZA65_RS22415 0.65 -1.5
4,848,708 + DZA65_RS22415 0.65 +0.4
4,848,708 + DZA65_RS22415 0.65 -1.1
4,848,708 + DZA65_RS22415 0.65 +1.1
4,848,708 + DZA65_RS22415 0.65 +0.8
4,848,708 + DZA65_RS22415 0.65 +0.1
4,848,708 + DZA65_RS22415 0.65 +1.1
4,848,708 + DZA65_RS22415 0.65 -0.1
4,848,708 + DZA65_RS22415 0.65 +0.7
4,848,709 - DZA65_RS22415 0.65 -0.9
4,848,709 - DZA65_RS22415 0.65 +0.2
4,848,709 - DZA65_RS22415 0.65 -0.5
4,848,709 - +0.1
4,848,709 - DZA65_RS22415 0.65 +0.5
4,848,789 + DZA65_RS22415 0.68 +0.4
4,848,790 - DZA65_RS22415 0.68 -0.5
4,848,870 + DZA65_RS22415 0.72 -0.5
4,848,871 - DZA65_RS22415 0.72 +0.7
4,848,871 - DZA65_RS22415 0.72 +0.1
4,848,968 - DZA65_RS22415 0.76 -0.6
4,848,968 - DZA65_RS22415 0.76 -0.6
4,849,023 + DZA65_RS22415 0.79 +0.9
4,849,024 - DZA65_RS22415 0.79 -1.5
4,849,210 + DZA65_RS22415 0.87 -0.5
4,849,210 + DZA65_RS22415 0.87 +0.1
4,849,211 - DZA65_RS22415 0.87 +0.7
4,849,211 - DZA65_RS22415 0.87 +1.4
4,849,211 - DZA65_RS22415 0.87 -0.2
4,849,244 - DZA65_RS22415 0.89 +1.8
4,849,244 - DZA65_RS22415 0.89 +0.3
4,849,274 + -2.1
4,849,274 + -0.5
4,849,275 - +1.3
4,849,447 + +1.1
4,849,447 + +1.7
4,849,448 - +0.3
4,849,460 + -1.6
4,849,460 + +0.7
4,849,460 + +0.8
4,849,461 - +1.1
4,849,461 - +0.2
4,849,479 + +1.1
4,849,479 + +1.4
4,849,479 + +1.0
4,849,479 + -0.3
4,849,479 + -1.0
4,849,479 + -0.9
4,849,479 + +1.9
4,849,479 + +1.6
4,849,479 + +1.1
4,849,479 + -0.0
4,849,479 + +0.4
4,849,479 + -1.1
4,849,479 + -1.1
4,849,480 - -0.0
4,849,480 - +0.5
4,849,480 - -0.1
4,849,480 - -0.0
4,849,480 - -0.5
4,849,480 - +0.2
4,849,480 - -0.4
4,849,480 - +0.1
4,849,480 - -0.5
4,849,480 - +2.1
4,849,480 - +0.1
4,849,480 - +0.7
4,849,480 - -0.2
4,849,480 - +1.8
4,849,480 - +0.4
4,849,480 - -0.9
4,849,480 - +0.3
4,849,480 - +1.1
4,849,480 - +0.3
4,849,501 + +0.1
4,849,501 + +0.2
4,849,501 + +0.5
4,849,501 + -1.1
4,849,501 + +0.3
4,849,501 + -0.1
4,849,501 + +0.5
4,849,501 + -1.9
4,849,502 - +0.5
4,849,502 - +0.5
4,849,502 - +0.5
4,849,502 - -0.5
4,849,502 - +0.2
4,849,502 - -0.5
4,849,502 - +0.1
4,849,502 - -0.2
4,849,502 - -1.5
4,849,502 - +1.4
4,849,502 - -0.1
4,849,502 - -0.7
4,849,502 - -1.2
4,849,502 - -0.9
4,849,502 - -0.8
4,849,502 - +0.2
4,849,502 - +0.9
4,849,502 - -1.1
4,849,502 - -1.5
4,849,502 - +1.1
4,849,523 + +0.4
4,849,523 + -0.5
4,849,523 + -0.4
4,849,523 + +3.3
4,849,523 + -0.1
4,849,523 + -0.1
4,849,524 - -1.0
4,849,524 - -0.5
4,849,554 + +0.8
4,849,570 + -2.2
4,849,607 - -0.5
4,849,627 + +0.3
4,849,627 + -1.1
4,849,627 + -0.9
4,849,627 + -0.2
4,849,627 + +0.9
4,849,627 + -0.6
4,849,628 - -0.0
4,849,628 - +0.3
4,849,628 - +0.7
4,849,628 - -0.3
4,849,628 - +0.5
4,849,630 + +1.1
4,849,630 + +0.1
4,849,630 + -1.9
4,849,631 - +1.3
4,849,631 - -0.2
4,849,631 - -0.1
4,849,652 + -0.7
4,851,076 + +1.1
4,851,077 - +1.4
4,851,082 + +0.1
4,851,083 - -0.6
4,851,140 + +0.1
4,851,140 + +0.2
4,851,141 - +0.4
4,851,141 - -0.3
4,851,154 + +1.1
4,851,154 + +0.9
4,851,154 + -1.4
4,851,154 + +0.4
4,851,154 + +0.1
4,851,154 + -1.0
4,851,155 - -0.4
4,851,155 - -1.3
4,851,155 - -0.1
4,851,155 - -0.1
4,851,155 - -0.5
4,851,155 - +1.1
4,851,155 - -0.1
4,851,155 - -0.3
4,851,201 + +0.0
4,851,201 + +0.7
4,851,201 + -1.1
4,851,201 + +0.2
4,851,201 + +0.0
4,851,201 + +1.2
4,851,201 + -1.5
4,851,201 + +0.7
4,851,202 - -0.5
4,851,202 - +0.3
4,851,202 - +0.8
4,851,202 - +0.1
4,851,202 - -0.6
4,851,202 - +0.1
4,851,202 - +0.6
4,851,202 - +0.2
4,851,204 + -1.2
4,851,205 - +2.0
4,851,218 - +0.8
4,851,250 + -1.7
4,851,250 + -1.5
4,851,250 + +0.1
4,851,260 + +2.7
4,851,260 + +0.2
4,851,260 + -0.1
4,851,282 + -1.7
4,851,282 + +0.4
4,851,282 + -0.7
4,851,282 + -0.5
4,851,282 + -0.2
4,851,282 + +0.5
4,851,282 + -0.2
4,851,282 + -1.0
4,851,282 + +0.1
4,851,282 + -1.5
4,851,282 + +0.7
4,851,282 + +0.7
4,851,282 + +1.3
4,851,282 + -0.6
4,851,282 + +0.1
4,851,282 + -1.2
4,851,282 + +1.1
4,851,282 + +1.8
4,851,282 + -1.7
4,851,282 + -0.5
4,851,282 + -0.8
4,851,282 + +0.1
4,851,283 - +1.1
4,851,283 - -1.7
4,851,283 - +1.1
4,851,283 - -0.3
4,851,283 - -1.1
4,851,293 + -2.5
4,851,293 + -2.5

Or see this region's nucleotide sequence