Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21855

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
				remove
4,721,529	+	DZA65_RS21850	0.65	-0.1
4,721,559	+	DZA65_RS21850	0.68	+0.4
4,721,559	+	DZA65_RS21850	0.68	-1.2
4,721,559	+	DZA65_RS21850	0.68	-1.3
4,721,559	+	DZA65_RS21850	0.68	+0.6
4,721,559	+	DZA65_RS21850	0.68	-0.7
4,721,560	-	DZA65_RS21850	0.68	-0.5
4,721,560	-	DZA65_RS21850	0.68	-0.2
4,721,560	-	DZA65_RS21850	0.68	+1.0
4,721,560	-	DZA65_RS21850	0.68	-0.5
4,721,560	-	DZA65_RS21850	0.68	-2.5
4,721,560	-	DZA65_RS21850	0.68	+0.9
4,721,618	+	DZA65_RS21850	0.72	+1.1
4,721,619	-	DZA65_RS21850	0.72	+0.4
4,721,721	+	DZA65_RS21850	0.80	+0.1
4,721,721	+	DZA65_RS21850	0.80	+1.3
4,721,722	-	DZA65_RS21850	0.80	-1.2
4,721,728	+	DZA65_RS21850	0.81	+0.2
4,721,728	+	DZA65_RS21850	0.81	-0.1
4,721,728	+	DZA65_RS21850	0.81	+0.4
4,721,729	-	DZA65_RS21850	0.81	+0.3
4,721,729	-	DZA65_RS21850	0.81	-0.2
4,721,729	-	DZA65_RS21850	0.81	-0.0
4,721,739	-	DZA65_RS21850	0.82	-0.5
4,721,739	-	DZA65_RS21850	0.82	-0.2
4,721,739	-	DZA65_RS21850	0.82	-1.3
4,721,739	-	DZA65_RS21850	0.82	+0.6
4,721,739	-	DZA65_RS21850	0.82	+0.5
4,721,811	+	DZA65_RS21850	0.87	+0.1
4,721,811	+	DZA65_RS21850	0.87	-0.0
4,721,898	-			-0.5
4,721,925	+			+1.0
4,721,928	+			+0.6
4,721,928	+			-0.0
4,721,932	+			-2.1
4,721,933	-			-0.0
4,721,933	-			-0.1
4,721,933	-			+0.4
4,721,976	+			-2.1
4,721,977	-			+0.9
4,722,053	+			+2.1
4,722,076	+			-0.1
4,722,083	-			-0.1
4,722,083	-			-0.7
4,722,090	+			-1.0
4,722,090	+			-0.6
4,722,227	+			-0.2
4,722,274	-			+1.1
4,722,305	+			+0.4
4,722,305	+			+0.8
4,722,306	-			-0.4
4,722,306	-			+0.1
4,722,307	+			-0.0
4,722,319	+			-0.2
4,722,319	+			+0.2
4,722,361	+			-2.1
4,722,362	-			-2.1
4,722,379	-			+0.2
4,722,382	+			-0.4
4,722,423	+			+2.3
4,722,424	-			+1.0
4,722,424	-			+0.0
4,722,424	-			-0.7
4,722,426	+			-0.2
4,722,426	+			-1.7
4,722,426	+			-1.5
4,722,426	+			-2.4
4,722,426	+			-0.9
4,722,427	-			+0.1
4,722,427	-			+1.4
4,722,427	-			+0.4
4,722,427	-			+1.0
4,722,427	-			+0.1
4,722,427	-			-2.3
4,722,511	+	DZA65_RS21855	0.13	-0.1
4,722,511	+	DZA65_RS21855	0.13	+0.1
4,722,511	+	DZA65_RS21855	0.13	-2.1
4,722,511	+	DZA65_RS21855	0.13	-0.6
4,722,512	-	DZA65_RS21855	0.14	-0.1
4,722,512	-	DZA65_RS21855	0.14	+0.9
4,722,512	-	DZA65_RS21855	0.14	-1.7
4,722,516	+	DZA65_RS21855	0.14	-0.3
4,722,516	+	DZA65_RS21855	0.14	+0.9
4,722,516	+	DZA65_RS21855	0.14	+1.0
4,722,516	+	DZA65_RS21855	0.14	-0.5
4,722,516	+	DZA65_RS21855	0.14	+0.1
4,722,516	+	DZA65_RS21855	0.14	-0.1
4,722,517	-	DZA65_RS21855	0.14	-0.3
4,722,517	-	DZA65_RS21855	0.14	+0.3
4,722,517	-	DZA65_RS21855	0.14	-0.1
4,722,517	-	DZA65_RS21855	0.14	+0.4
4,722,517	-	DZA65_RS21855	0.14	+0.1
4,722,577	+	DZA65_RS21855	0.20	-1.1
4,722,577	+	DZA65_RS21855	0.20	-0.2
4,722,577	+	DZA65_RS21855	0.20	-1.5
4,722,578	-	DZA65_RS21855	0.20	-0.9
4,722,578	-	DZA65_RS21855	0.20	-2.2
4,722,578	-	DZA65_RS21855	0.20	+0.1
4,722,578	-	DZA65_RS21855	0.20	-1.1
4,722,578	-	DZA65_RS21855	0.20	+0.4
4,722,578	-	DZA65_RS21855	0.20	+0.0
4,722,585	+	DZA65_RS21855	0.21	-0.4
4,722,585	+	DZA65_RS21855	0.21	-0.2
4,722,586	-	DZA65_RS21855	0.21	-1.3
4,722,586	-	DZA65_RS21855	0.21	+1.7
4,722,624	+	DZA65_RS21855	0.25	-1.0
4,722,624	+	DZA65_RS21855	0.25	-1.3
4,722,624	+	DZA65_RS21855	0.25	-0.9
4,722,625	-	DZA65_RS21855	0.25	-0.3
4,722,625	-	DZA65_RS21855	0.25	+1.3
4,722,625	-	DZA65_RS21855	0.25	+0.0
4,722,630	+	DZA65_RS21855	0.25	+0.1
4,722,630	+	DZA65_RS21855	0.25	-2.9
4,722,630	+	DZA65_RS21855	0.25	+0.5
4,722,630	+	DZA65_RS21855	0.25	-1.2
4,722,631	-			+1.7
4,722,631	-	DZA65_RS21855	0.25	+0.6
4,722,631	-	DZA65_RS21855	0.25	+0.3
4,722,636	+	DZA65_RS21855	0.26	+0.4
4,722,636	+	DZA65_RS21855	0.26	+0.7
4,722,636	+	DZA65_RS21855	0.26	-0.8
4,722,636	+	DZA65_RS21855	0.26	+1.7
4,722,636	+	DZA65_RS21855	0.26	-1.9
4,722,636	+	DZA65_RS21855	0.26	-1.4
4,722,636	+	DZA65_RS21855	0.26	+0.5
4,722,637	-	DZA65_RS21855	0.26	+0.2
4,722,637	-	DZA65_RS21855	0.26	-0.6
4,722,637	-	DZA65_RS21855	0.26	-0.3
4,722,646	+	DZA65_RS21855	0.27	+0.5
4,722,647	-	DZA65_RS21855	0.27	+0.1
4,722,660	+	DZA65_RS21855	0.28	-0.6
4,722,853	-	DZA65_RS21855	0.48	+1.0
4,722,853	-	DZA65_RS21855	0.48	+1.1
4,722,873	+	DZA65_RS21855	0.50	+0.3
4,722,873	+	DZA65_RS21855	0.50	-0.2
4,722,873	+	DZA65_RS21855	0.50	-0.7
4,722,873	+	DZA65_RS21855	0.50	+1.0
4,722,873	+	DZA65_RS21855	0.50	+0.5
4,722,873	+	DZA65_RS21855	0.50	+0.3
4,722,873	+	DZA65_RS21855	0.50	+0.2
4,722,873	+	DZA65_RS21855	0.50	+1.2
4,722,873	+	DZA65_RS21855	0.50	-0.9
4,722,873	+	DZA65_RS21855	0.50	+0.5
4,722,873	+	DZA65_RS21855	0.50	-0.5
4,722,873	+	DZA65_RS21855	0.50	-0.8
4,722,873	+	DZA65_RS21855	0.50	-1.9
4,722,873	+	DZA65_RS21855	0.50	+0.5
4,722,873	+	DZA65_RS21855	0.50	-1.7
4,722,873	+	DZA65_RS21855	0.50	+0.7
4,722,873	+	DZA65_RS21855	0.50	-1.7
4,722,873	+	DZA65_RS21855	0.50	+0.3
4,722,873	+	DZA65_RS21855	0.50	+1.3
4,722,873	+	DZA65_RS21855	0.50	-0.5
4,722,873	+	DZA65_RS21855	0.50	+1.8
4,722,873	+	DZA65_RS21855	0.50	+0.9
4,722,873	+	DZA65_RS21855	0.50	+0.1
4,722,873	+			-1.2
4,722,873	+	DZA65_RS21855	0.50	+1.9
4,722,873	+	DZA65_RS21855	0.50	+1.0
4,722,873	+	DZA65_RS21855	0.50	+0.5
4,722,873	+	DZA65_RS21855	0.50	+0.8
4,722,874	-	DZA65_RS21855	0.50	+1.3
4,722,874	-	DZA65_RS21855	0.50	+0.3
4,722,874	-	DZA65_RS21855	0.50	+0.3
4,722,874	-	DZA65_RS21855	0.50	+0.3
4,722,874	-	DZA65_RS21855	0.50	-1.5
4,722,874	-	DZA65_RS21855	0.50	+0.9
4,722,874	-	DZA65_RS21855	0.50	-0.2
4,722,874	-	DZA65_RS21855	0.50	+0.5
4,722,874	-	DZA65_RS21855	0.50	-0.2
4,722,874	-	DZA65_RS21855	0.50	-1.8
4,722,874	-	DZA65_RS21855	0.50	+1.1
4,722,874	-	DZA65_RS21855	0.50	-0.0
4,722,874	-	DZA65_RS21855	0.50	-1.4
4,722,874	-	DZA65_RS21855	0.50	-0.5
4,722,874	-	DZA65_RS21855	0.50	-1.7
4,722,874	-	DZA65_RS21855	0.50	+1.0
4,722,874	-	DZA65_RS21855	0.50	-0.3
4,722,874	-	DZA65_RS21855	0.50	-0.2
4,722,874	-	DZA65_RS21855	0.50	-0.5
4,722,874	-	DZA65_RS21855	0.50	-0.9
4,722,874	-	DZA65_RS21855	0.50	-0.5
4,722,874	-	DZA65_RS21855	0.50	-0.2
4,722,874	-	DZA65_RS21855	0.50	-1.3
4,722,874	-	DZA65_RS21855	0.50	+0.8
4,722,874	-	DZA65_RS21855	0.50	+0.1
4,722,874	-	DZA65_RS21855	0.50	-1.7
4,722,874	-	DZA65_RS21855	0.50	+0.4
4,722,874	-	DZA65_RS21855	0.50	-0.9
4,722,895	-	DZA65_RS21855	0.52	-2.2
4,722,895	-	DZA65_RS21855	0.52	+1.5
4,722,936	+	DZA65_RS21855	0.56	-0.9
4,722,937	+	DZA65_RS21855	0.56	-0.6
4,722,937	+	DZA65_RS21855	0.56	+0.8
4,722,937	+	DZA65_RS21855	0.56	+0.4
4,722,937	+	DZA65_RS21855	0.56	-0.5
4,722,937	+	DZA65_RS21855	0.56	-0.3
4,722,937	+	DZA65_RS21855	0.56	-0.7
4,722,937	+	DZA65_RS21855	0.56	+2.4
4,722,937	+	DZA65_RS21855	0.56	+0.7
4,722,937	+	DZA65_RS21855	0.56	-0.7
4,722,937	+	DZA65_RS21855	0.56	-1.9
4,722,937	+	DZA65_RS21855	0.56	-0.8
4,722,937	+	DZA65_RS21855	0.56	-0.5
4,722,938	-	DZA65_RS21855	0.56	-2.9
4,722,938	-	DZA65_RS21855	0.56	+0.8
4,722,941	-	DZA65_RS21855	0.56	-0.2
4,723,003	+	DZA65_RS21855	0.63	-1.9
4,723,003	+	DZA65_RS21855	0.63	+1.3
4,723,003	+	DZA65_RS21855	0.63	+0.2
4,723,003	+	DZA65_RS21855	0.63	+0.8
4,723,003	+	DZA65_RS21855	0.63	+1.1
4,723,003	+	DZA65_RS21855	0.63	+0.5
4,723,003	+	DZA65_RS21855	0.63	+0.7
4,723,004	-	DZA65_RS21855	0.63	-0.5
4,723,004	-	DZA65_RS21855	0.63	-1.7
4,723,004	-	DZA65_RS21855	0.63	+0.7
4,723,004	-	DZA65_RS21855	0.63	-0.2
4,723,004	-	DZA65_RS21855	0.63	+0.9
4,723,004	-	DZA65_RS21855	0.63	-0.6
4,723,004	-			+0.7
4,723,004	-	DZA65_RS21855	0.63	-2.3
4,723,004	-	DZA65_RS21855	0.63	-0.6
4,723,016	+	DZA65_RS21855	0.64	+0.5
4,723,016	+	DZA65_RS21855	0.64	+0.4
4,723,017	-	DZA65_RS21855	0.64	+0.1
4,723,017	-	DZA65_RS21855	0.64	+1.0
4,723,017	-	DZA65_RS21855	0.64	-0.9
4,723,017	-	DZA65_RS21855	0.64	+0.1
4,723,063	+	DZA65_RS21855	0.69	+1.3
4,723,064	-	DZA65_RS21855	0.69	+0.5
4,723,064	-	DZA65_RS21855	0.69	+0.6
4,723,104	+	DZA65_RS21855	0.73	+0.2
4,723,104	+	DZA65_RS21855	0.73	-2.1
4,723,104	+	DZA65_RS21855	0.73	-1.5
4,723,105	-	DZA65_RS21855	0.73	-0.9
4,723,105	-	DZA65_RS21855	0.73	+0.5
4,723,182	+	DZA65_RS21855	0.81	+0.4
4,723,182	+	DZA65_RS21855	0.81	+0.7
4,723,182	+	DZA65_RS21855	0.81	-1.8
4,723,238	-	DZA65_RS21855	0.86	+2.2
4,723,238	-	DZA65_RS21855	0.86	-0.5
4,723,285	+			+0.9
4,723,285	+			-1.9
4,723,285	+			-0.6
4,723,285	+			-0.5
4,723,286	-			-0.3
4,723,286	-			-0.4
4,723,286	-			-0.3
4,723,286	-			-1.2
4,723,287	+			+0.7
4,723,287	+			+0.1
4,723,288	-			-1.5
4,723,288	-			+0.1
4,723,288	-			+0.7
4,723,288	-			-1.8
4,723,288	-			-1.3
4,723,288	-			-0.6
4,723,370	+			+0.7
4,723,371	-			+0.8
4,723,371	-			-1.5
4,723,376	+			+0.4
4,723,376	+			-2.9
4,723,376	+			-0.3
4,723,376	+			-0.6
4,723,376	+			-0.8
4,723,376	+			+2.3
4,723,376	+			-1.2
4,723,376	+			+0.1
4,723,377	-			-0.5
4,723,377	-			-0.5
4,723,377	-			-0.5
4,723,377	-			-0.2
4,723,572	+	DZA65_RS21860	0.39	+0.4
4,723,572	+	DZA65_RS21860	0.39	-0.1
4,723,573	-	DZA65_RS21860	0.40	-0.6
4,723,573	-	DZA65_RS21860	0.40	+1.1
4,723,822	-			+0.7
4,723,824	+			+1.5
4,723,824	+			+0.7
4,723,824	+			+2.0
4,723,824	+			+2.2
4,723,824	+			-0.3
4,723,824	+			+1.0
4,723,824	+			-1.1
4,723,824	+			-1.0
4,723,824	+			-0.0
4,723,824	+			+0.8
4,723,824	+			-1.2
4,723,824	+			+0.4
4,723,825	-			+0.1
4,723,825	-			+2.7
4,723,825	-			+1.5
4,723,825	-			+0.2
4,723,825	-			-1.6
4,723,825	-			-0.3
4,723,825	-			+0.1
4,723,825	-			+0.7
4,723,825	-			-0.6
4,723,825	-			+1.8
4,723,829	+			+0.6
4,723,829	+			-0.1
4,723,829	+			+0.4
4,723,829	+			-0.2
4,723,829	+			-0.3
4,723,829	+			+0.5
4,723,829	+			-0.7
4,723,829	+			-1.7
4,723,829	+			-0.3
4,723,830	-			+0.4
4,723,830	-			+1.4
4,723,830	-			-1.7
4,723,830	-			-2.6
4,723,830	-			-0.9
4,723,830	-			-0.5
4,723,830	-			+1.7
4,723,830	-			-0.3
4,723,830	-			+0.8
4,723,830	-			+0.7
4,723,830	-			+0.1
4,723,859	+			+0.5
4,723,859	+			+0.3
4,723,859	+			-0.5
4,723,859	+			-0.3
4,723,859	+			-0.7
4,723,859	+			+0.4
4,723,859	+			+0.9
4,723,859	+			-0.6
4,723,859	+			+1.1
4,723,859	+			+1.5
4,723,859	+			-2.6
4,723,859	+			-1.0
4,723,860	-			-0.0
4,723,860	-			+0.7
4,723,860	-			+1.1
4,723,860	-			+0.7
4,723,860	-			-0.9
4,723,860	-			-2.8
4,723,860	-			-2.2
4,723,860	-			+0.6
4,723,860	-			-0.5
4,723,860	-			+0.9
4,723,860	-			-0.4
4,723,860	-			+1.4
4,723,878	-			+1.0
4,723,886	+			+0.1
4,723,886	+			+0.8
4,723,886	+			-0.2
4,723,908	+			+3.9
4,723,909	-			+2.4
4,723,909	-			+0.4
4,723,909	-			+0.4
4,723,910	+			+0.5
4,723,910	+			+1.1
4,723,910	+			-0.5
4,723,910	+			-0.7
4,723,911	-			-0.6
4,723,911	-			-1.3
4,723,911	-			+0.9
4,723,911	-			-1.0
4,723,911	-			-1.9
4,723,911	-			+1.4
4,723,928	+			-0.7
4,723,928	+			-1.3
4,723,928	+			-0.5
4,723,928	+			-0.5
4,723,928	+			+2.7
4,723,928	+			+1.1
4,723,928	+			+1.7
4,723,929	-			+1.5
4,723,929	-			+1.7
4,723,959	+			+1.2
4,723,959	+			-1.5
4,723,959	+			+0.4
4,723,960	-			-0.7
4,723,964	-			-0.2
4,723,992	+			+0.3
4,723,994	+			+1.3
4,723,994	+			-0.7
4,723,994	+			-0.6
4,723,994	+			-0.9
4,723,994	+			+0.1
4,723,994	+			+0.8
4,724,010	+			-0.3
4,724,010	+			-0.5
4,724,010	+			+0.7
4,724,010	+			+0.0
4,724,010	+			+1.1
4,724,010	+			-0.2
4,724,010	+			-0.3
4,724,011	-			+0.2
4,724,011	-			+1.3
4,724,024	+			-1.0
4,724,024	+			-0.4
4,724,025	-			-0.2
4,724,025	-			+0.7
4,724,120	+			+0.7
4,724,120	+			+1.1
4,724,121	-			-0.6
4,724,121	-			+0.1
4,724,121	-			-0.2
4,724,151	+			-0.9
4,724,152	-			-0.5
4,724,168	+			-0.1
4,724,168	+			+1.7
4,724,168	+			+0.2
4,724,168	+			+1.1
4,724,168	+			+0.3
4,724,168	+			-2.4
4,724,169	-			-1.8
4,724,169	-			-1.2
4,724,169	-			-1.5
4,724,169	-			+0.6
4,724,207	+			-1.5
4,724,207	+			+0.1
4,724,207	+			-0.5
4,724,207	+			-0.3
4,724,207	+			+2.1
4,724,207	+			+0.1
4,724,207	+			-0.4
4,724,207	+			+0.7
4,724,207	+			+1.2
4,724,207	+			-1.5
4,724,207	+			-0.1
4,724,207	+			+0.0
4,724,207	+			+1.1
4,724,207	+			-1.6
4,724,208	-			-0.5
4,724,208	-			+0.5
4,724,208	-			+0.1
4,724,208	-			+0.9
4,724,208	-			-1.7
4,724,208	-			+0.2
4,724,208	-			+1.1
4,724,226	-			-1.2
4,724,226	-			+0.4
4,724,240	+			+0.5
4,724,240	+			+0.0
4,724,240	+			+0.6
4,724,240	+			+0.8
4,724,240	+			+0.1
4,724,241	-			+0.4
4,724,241	-			+1.8
4,724,241	-			-0.3
4,724,241	-			-0.5
4,724,241	-			+1.4
4,724,241	-			-1.7
4,724,246	+			+1.1
4,724,246	+			+0.5
4,724,246	+			+0.4
4,724,247	-			+0.7
4,724,247	-			-1.1
4,724,247	-			+0.2
4,724,247	-			-1.1
4,724,247	-			-0.5
4,724,247	-			+0.6
4,724,247	-			+0.3
4,724,332	-	DZA65_RS21865	0.12	+0.3
4,724,333	+	DZA65_RS21865	0.12	-0.0
4,724,333	+	DZA65_RS21865	0.12	-0.0
4,724,333	+	DZA65_RS21865	0.12	-1.1
4,724,333	+	DZA65_RS21865	0.12	-1.6
4,724,333	+	DZA65_RS21865	0.12	-1.9
4,724,333	+	DZA65_RS21865	0.12	+0.1
4,724,333	+	DZA65_RS21865	0.12	-0.0
4,724,333	+			+0.1
4,724,334	-	DZA65_RS21865	0.12	+0.3
4,724,334	-	DZA65_RS21865	0.12	-0.9
4,724,334	-	DZA65_RS21865	0.12	-0.7
4,724,334	-			+3.0
4,724,334	-	DZA65_RS21865	0.12	-0.4
4,724,334	-	DZA65_RS21865	0.12	+1.1
4,724,334	-	DZA65_RS21865	0.12	-0.8
4,724,334	-	DZA65_RS21865	0.12	+0.4
4,724,334	-	DZA65_RS21865	0.12	-1.2
4,724,334	-	DZA65_RS21865	0.12	+0.1
4,724,361	+	DZA65_RS21865	0.13	-2.1
4,724,361	+	DZA65_RS21865	0.13	+1.1
4,724,361	+	DZA65_RS21865	0.13	+1.1
4,724,361	+	DZA65_RS21865	0.13	-1.2
4,724,362	-	DZA65_RS21865	0.13	+0.9
4,724,362	-	DZA65_RS21865	0.13	-1.2

Or see this region's nucleotide sequence