Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06415

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06410 and DZA65_RS06415 are separated by 262 nucleotidesDZA65_RS06415 and DZA65_RS06420 overlap by 1 nucleotides DZA65_RS06410: DZA65_RS06410 - HTH-type transcriptional regulator GalS, at 1,335,903 to 1,336,901 _RS06410 DZA65_RS06415: DZA65_RS06415 - phosphoribosylglycinamide formyltransferase, at 1,337,164 to 1,337,802 _RS06415 DZA65_RS06420: DZA65_RS06420 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,337,802 to 1,338,839 _RS06420 Position (kb) 1337 1338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1336.171 kb on + strand, within DZA65_RS06410at 1336.172 kb on - strand, within DZA65_RS06410at 1336.338 kb on + strand, within DZA65_RS06410at 1336.360 kb on + strand, within DZA65_RS06410at 1336.394 kb on + strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.395 kb on - strand, within DZA65_RS06410at 1336.532 kb on + strand, within DZA65_RS06410at 1336.532 kb on + strand, within DZA65_RS06410at 1336.532 kb on + strand, within DZA65_RS06410at 1336.532 kb on + strand, within DZA65_RS06410at 1336.532 kb on + strand, within DZA65_RS06410at 1336.533 kb on - strand, within DZA65_RS06410at 1336.533 kb on - strand, within DZA65_RS06410at 1336.533 kb on - strand, within DZA65_RS06410at 1336.533 kb on - strand, within DZA65_RS06410at 1336.533 kb on - strand, within DZA65_RS06410at 1336.544 kb on + strand, within DZA65_RS06410at 1336.609 kb on + strand, within DZA65_RS06410at 1336.610 kb on - strand, within DZA65_RS06410at 1336.673 kb on + strand, within DZA65_RS06410at 1336.721 kb on + strand, within DZA65_RS06410at 1336.795 kb on - strand, within DZA65_RS06410at 1336.895 kb on + strandat 1336.896 kb on - strandat 1336.896 kb on - strandat 1336.905 kb on + strandat 1336.906 kb on - strandat 1336.963 kb on + strandat 1337.026 kb on - strandat 1337.108 kb on - strandat 1337.108 kb on - strandat 1337.160 kb on - strandat 1337.160 kb on - strandat 1337.165 kb on + strandat 1337.165 kb on + strandat 1337.271 kb on - strand, within DZA65_RS06415at 1337.434 kb on - strand, within DZA65_RS06415at 1337.434 kb on - strand, within DZA65_RS06415at 1337.457 kb on - strand, within DZA65_RS06415at 1337.481 kb on + strand, within DZA65_RS06415at 1337.482 kb on - strand, within DZA65_RS06415at 1337.493 kb on + strand, within DZA65_RS06415at 1337.537 kb on + strand, within DZA65_RS06415at 1337.538 kb on - strand, within DZA65_RS06415at 1337.538 kb on - strand, within DZA65_RS06415at 1337.538 kb on - strand, within DZA65_RS06415at 1337.567 kb on + strand, within DZA65_RS06415at 1337.619 kb on - strand, within DZA65_RS06415at 1337.701 kb on + strand, within DZA65_RS06415at 1337.701 kb on + strand, within DZA65_RS06415at 1337.701 kb on + strand, within DZA65_RS06415at 1337.710 kb on - strand, within DZA65_RS06415at 1337.945 kb on + strand, within DZA65_RS06420at 1337.945 kb on + strand, within DZA65_RS06420at 1337.946 kb on - strand, within DZA65_RS06420at 1337.957 kb on - strand, within DZA65_RS06420at 1338.047 kb on + strand, within DZA65_RS06420at 1338.048 kb on - strand, within DZA65_RS06420at 1338.048 kb on - strand, within DZA65_RS06420at 1338.071 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.114 kb on + strand, within DZA65_RS06420at 1338.115 kb on - strand, within DZA65_RS06420at 1338.115 kb on - strand, within DZA65_RS06420at 1338.115 kb on - strand, within DZA65_RS06420at 1338.115 kb on - strand, within DZA65_RS06420at 1338.154 kb on + strand, within DZA65_RS06420at 1338.231 kb on + strandat 1338.232 kb on - strand, within DZA65_RS06420at 1338.232 kb on - strand, within DZA65_RS06420at 1338.232 kb on - strand, within DZA65_RS06420at 1338.232 kb on - strand, within DZA65_RS06420at 1338.232 kb on - strand, within DZA65_RS06420at 1338.380 kb on - strand, within DZA65_RS06420at 1338.380 kb on - strand, within DZA65_RS06420at 1338.380 kb on - strand, within DZA65_RS06420at 1338.380 kb on - strand, within DZA65_RS06420at 1338.380 kb on - strand, within DZA65_RS06420at 1338.394 kb on + strand, within DZA65_RS06420at 1338.394 kb on + strand, within DZA65_RS06420at 1338.394 kb on + strand, within DZA65_RS06420at 1338.394 kb on + strand, within DZA65_RS06420at 1338.394 kb on + strand, within DZA65_RS06420at 1338.395 kb on - strand, within DZA65_RS06420at 1338.395 kb on - strand, within DZA65_RS06420at 1338.395 kb on - strand, within DZA65_RS06420at 1338.514 kb on + strand, within DZA65_RS06420at 1338.517 kb on + strand, within DZA65_RS06420at 1338.517 kb on + strand, within DZA65_RS06420at 1338.517 kb on + strand, within DZA65_RS06420at 1338.518 kb on - strand, within DZA65_RS06420at 1338.518 kb on - strand, within DZA65_RS06420at 1338.518 kb on - strand, within DZA65_RS06420at 1338.596 kb on + strand, within DZA65_RS06420at 1338.676 kb on + strand, within DZA65_RS06420at 1338.726 kb on - strand, within DZA65_RS06420at 1338.726 kb on - strand, within DZA65_RS06420at 1338.726 kb on - strand, within DZA65_RS06420at 1338.753 kb on + strandat 1338.753 kb on + strandat 1338.765 kb on - strandat 1338.771 kb on + strandat 1338.772 kb on - strandat 1338.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,336,171 + DZA65_RS06410 0.27 +0.5
1,336,172 - DZA65_RS06410 0.27 -1.3
1,336,338 + DZA65_RS06410 0.44 +0.7
1,336,360 + DZA65_RS06410 0.46 +0.3
1,336,394 + DZA65_RS06410 0.49 -0.4
1,336,395 - DZA65_RS06410 0.49 +0.4
1,336,395 - DZA65_RS06410 0.49 -0.6
1,336,395 - DZA65_RS06410 0.49 +0.7
1,336,395 - DZA65_RS06410 0.49 +0.4
1,336,395 - DZA65_RS06410 0.49 -0.9
1,336,395 - DZA65_RS06410 0.49 +0.4
1,336,532 + DZA65_RS06410 0.63 +0.1
1,336,532 + DZA65_RS06410 0.63 +1.5
1,336,532 + DZA65_RS06410 0.63 -1.7
1,336,532 + DZA65_RS06410 0.63 -0.8
1,336,532 + DZA65_RS06410 0.63 +0.1
1,336,533 - DZA65_RS06410 0.63 +1.1
1,336,533 - DZA65_RS06410 0.63 +0.7
1,336,533 - DZA65_RS06410 0.63 +1.3
1,336,533 - DZA65_RS06410 0.63 -0.9
1,336,533 - DZA65_RS06410 0.63 -1.9
1,336,544 + DZA65_RS06410 0.64 -0.9
1,336,609 + DZA65_RS06410 0.71 +1.2
1,336,610 - DZA65_RS06410 0.71 +0.7
1,336,673 + DZA65_RS06410 0.77 +0.5
1,336,721 + DZA65_RS06410 0.82 -0.6
1,336,795 - DZA65_RS06410 0.89 +0.2
1,336,895 + +0.7
1,336,896 - +0.1
1,336,896 - +0.1
1,336,905 + -0.4
1,336,906 - +0.2
1,336,963 + -1.0
1,337,026 - -0.3
1,337,108 - +0.9
1,337,108 - +1.1
1,337,160 - -0.7
1,337,160 - +0.6
1,337,165 + +0.9
1,337,165 + -1.1
1,337,271 - DZA65_RS06415 0.17 -0.9
1,337,434 - DZA65_RS06415 0.42 -0.3
1,337,434 - DZA65_RS06415 0.42 -0.8
1,337,457 - DZA65_RS06415 0.46 -0.5
1,337,481 + DZA65_RS06415 0.50 -0.6
1,337,482 - DZA65_RS06415 0.50 -1.7
1,337,493 + DZA65_RS06415 0.51 -0.0
1,337,537 + DZA65_RS06415 0.58 -1.1
1,337,538 - DZA65_RS06415 0.59 -0.4
1,337,538 - DZA65_RS06415 0.59 -1.9
1,337,538 - DZA65_RS06415 0.59 -0.7
1,337,567 + DZA65_RS06415 0.63 -1.1
1,337,619 - DZA65_RS06415 0.71 -3.2
1,337,701 + DZA65_RS06415 0.84 +0.0
1,337,701 + DZA65_RS06415 0.84 +0.1
1,337,701 + DZA65_RS06415 0.84 +0.5
1,337,710 - DZA65_RS06415 0.85 -1.1
1,337,945 + DZA65_RS06420 0.14 -0.9
1,337,945 + DZA65_RS06420 0.14 -2.1
1,337,946 - DZA65_RS06420 0.14 -0.7
1,337,957 - DZA65_RS06420 0.15 -0.3
1,338,047 + DZA65_RS06420 0.24 -2.2
1,338,048 - DZA65_RS06420 0.24 -1.6
1,338,048 - DZA65_RS06420 0.24 -1.5
1,338,071 + DZA65_RS06420 0.26 -0.3
1,338,114 + DZA65_RS06420 0.30 -1.1
1,338,114 + DZA65_RS06420 0.30 -1.3
1,338,114 + DZA65_RS06420 0.30 -2.9
1,338,114 + DZA65_RS06420 0.30 -1.3
1,338,114 + DZA65_RS06420 0.30 -4.5
1,338,114 + DZA65_RS06420 0.30 -0.3
1,338,114 + DZA65_RS06420 0.30 -2.4
1,338,114 + DZA65_RS06420 0.30 -3.9
1,338,115 - DZA65_RS06420 0.30 -1.9
1,338,115 - DZA65_RS06420 0.30 -3.3
1,338,115 - DZA65_RS06420 0.30 -0.2
1,338,115 - DZA65_RS06420 0.30 -3.0
1,338,154 + DZA65_RS06420 0.34 -0.1
1,338,231 + -0.3
1,338,232 - DZA65_RS06420 0.41 -2.3
1,338,232 - DZA65_RS06420 0.41 -1.9
1,338,232 - DZA65_RS06420 0.41 -1.5
1,338,232 - DZA65_RS06420 0.41 +0.5
1,338,232 - DZA65_RS06420 0.41 -2.5
1,338,380 - DZA65_RS06420 0.56 -1.3
1,338,380 - DZA65_RS06420 0.56 -1.1
1,338,380 - DZA65_RS06420 0.56 -0.2
1,338,380 - DZA65_RS06420 0.56 -1.9
1,338,380 - DZA65_RS06420 0.56 -2.4
1,338,394 + DZA65_RS06420 0.57 -1.7
1,338,394 + DZA65_RS06420 0.57 -2.3
1,338,394 + DZA65_RS06420 0.57 +0.7
1,338,394 + DZA65_RS06420 0.57 +0.3
1,338,394 + DZA65_RS06420 0.57 -2.1
1,338,395 - DZA65_RS06420 0.57 -0.1
1,338,395 - DZA65_RS06420 0.57 -1.8
1,338,395 - DZA65_RS06420 0.57 -2.0
1,338,514 + DZA65_RS06420 0.69 -2.6
1,338,517 + DZA65_RS06420 0.69 -2.7
1,338,517 + DZA65_RS06420 0.69 -0.2
1,338,517 + DZA65_RS06420 0.69 -2.7
1,338,518 - DZA65_RS06420 0.69 -2.0
1,338,518 - DZA65_RS06420 0.69 -3.5
1,338,518 - DZA65_RS06420 0.69 -1.9
1,338,596 + DZA65_RS06420 0.76 -0.6
1,338,676 + DZA65_RS06420 0.84 -2.1
1,338,726 - DZA65_RS06420 0.89 -2.1
1,338,726 - DZA65_RS06420 0.89 -1.1
1,338,726 - DZA65_RS06420 0.89 -2.3
1,338,753 + -2.1
1,338,753 + -3.4
1,338,765 - -3.6
1,338,771 + -1.8
1,338,772 - -3.2
1,338,772 - -3.5

Or see this region's nucleotide sequence