Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07100

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07095 and DZA65_RS07100 are separated by 302 nucleotidesDZA65_RS07100 and DZA65_RS07105 are separated by 224 nucleotides DZA65_RS07095: DZA65_RS07095 - tyrosine-protein kinase Wzc, at 1,471,704 to 1,473,884 _RS07095 DZA65_RS07100: DZA65_RS07100 - undecaprenyl-phosphate galactose phosphotransferase WbaP, at 1,474,187 to 1,475,602 _RS07100 DZA65_RS07105: DZA65_RS07105 - glycosyltransferase family 2 protein, at 1,475,827 to 1,476,738 _RS07105 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1473.422 kb on + strand, within DZA65_RS07095at 1473.422 kb on + strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.435 kb on - strand, within DZA65_RS07095at 1473.435 kb on - strand, within DZA65_RS07095at 1473.444 kb on - strand, within DZA65_RS07095at 1473.508 kb on + strand, within DZA65_RS07095at 1473.509 kb on - strand, within DZA65_RS07095at 1473.516 kb on - strand, within DZA65_RS07095at 1473.516 kb on - strand, within DZA65_RS07095at 1473.820 kb on - strandat 1473.822 kb on + strandat 1473.822 kb on + strandat 1473.823 kb on - strandat 1473.823 kb on - strandat 1473.829 kb on - strandat 1473.843 kb on + strandat 1473.844 kb on - strandat 1473.881 kb on - strandat 1473.963 kb on - strandat 1474.153 kb on - strandat 1474.186 kb on + strandat 1474.187 kb on - strandat 1474.221 kb on + strandat 1474.222 kb on - strandat 1474.222 kb on - strandat 1474.224 kb on + strandat 1474.252 kb on + strandat 1474.252 kb on + strandat 1474.265 kb on + strandat 1474.270 kb on - strandat 1474.270 kb on - strandat 1474.281 kb on + strandat 1474.282 kb on - strandat 1474.497 kb on - strand, within DZA65_RS07100at 1474.580 kb on - strand, within DZA65_RS07100at 1474.580 kb on - strand, within DZA65_RS07100at 1474.583 kb on - strand, within DZA65_RS07100at 1474.612 kb on + strand, within DZA65_RS07100at 1474.669 kb on + strand, within DZA65_RS07100at 1474.669 kb on + strand, within DZA65_RS07100at 1474.718 kb on - strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.758 kb on - strand, within DZA65_RS07100at 1474.758 kb on - strand, within DZA65_RS07100at 1474.773 kb on + strand, within DZA65_RS07100at 1474.774 kb on - strand, within DZA65_RS07100at 1474.780 kb on + strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.919 kb on + strand, within DZA65_RS07100at 1474.919 kb on + strand, within DZA65_RS07100at 1474.920 kb on - strand, within DZA65_RS07100at 1474.930 kb on + strand, within DZA65_RS07100at 1474.931 kb on - strand, within DZA65_RS07100at 1474.931 kb on - strand, within DZA65_RS07100at 1474.940 kb on - strand, within DZA65_RS07100at 1475.023 kb on + strand, within DZA65_RS07100at 1475.044 kb on + strand, within DZA65_RS07100at 1475.044 kb on + strand, within DZA65_RS07100at 1475.045 kb on - strand, within DZA65_RS07100at 1475.045 kb on - strand, within DZA65_RS07100at 1475.048 kb on - strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.074 kb on + strand, within DZA65_RS07100at 1475.075 kb on - strand, within DZA65_RS07100at 1475.075 kb on - strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.115 kb on - strand, within DZA65_RS07100at 1475.152 kb on + strand, within DZA65_RS07100at 1475.152 kb on + strand, within DZA65_RS07100at 1475.173 kb on + strand, within DZA65_RS07100at 1475.173 kb on + strand, within DZA65_RS07100at 1475.174 kb on - strand, within DZA65_RS07100at 1475.174 kb on - strand, within DZA65_RS07100at 1475.254 kb on + strandat 1475.254 kb on + strand, within DZA65_RS07100at 1475.279 kb on - strand, within DZA65_RS07100at 1475.323 kb on - strand, within DZA65_RS07100at 1475.335 kb on + strand, within DZA65_RS07100at 1475.335 kb on + strand, within DZA65_RS07100at 1475.336 kb on - strand, within DZA65_RS07100at 1475.336 kb on - strand, within DZA65_RS07100at 1475.420 kb on + strand, within DZA65_RS07100at 1475.421 kb on - strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.424 kb on - strand, within DZA65_RS07100at 1475.424 kb on - strand, within DZA65_RS07100at 1475.434 kb on + strandat 1475.481 kb on + strandat 1475.482 kb on - strandat 1475.502 kb on - strandat 1475.516 kb on + strandat 1475.517 kb on - strandat 1475.561 kb on - strandat 1475.601 kb on - strandat 1475.601 kb on - strandat 1475.625 kb on + strandat 1475.822 kb on + strandat 1475.823 kb on - strandat 1475.854 kb on + strandat 1475.925 kb on - strand, within DZA65_RS07105at 1476.007 kb on + strand, within DZA65_RS07105at 1476.007 kb on + strand, within DZA65_RS07105at 1476.033 kb on + strand, within DZA65_RS07105at 1476.055 kb on - strand, within DZA65_RS07105at 1476.055 kb on - strand, within DZA65_RS07105at 1476.061 kb on - strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.065 kb on - strand, within DZA65_RS07105at 1476.065 kb on - strand, within DZA65_RS07105at 1476.077 kb on + strand, within DZA65_RS07105at 1476.077 kb on + strand, within DZA65_RS07105at 1476.163 kb on + strand, within DZA65_RS07105at 1476.192 kb on + strand, within DZA65_RS07105at 1476.193 kb on - strand, within DZA65_RS07105at 1476.193 kb on - strand, within DZA65_RS07105at 1476.198 kb on + strand, within DZA65_RS07105at 1476.199 kb on - strand, within DZA65_RS07105at 1476.217 kb on + strand, within DZA65_RS07105at 1476.222 kb on + strand, within DZA65_RS07105at 1476.223 kb on - strand, within DZA65_RS07105at 1476.223 kb on - strand, within DZA65_RS07105at 1476.252 kb on + strand, within DZA65_RS07105at 1476.253 kb on - strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.255 kb on - strand, within DZA65_RS07105at 1476.277 kb on - strand, within DZA65_RS07105at 1476.279 kb on + strand, within DZA65_RS07105at 1476.291 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.379 kb on + strand, within DZA65_RS07105at 1476.379 kb on + strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.409 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.412 kb on - strandat 1476.412 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,473,422 + DZA65_RS07095 0.79 -2.6
1,473,422 + DZA65_RS07095 0.79 +0.3
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +1.2
1,473,423 - DZA65_RS07095 0.79 -0.0
1,473,423 - DZA65_RS07095 0.79 +1.2
1,473,423 - DZA65_RS07095 0.79 -0.2
1,473,423 - DZA65_RS07095 0.79 +1.2
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +0.2
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +0.7
1,473,423 - DZA65_RS07095 0.79 +0.3
1,473,423 - DZA65_RS07095 0.79 +0.3
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +1.6
1,473,423 - DZA65_RS07095 0.79 -1.2
1,473,423 - DZA65_RS07095 0.79 -1.7
1,473,423 - DZA65_RS07095 0.79 -0.7
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 -0.0
1,473,423 - DZA65_RS07095 0.79 -0.6
1,473,435 - DZA65_RS07095 0.79 -0.4
1,473,435 - DZA65_RS07095 0.79 -1.4
1,473,444 - DZA65_RS07095 0.80 -0.6
1,473,508 + DZA65_RS07095 0.83 +1.9
1,473,509 - DZA65_RS07095 0.83 +0.6
1,473,516 - DZA65_RS07095 0.83 -0.9
1,473,516 - DZA65_RS07095 0.83 -0.4
1,473,820 - +1.5
1,473,822 + -3.1
1,473,822 + -0.0
1,473,823 - +0.3
1,473,823 - +0.8
1,473,829 - -0.4
1,473,843 + -1.0
1,473,844 - -2.0
1,473,881 - +0.6
1,473,963 - +0.5
1,474,153 - +0.4
1,474,186 + -1.4
1,474,187 - +0.2
1,474,221 + +0.4
1,474,222 - -2.0
1,474,222 - -0.4
1,474,224 + -0.6
1,474,252 + -0.6
1,474,252 + -0.0
1,474,265 + +0.8
1,474,270 - +0.2
1,474,270 - -0.7
1,474,281 + +3.3
1,474,282 - +1.6
1,474,497 - DZA65_RS07100 0.22 -0.3
1,474,580 - DZA65_RS07100 0.28 -0.6
1,474,580 - DZA65_RS07100 0.28 -0.7
1,474,583 - DZA65_RS07100 0.28 +0.8
1,474,612 + DZA65_RS07100 0.30 +1.4
1,474,669 + DZA65_RS07100 0.34 -1.4
1,474,669 + DZA65_RS07100 0.34 +0.4
1,474,718 - DZA65_RS07100 0.38 +0.6
1,474,755 + DZA65_RS07100 0.40 +0.5
1,474,755 + DZA65_RS07100 0.40 +0.3
1,474,755 + DZA65_RS07100 0.40 +1.2
1,474,755 + DZA65_RS07100 0.40 +1.6
1,474,755 + DZA65_RS07100 0.40 +0.6
1,474,756 - DZA65_RS07100 0.40 +0.1
1,474,756 - DZA65_RS07100 0.40 +0.3
1,474,756 - DZA65_RS07100 0.40 -0.0
1,474,756 - DZA65_RS07100 0.40 +0.1
1,474,757 + DZA65_RS07100 0.40 +0.1
1,474,757 + DZA65_RS07100 0.40 -0.0
1,474,757 + DZA65_RS07100 0.40 -0.9
1,474,758 - DZA65_RS07100 0.40 -0.4
1,474,758 - DZA65_RS07100 0.40 -0.6
1,474,773 + DZA65_RS07100 0.41 +0.2
1,474,774 - DZA65_RS07100 0.41 -0.4
1,474,780 + DZA65_RS07100 0.42 +0.3
1,474,862 - DZA65_RS07100 0.48 +1.7
1,474,862 - DZA65_RS07100 0.48 -2.7
1,474,862 - DZA65_RS07100 0.48 -1.0
1,474,919 + DZA65_RS07100 0.52 +0.3
1,474,919 + DZA65_RS07100 0.52 -2.2
1,474,920 - DZA65_RS07100 0.52 +1.1
1,474,930 + DZA65_RS07100 0.52 +1.6
1,474,931 - DZA65_RS07100 0.53 +1.6
1,474,931 - DZA65_RS07100 0.53 +0.6
1,474,940 - DZA65_RS07100 0.53 -1.0
1,475,023 + DZA65_RS07100 0.59 +0.8
1,475,044 + DZA65_RS07100 0.61 -0.1
1,475,044 + DZA65_RS07100 0.61 +1.4
1,475,045 - DZA65_RS07100 0.61 -0.0
1,475,045 - DZA65_RS07100 0.61 -1.1
1,475,048 - DZA65_RS07100 0.61 -0.4
1,475,072 + DZA65_RS07100 0.62 -0.2
1,475,072 + DZA65_RS07100 0.62 -3.0
1,475,072 + DZA65_RS07100 0.62 -0.3
1,475,072 + DZA65_RS07100 0.62 +0.9
1,475,072 + DZA65_RS07100 0.62 +0.4
1,475,072 + DZA65_RS07100 0.62 +0.9
1,475,072 + DZA65_RS07100 0.62 -1.4
1,475,073 - DZA65_RS07100 0.63 +0.8
1,475,073 - DZA65_RS07100 0.63 +0.3
1,475,073 - DZA65_RS07100 0.63 +1.3
1,475,073 - DZA65_RS07100 0.63 +0.3
1,475,074 + DZA65_RS07100 0.63 -0.6
1,475,075 - DZA65_RS07100 0.63 -1.2
1,475,075 - DZA65_RS07100 0.63 -0.0
1,475,114 + DZA65_RS07100 0.65 -1.6
1,475,114 + DZA65_RS07100 0.65 -2.2
1,475,114 + DZA65_RS07100 0.65 -3.0
1,475,115 - DZA65_RS07100 0.66 +0.4
1,475,152 + DZA65_RS07100 0.68 +0.5
1,475,152 + DZA65_RS07100 0.68 +1.1
1,475,173 + DZA65_RS07100 0.70 +2.2
1,475,173 + DZA65_RS07100 0.70 +0.2
1,475,174 - DZA65_RS07100 0.70 +1.8
1,475,174 - DZA65_RS07100 0.70 +1.8
1,475,254 + +0.6
1,475,254 + DZA65_RS07100 0.75 -0.0
1,475,279 - DZA65_RS07100 0.77 +1.8
1,475,323 - DZA65_RS07100 0.80 +1.8
1,475,335 + DZA65_RS07100 0.81 +0.4
1,475,335 + DZA65_RS07100 0.81 -0.1
1,475,336 - DZA65_RS07100 0.81 +0.6
1,475,336 - DZA65_RS07100 0.81 +2.6
1,475,420 + DZA65_RS07100 0.87 +0.4
1,475,421 - DZA65_RS07100 0.87 +1.2
1,475,423 + DZA65_RS07100 0.87 +0.8
1,475,423 + DZA65_RS07100 0.87 -0.1
1,475,423 + DZA65_RS07100 0.87 +0.1
1,475,423 + DZA65_RS07100 0.87 +0.8
1,475,424 - DZA65_RS07100 0.87 -1.5
1,475,424 - DZA65_RS07100 0.87 +0.4
1,475,434 + -1.4
1,475,481 + -1.0
1,475,482 - +0.8
1,475,502 - +0.8
1,475,516 + +2.2
1,475,517 - +0.6
1,475,561 - -1.0
1,475,601 - +1.4
1,475,601 - -0.9
1,475,625 + -0.9
1,475,822 + -1.7
1,475,823 - +0.8
1,475,854 + -0.6
1,475,925 - DZA65_RS07105 0.11 -1.3
1,476,007 + DZA65_RS07105 0.20 +1.4
1,476,007 + DZA65_RS07105 0.20 -0.3
1,476,033 + DZA65_RS07105 0.23 -0.0
1,476,055 - DZA65_RS07105 0.25 +0.3
1,476,055 - DZA65_RS07105 0.25 -0.3
1,476,061 - DZA65_RS07105 0.26 -2.6
1,476,064 + DZA65_RS07105 0.26 +1.6
1,476,064 + DZA65_RS07105 0.26 +0.4
1,476,064 + DZA65_RS07105 0.26 +0.2
1,476,065 - DZA65_RS07105 0.26 +0.6
1,476,065 - DZA65_RS07105 0.26 -0.5
1,476,077 + DZA65_RS07105 0.27 +0.8
1,476,077 + DZA65_RS07105 0.27 -1.5
1,476,163 + DZA65_RS07105 0.37 -2.6
1,476,192 + DZA65_RS07105 0.40 -1.1
1,476,193 - DZA65_RS07105 0.40 -0.1
1,476,193 - DZA65_RS07105 0.40 +0.9
1,476,198 + DZA65_RS07105 0.41 -0.5
1,476,199 - DZA65_RS07105 0.41 +0.7
1,476,217 + DZA65_RS07105 0.43 -1.7
1,476,222 + DZA65_RS07105 0.43 +1.6
1,476,223 - DZA65_RS07105 0.43 +0.7
1,476,223 - DZA65_RS07105 0.43 -1.0
1,476,252 + DZA65_RS07105 0.47 +0.6
1,476,253 - DZA65_RS07105 0.47 +0.3
1,476,254 + DZA65_RS07105 0.47 +1.2
1,476,254 + DZA65_RS07105 0.47 +0.6
1,476,254 + DZA65_RS07105 0.47 +1.3
1,476,255 - DZA65_RS07105 0.47 -1.4
1,476,277 - DZA65_RS07105 0.49 -0.5
1,476,279 + DZA65_RS07105 0.50 -0.8
1,476,291 + DZA65_RS07105 0.51 +0.2
1,476,357 + DZA65_RS07105 0.58 +0.9
1,476,357 + DZA65_RS07105 0.58 -0.3
1,476,357 + DZA65_RS07105 0.58 +0.2
1,476,357 + DZA65_RS07105 0.58 +0.5
1,476,379 + DZA65_RS07105 0.61 +0.1
1,476,379 + DZA65_RS07105 0.61 -0.2
1,476,380 - DZA65_RS07105 0.61 -0.3
1,476,380 - DZA65_RS07105 0.61 -1.7
1,476,380 - DZA65_RS07105 0.61 +0.5
1,476,380 - DZA65_RS07105 0.61 -0.4
1,476,409 + DZA65_RS07105 0.64 -2.2
1,476,411 + DZA65_RS07105 0.64 -1.7
1,476,411 + DZA65_RS07105 0.64 +0.3
1,476,411 + DZA65_RS07105 0.64 -0.9
1,476,411 + DZA65_RS07105 0.64 +0.4
1,476,412 - -2.0
1,476,412 - DZA65_RS07105 0.64 -0.2
1,476,422 - DZA65_RS07105 0.65 -0.2
1,476,422 - DZA65_RS07105 0.65 +1.6
1,476,422 - DZA65_RS07105 0.65 -0.8

Or see this region's nucleotide sequence