Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19525

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glycerol
				remove
4,223,492	+	DZA65_RS19515	0.20	-1.8
4,223,492	+	DZA65_RS19515	0.20	+1.3
4,223,493	-	DZA65_RS19515	0.20	-1.3
4,223,493	-	DZA65_RS19515	0.20	+0.3
4,223,519	+	DZA65_RS19515	0.25	-0.8
4,223,519	+	DZA65_RS19515	0.25	-1.1
4,223,519	+	DZA65_RS19515	0.25	-0.1
4,223,520	-	DZA65_RS19515	0.25	-1.1
4,223,520	-	DZA65_RS19515	0.25	-0.7
4,223,520	-	DZA65_RS19515	0.25	-4.1
4,223,520	-	DZA65_RS19515	0.25	-0.9
4,223,520	-	DZA65_RS19515	0.25	-1.0
4,223,600	+	DZA65_RS19515	0.40	-0.3
4,223,696	+	DZA65_RS19515	0.58	-0.1
4,223,808	-	DZA65_RS19515	0.79	-2.0
4,223,842	+	DZA65_RS19515	0.85	-1.8
4,223,842	+	DZA65_RS19515	0.85	-0.6
4,223,842	+	DZA65_RS19515	0.85	-0.1
4,223,842	+	DZA65_RS19515	0.85	-1.7
4,223,842	+	DZA65_RS19515	0.85	-1.4
4,223,842	+	DZA65_RS19515	0.85	-1.5
4,223,843	-	DZA65_RS19515	0.85	-2.1
4,223,843	-	DZA65_RS19515	0.85	+0.8
4,223,843	-	DZA65_RS19515	0.85	-0.7
4,223,843	-	DZA65_RS19515	0.85	-1.0
4,223,843	-	DZA65_RS19515	0.85	-0.1
4,223,843	-	DZA65_RS19515	0.85	-1.7
4,223,843	-	DZA65_RS19515	0.85	-0.1
4,223,843	-	DZA65_RS19515	0.85	-2.5
4,223,843	-	DZA65_RS19515	0.85	-2.2
4,223,843	-	DZA65_RS19515	0.85	-0.5
4,223,843	-			-1.1
4,223,843	-	DZA65_RS19515	0.85	-0.1
4,223,843	-	DZA65_RS19515	0.85	-0.8
4,223,846	-	DZA65_RS19515	0.86	+0.1
4,223,846	-	DZA65_RS19515	0.86	-0.7
4,223,880	+			-1.0
4,223,890	+			+0.6
4,223,908	-			-1.1
4,223,945	+			-0.4
4,223,945	+			-0.5
4,223,956	-			-0.0
4,224,099	-	DZA65_RS19520	0.49	-0.3
4,224,101	+	DZA65_RS19520	0.49	-1.4
4,224,101	+	DZA65_RS19520	0.49	-1.7
4,224,102	-	DZA65_RS19520	0.50	+0.1
4,224,102	-	DZA65_RS19520	0.50	-2.8
4,224,102	-	DZA65_RS19520	0.50	-0.7
4,224,102	-	DZA65_RS19520	0.50	+0.5
4,224,102	-	DZA65_RS19520	0.50	-0.5
4,224,102	-	DZA65_RS19520	0.50	+1.7
4,224,240	+			+0.6
4,224,269	+			+0.7
4,224,309	+			+0.5
4,224,309	+			+0.9
4,224,309	+			-1.7
4,224,309	+			+1.1
4,224,310	-			-1.9
4,224,310	-			-0.3
4,224,312	+			-0.1
4,224,312	+			+1.3
4,224,358	+			-0.7
4,224,372	+			+0.3
4,224,372	+			+2.1
4,224,373	-			-1.1
4,224,373	-			-0.8
4,224,373	-			-0.4
4,224,432	+			+0.6
4,224,432	+			-0.2
4,224,432	+			-1.8
4,224,432	+			-0.5
4,224,432	+			-0.7
4,224,432	+			+0.4
4,224,432	+			+3.1
4,224,433	-			-0.3
4,224,433	-			-0.5
4,224,433	-			-0.3
4,224,433	-			-0.1
4,224,433	-			-2.0
4,224,433	-			-0.7
4,224,433	-			+0.3
4,224,436	+			-0.8
4,224,436	+			-1.7
4,224,436	+			-0.5
4,224,436	+			-1.0
4,224,436	+			+1.1
4,224,436	+			-1.1
4,224,436	+			+0.9
4,224,436	+			-1.3
4,224,436	+			+1.2
4,224,436	+			+0.4
4,224,436	+			-1.9
4,224,436	+			+0.4
4,224,436	+			-1.3
4,224,437	-			-1.1
4,224,437	-			+0.1
4,224,437	-			+0.2
4,224,437	-			+1.7
4,224,437	-			-0.3
4,224,437	-			-1.4
4,224,439	+			-1.0
4,224,439	+			-1.4
4,224,440	-			-0.7
4,224,440	-			+0.7
4,224,440	-			+1.8
4,224,539	+			+1.7
4,224,540	-			+0.6
4,224,556	+			+0.7
4,224,556	+			+0.5
4,224,556	+			+1.1
4,224,556	+			+0.8
4,224,556	+			+1.7
4,224,556	+			+1.7
4,224,557	-			+1.5
4,224,557	-			+1.1
4,224,557	-			+1.7
4,224,557	-			+1.5
4,224,557	-			+2.5
4,224,557	-			-0.2
4,224,557	-			-0.4
4,224,557	-			-1.8
4,224,557	-			+1.5
4,224,557	-			+1.0
4,224,557	-			+1.6
4,224,557	-			+0.9
4,224,557	-			+0.7
4,224,557	-			-0.5
4,224,557	-			+1.4
4,224,557	-			+1.2
4,224,564	+			+4.4
4,224,565	-			+0.9
4,224,565	-			+1.2
4,224,577	+			+0.5
4,224,577	+			+1.9
4,224,577	+			+0.9
4,224,577	+			+1.2
4,224,578	-			+0.1
4,224,578	-			-0.2
4,224,656	+			+1.7
4,224,656	+			+0.3
4,224,656	+			+0.9
4,224,656	+			+2.5
4,224,657	-			+0.8
4,224,657	-			+0.5
4,224,657	-			+1.0
4,224,657	-			-0.7
4,224,682	+	DZA65_RS19525	0.11	-0.8
4,224,724	+	DZA65_RS19525	0.13	-0.3
4,224,724	+	DZA65_RS19525	0.13	+0.9
4,224,730	+	DZA65_RS19525	0.13	+0.5
4,224,730	+	DZA65_RS19525	0.13	+1.1
4,224,730	+	DZA65_RS19525	0.13	+1.0
4,224,730	+	DZA65_RS19525	0.13	+1.2
4,224,730	+	DZA65_RS19525	0.13	+0.5
4,224,730	+			+0.9
4,224,730	+	DZA65_RS19525	0.13	+1.4
4,224,731	-	DZA65_RS19525	0.13	+0.1
4,224,731	-	DZA65_RS19525	0.13	+0.7
4,224,731	-	DZA65_RS19525	0.13	+1.3
4,224,731	-	DZA65_RS19525	0.13	+1.9
4,224,731	-	DZA65_RS19525	0.13	+1.0
4,224,731	-	DZA65_RS19525	0.13	+0.7
4,224,731	-	DZA65_RS19525	0.13	+0.1
4,224,731	-	DZA65_RS19525	0.13	+0.3
4,224,731	-	DZA65_RS19525	0.13	-0.1
4,224,740	-	DZA65_RS19525	0.14	+1.6
4,224,740	-	DZA65_RS19525	0.14	-2.1
4,224,740	-	DZA65_RS19525	0.14	+2.5
4,224,740	-	DZA65_RS19525	0.14	+1.1
4,224,740	-	DZA65_RS19525	0.14	+0.7
4,224,740	-	DZA65_RS19525	0.14	-0.6
4,224,740	-	DZA65_RS19525	0.14	+0.3
4,224,758	+	DZA65_RS19525	0.15	+1.5
4,224,759	-	DZA65_RS19525	0.15	+1.7
4,224,759	-	DZA65_RS19525	0.15	+1.5
4,224,759	-	DZA65_RS19525	0.15	-1.9
4,224,794	+	DZA65_RS19525	0.16	+1.2
4,224,794	+	DZA65_RS19525	0.16	+1.0
4,224,794	+	DZA65_RS19525	0.16	+1.2
4,224,794	+	DZA65_RS19525	0.16	+1.1
4,224,794	+	DZA65_RS19525	0.16	+1.1
4,224,794	+	DZA65_RS19525	0.16	+1.8
4,224,794	+	DZA65_RS19525	0.16	-0.4
4,224,795	-	DZA65_RS19525	0.16	-1.9
4,224,795	-	DZA65_RS19525	0.16	-0.8
4,224,795	-	DZA65_RS19525	0.16	+1.1
4,224,795	-	DZA65_RS19525	0.16	+3.5
4,224,796	+	DZA65_RS19525	0.17	+1.1
4,224,796	+	DZA65_RS19525	0.17	+1.2
4,224,796	+	DZA65_RS19525	0.17	-0.1
4,224,796	+	DZA65_RS19525	0.17	+0.9
4,224,796	+	DZA65_RS19525	0.17	+0.5
4,224,797	-	DZA65_RS19525	0.17	-0.7
4,224,797	-	DZA65_RS19525	0.17	+2.4
4,224,797	-	DZA65_RS19525	0.17	+1.2
4,224,797	-	DZA65_RS19525	0.17	-0.4
4,224,809	+	DZA65_RS19525	0.17	+1.9
4,224,809	+	DZA65_RS19525	0.17	+1.5
4,224,810	-	DZA65_RS19525	0.17	+0.4
4,224,810	-	DZA65_RS19525	0.17	+2.3
4,224,810	-	DZA65_RS19525	0.17	+0.4
4,224,810	-	DZA65_RS19525	0.17	+1.1
4,224,923	+	DZA65_RS19525	0.23	+0.5
4,224,924	-	DZA65_RS19525	0.23	+1.5
4,224,928	+	DZA65_RS19525	0.23	+0.1
4,224,928	+	DZA65_RS19525	0.23	+1.1
4,224,928	+	DZA65_RS19525	0.23	+1.5
4,224,928	+	DZA65_RS19525	0.23	+0.5
4,224,928	+	DZA65_RS19525	0.23	+1.9
4,224,928	+	DZA65_RS19525	0.23	+0.5
4,224,928	+	DZA65_RS19525	0.23	+1.5
4,224,928	+	DZA65_RS19525	0.23	+0.3
4,224,928	+	DZA65_RS19525	0.23	+2.3
4,224,929	-	DZA65_RS19525	0.23	+1.7
4,224,929	-	DZA65_RS19525	0.23	-0.5
4,224,929	-	DZA65_RS19525	0.23	+1.8
4,224,929	-	DZA65_RS19525	0.23	+0.6
4,224,929	-	DZA65_RS19525	0.23	+0.6
4,224,929	-	DZA65_RS19525	0.23	-0.4
4,224,929	-	DZA65_RS19525	0.23	+1.9
4,224,929	-	DZA65_RS19525	0.23	+1.0
4,224,929	-	DZA65_RS19525	0.23	+0.5
4,224,938	+	DZA65_RS19525	0.24	+0.3
4,224,938	+	DZA65_RS19525	0.24	+0.5
4,225,051	+	DZA65_RS19525	0.30	+1.1
4,225,051	+	DZA65_RS19525	0.30	+0.7
4,225,051	+	DZA65_RS19525	0.30	+0.7
4,225,052	-	DZA65_RS19525	0.30	+1.0
4,225,229	+	DZA65_RS19525	0.39	-0.0
4,225,229	+	DZA65_RS19525	0.39	+0.9
4,225,230	-	DZA65_RS19525	0.39	+1.0
4,225,230	-			+0.3
4,225,243	+	DZA65_RS19525	0.40	-0.3
4,225,244	-	DZA65_RS19525	0.40	+1.0
4,225,279	+	DZA65_RS19525	0.42	-1.5
4,225,354	-	DZA65_RS19525	0.45	+1.6
4,225,354	-	DZA65_RS19525	0.45	-0.5
4,225,677	+	DZA65_RS19525	0.62	+1.2
4,225,678	-	DZA65_RS19525	0.62	+2.3
4,225,680	+	DZA65_RS19525	0.62	+1.3
4,225,681	-	DZA65_RS19525	0.62	+1.2
4,225,740	-	DZA65_RS19525	0.65	+1.5
4,225,740	-	DZA65_RS19525	0.65	+0.6
4,225,775	+			-1.4
4,225,775	+	DZA65_RS19525	0.67	+0.3
4,225,775	+	DZA65_RS19525	0.67	+1.3
4,225,776	-	DZA65_RS19525	0.67	+0.7
4,225,776	-	DZA65_RS19525	0.67	-2.5
4,225,776	-	DZA65_RS19525	0.67	+1.6
4,225,781	+	DZA65_RS19525	0.67	+1.0
4,225,781	+	DZA65_RS19525	0.67	+0.4
4,225,781	+	DZA65_RS19525	0.67	+0.9
4,225,781	+	DZA65_RS19525	0.67	+0.5
4,225,781	+	DZA65_RS19525	0.67	-0.6
4,225,781	+	DZA65_RS19525	0.67	+0.1
4,225,781	+	DZA65_RS19525	0.67	+0.6
4,225,781	+	DZA65_RS19525	0.67	+0.9
4,225,781	+	DZA65_RS19525	0.67	+0.9
4,225,781	+	DZA65_RS19525	0.67	+1.0
4,225,781	+	DZA65_RS19525	0.67	-0.5
4,225,781	+	DZA65_RS19525	0.67	+1.9
4,225,781	+	DZA65_RS19525	0.67	+0.6
4,225,781	+	DZA65_RS19525	0.67	+0.4
4,225,781	+	DZA65_RS19525	0.67	+0.3
4,225,781	+	DZA65_RS19525	0.67	+1.6
4,225,781	+	DZA65_RS19525	0.67	+1.5
4,225,781	+	DZA65_RS19525	0.67	+1.2
4,225,782	-	DZA65_RS19525	0.68	+1.4
4,225,782	-	DZA65_RS19525	0.68	+0.8
4,225,782	-	DZA65_RS19525	0.68	-0.1
4,225,782	-	DZA65_RS19525	0.68	+1.1
4,225,782	-	DZA65_RS19525	0.68	-0.5
4,225,782	-	DZA65_RS19525	0.68	+0.8
4,225,782	-	DZA65_RS19525	0.68	+1.1
4,225,782	-	DZA65_RS19525	0.68	+0.9
4,225,782	-	DZA65_RS19525	0.68	+1.9
4,225,782	-	DZA65_RS19525	0.68	+2.4
4,225,782	-	DZA65_RS19525	0.68	+0.9
4,225,782	-	DZA65_RS19525	0.68	+0.4
4,225,782	-	DZA65_RS19525	0.68	+1.0
4,225,782	-	DZA65_RS19525	0.68	+0.5
4,225,782	-	DZA65_RS19525	0.68	+0.6
4,225,782	-	DZA65_RS19525	0.68	+2.2
4,225,782	-	DZA65_RS19525	0.68	+1.3
4,225,783	+	DZA65_RS19525	0.68	+1.6
4,225,783	+	DZA65_RS19525	0.68	+0.5
4,225,783	+	DZA65_RS19525	0.68	+1.5
4,225,783	+	DZA65_RS19525	0.68	-0.7
4,225,784	-	DZA65_RS19525	0.68	+1.1
4,225,784	-	DZA65_RS19525	0.68	+1.4
4,225,784	-	DZA65_RS19525	0.68	+1.0
4,225,784	-	DZA65_RS19525	0.68	+0.4
4,225,784	-	DZA65_RS19525	0.68	+0.8
4,225,784	-	DZA65_RS19525	0.68	-0.1
4,225,784	-	DZA65_RS19525	0.68	+0.7
4,225,908	+	DZA65_RS19525	0.74	+2.4
4,225,908	+	DZA65_RS19525	0.74	-0.5
4,225,908	+	DZA65_RS19525	0.74	+1.1
4,225,908	+	DZA65_RS19525	0.74	+0.9
4,225,908	+	DZA65_RS19525	0.74	+1.1
4,225,909	-	DZA65_RS19525	0.74	-0.7
4,225,909	-	DZA65_RS19525	0.74	+0.6
4,225,909	-	DZA65_RS19525	0.74	+1.8
4,225,909	-	DZA65_RS19525	0.74	+0.5
4,226,005	+	DZA65_RS19525	0.79	+1.1
4,226,005	+	DZA65_RS19525	0.79	+1.7
4,226,006	-	DZA65_RS19525	0.79	+2.1
4,226,006	-	DZA65_RS19525	0.79	+1.5
4,226,011	+	DZA65_RS19525	0.79	+0.6
4,226,011	+	DZA65_RS19525	0.79	+1.8
4,226,011	+	DZA65_RS19525	0.79	+1.2
4,226,011	+	DZA65_RS19525	0.79	+1.7
4,226,011	+	DZA65_RS19525	0.79	-1.9
4,226,011	+	DZA65_RS19525	0.79	-0.5
4,226,011	+	DZA65_RS19525	0.79	+0.6
4,226,011	+	DZA65_RS19525	0.79	-0.5
4,226,011	+	DZA65_RS19525	0.79	+0.9
4,226,012	-	DZA65_RS19525	0.79	-0.1
4,226,012	-	DZA65_RS19525	0.79	+0.9
4,226,012	-	DZA65_RS19525	0.79	+1.4
4,226,012	-	DZA65_RS19525	0.79	+2.2
4,226,012	-	DZA65_RS19525	0.79	+1.9
4,226,012	-	DZA65_RS19525	0.79	-0.4
4,226,012	-	DZA65_RS19525	0.79	-0.8
4,226,012	-	DZA65_RS19525	0.79	+1.4
4,226,012	-	DZA65_RS19525	0.79	-2.5
4,226,012	-	DZA65_RS19525	0.79	+1.5
4,226,012	-	DZA65_RS19525	0.79	+2.2
4,226,012	-	DZA65_RS19525	0.79	-0.2
4,226,012	-	DZA65_RS19525	0.79	+0.4
4,226,012	-	DZA65_RS19525	0.79	+0.3
4,226,015	+	DZA65_RS19525	0.80	+2.7
4,226,015	+	DZA65_RS19525	0.80	+1.0
4,226,015	+	DZA65_RS19525	0.80	+0.9
4,226,015	+	DZA65_RS19525	0.80	+0.9
4,226,015	+	DZA65_RS19525	0.80	+1.2
4,226,015	+	DZA65_RS19525	0.80	+1.3
4,226,016	-	DZA65_RS19525	0.80	+0.9
4,226,016	-	DZA65_RS19525	0.80	+0.3
4,226,099	+	DZA65_RS19525	0.84	+0.5
4,226,100	-	DZA65_RS19525	0.84	+1.4
4,226,118	-	DZA65_RS19525	0.85	-1.0
4,226,222	-			+0.8
4,226,222	-			+0.9
4,226,230	+			+0.9
4,226,239	-			+1.2
4,226,239	-			+0.7
4,226,276	+			-0.1
4,226,276	+			+0.9
4,226,279	+			+2.1
4,226,296	-			+2.5
4,226,392	+			+0.4
4,226,393	-			-1.7
4,226,397	+			+0.7
4,226,398	-			-0.5
4,226,398	-			+0.3
4,226,398	-			+1.8
4,226,398	-			+1.9
4,226,408	+			+0.9
4,226,408	+			-0.2
4,226,408	+			+0.9
4,226,408	+			+0.2
4,226,408	+			-1.1
4,226,408	+			-0.5
4,226,408	+			+1.1
4,226,408	+			+0.2
4,226,408	+			+2.5
4,226,408	+			+1.9
4,226,409	-			-1.4
4,226,409	-			-0.1
4,226,409	-			-0.7
4,226,409	-			-1.0
4,226,409	-			-0.7
4,226,409	-			-1.4
4,226,409	-			-0.8
4,226,409	-			-0.9
4,226,409	-			-1.0
4,226,409	-			+0.6
4,226,409	-			-1.9
4,226,503	+			-1.1
4,226,503	+			-1.5
4,226,503	+			+1.1
4,226,504	-			+0.0
4,226,504	-			-0.1
4,226,504	-			-0.7
4,226,504	-			-1.1
4,226,504	-			-1.7
4,226,540	+			-0.8
4,226,540	+			+0.8
4,226,540	+			-0.7
4,226,540	+			+0.4
4,226,541	-			+0.2
4,226,550	+			-0.7
4,226,550	+			+1.2
4,226,551	-			-0.9
4,226,551	-			-0.5
4,226,551	-			+0.0
4,226,568	+			-0.7
4,226,569	-			-0.9
4,226,584	+			+1.2
4,226,585	-			-1.3
4,226,585	-			+0.2
4,226,585	-			-0.9
4,226,585	-			-1.4
4,226,585	-			-1.5
4,226,620	+			-0.2
4,226,740	+			+0.9
4,226,740	+			-0.6
4,226,741	-			+0.0
4,226,741	-			+0.1
4,226,741	-			+0.1
4,226,756	+			-0.5
4,226,756	+			+0.6
4,226,756	+			-0.7
4,226,756	+			-0.0
4,226,757	-			-0.6
4,226,757	-			+0.7
4,226,757	-			-1.1
4,226,824	-			-2.0
4,226,876	+			+0.5
4,226,877	-			+0.6
4,226,877	-			+0.5
4,226,882	+			+0.5
4,226,882	+			+1.2
4,226,882	+			+0.5
4,226,882	+			+1.0
4,226,882	+			+1.5
4,226,883	-			-1.1
4,226,883	-			-2.2
4,226,926	+			+0.6
4,226,938	+			-2.4
4,226,998	+			-0.1
4,227,020	-			+0.3
4,227,084	-	DZA65_RS19530	0.13	+0.2
4,227,188	+	DZA65_RS19530	0.19	+1.1
4,227,188	+	DZA65_RS19530	0.19	-0.8
4,227,188	+	DZA65_RS19530	0.19	+0.5
4,227,189	-	DZA65_RS19530	0.19	+1.0
4,227,189	-	DZA65_RS19530	0.19	+1.1
4,227,189	-	DZA65_RS19530	0.19	-0.4

Or see this region's nucleotide sequence