Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05990

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,234,372	+		DZA65_RS05985	0.42	+0.1
1,234,372	+		DZA65_RS05985	0.42	-0.8
1,234,372	+		DZA65_RS05985	0.42	-0.6
1,234,373	-				-0.6
1,234,397	+		DZA65_RS05985	0.45	-0.2
1,234,397	+		DZA65_RS05985	0.45	-0.7
1,234,428	-		DZA65_RS05985	0.48	-2.1
1,234,593	-		DZA65_RS05985	0.65	-0.0
1,234,626	-		DZA65_RS05985	0.69	-0.5
1,234,635	-		DZA65_RS05985	0.70	+1.7
1,234,878	+				+0.7
1,234,902	-				+0.5
1,234,937	+				-1.9
1,234,948	+				+0.7
1,234,948	+				-1.6
1,234,998	-				+2.3
1,235,008	-				+0.4
1,235,008	-				-0.8
1,235,008	-				+0.4
1,235,030	+				+0.6
1,235,116	+				-0.1
1,235,117	-				+0.3
1,235,117	-				-0.9
1,235,117	-				-0.2
1,235,137	+				-0.9
1,235,143	+				-1.3
1,235,144	-				-0.3
1,235,144	-				-0.0
1,235,154	-				-0.5
1,235,156	+				+0.4
1,235,156	+				+0.1
1,235,156	+				+1.5
1,235,157	-				-0.9
1,235,157	-				+1.2
1,235,204	-				-1.0
1,235,222	+				-1.6
1,235,223	-				+0.3
1,235,231	+				+2.1
1,235,231	+				-0.8
1,235,239	+				+0.3
1,235,239	+				-2.5
1,235,239	+				+0.5
1,235,239	+				-2.3
1,235,240	-				+0.9
1,235,240	-				-0.9
1,235,240	-				-0.6
1,235,240	-				-1.0
1,235,240	-				+1.3
1,235,281	+				-2.8
1,235,284	+				+0.9
1,235,289	+				-2.5
1,235,290	-				+0.7
1,235,296	-				-1.3
1,235,299	+				+0.4
1,235,299	+				-1.3
1,235,300	-				-1.0
1,235,300	-				-0.7
1,235,308	+				+0.5
1,235,318	-				-2.1
1,235,334	+				-0.0
1,235,334	+				+0.8
1,235,334	+				-0.1
1,235,334	+				-0.0
1,235,334	+				-1.9
1,235,334	+				+0.0
1,235,334	+				-1.0
1,235,335	-				+1.7
1,235,335	-				+0.4
1,235,335	-				-0.5
1,235,335	-				-0.6
1,235,335	-				-0.7
1,235,335	-				-0.2
1,235,357	+				-0.5
1,235,357	+				-1.3
1,235,379	-				+1.1
1,235,379	-				-1.0
1,235,379	-				-0.9
1,235,379	-				+1.0
1,235,398	+				+0.8
1,235,398	+				+1.8
1,235,398	+				+0.9
1,235,398	+				-0.3
1,235,399	-				-0.8
1,235,399	-				-0.5
1,235,399	-				-0.3
1,235,399	-				+1.1
1,235,399	-				+0.0
1,235,419	+				-0.9
1,235,419	+				-0.3
1,235,420	-				+0.3
1,235,420	-				+0.2
1,235,421	+				+0.5
1,235,421	+				+0.3
1,235,550	+		DZA65_RS05990	0.13	-0.7
1,235,550	+		DZA65_RS05990	0.13	+0.7
1,235,551	-		DZA65_RS05990	0.13	-0.3
1,235,551	-		DZA65_RS05990	0.13	-1.3
1,235,552	+		DZA65_RS05990	0.13	-0.6
1,235,552	+		DZA65_RS05990	0.13	-2.6
1,235,552	+		DZA65_RS05990	0.13	-0.9
1,235,552	+		DZA65_RS05990	0.13	+1.4
1,235,552	+		DZA65_RS05990	0.13	-1.3
1,235,553	-				+1.0
1,235,672	+		DZA65_RS05990	0.21	-1.3
1,235,673	-		DZA65_RS05990	0.22	-1.7
1,235,690	+		DZA65_RS05990	0.23	-0.6
1,235,691	-		DZA65_RS05990	0.23	+0.7
1,235,691	-		DZA65_RS05990	0.23	+0.6
1,235,727	-		DZA65_RS05990	0.25	+0.7
1,235,806	+		DZA65_RS05990	0.31	-1.9
1,235,874	+		DZA65_RS05990	0.35	+1.0
1,235,874	+		DZA65_RS05990	0.35	-0.4
1,235,874	+		DZA65_RS05990	0.35	-1.6
1,235,874	+		DZA65_RS05990	0.35	-1.2
1,235,874	+		DZA65_RS05990	0.35	+0.8
1,235,875	-		DZA65_RS05990	0.35	-0.7
1,235,875	-		DZA65_RS05990	0.35	-1.3
1,235,875	-		DZA65_RS05990	0.35	+0.7
1,235,878	+		DZA65_RS05990	0.36	+0.5
1,235,878	+		DZA65_RS05990	0.36	-0.3
1,235,878	+		DZA65_RS05990	0.36	+0.0
1,235,878	+		DZA65_RS05990	0.36	-0.8
1,235,878	+		DZA65_RS05990	0.36	+0.5
1,235,878	+		DZA65_RS05990	0.36	+0.4
1,235,878	+		DZA65_RS05990	0.36	-0.1
1,235,878	+		DZA65_RS05990	0.36	-1.6
1,235,878	+		DZA65_RS05990	0.36	+0.3
1,235,878	+				+0.1
1,235,878	+		DZA65_RS05990	0.36	+0.8
1,235,878	+		DZA65_RS05990	0.36	-2.3
1,235,878	+		DZA65_RS05990	0.36	-1.0
1,235,878	+		DZA65_RS05990	0.36	+0.7
1,235,879	-		DZA65_RS05990	0.36	-0.6
1,235,879	-		DZA65_RS05990	0.36	+1.1
1,235,879	-		DZA65_RS05990	0.36	-0.6
1,235,879	-		DZA65_RS05990	0.36	-0.7
1,235,879	-		DZA65_RS05990	0.36	-1.3
1,235,879	-		DZA65_RS05990	0.36	-0.4
1,235,910	-		DZA65_RS05990	0.38	+0.2
1,236,046	+		DZA65_RS05990	0.47	+0.2
1,236,046	+		DZA65_RS05990	0.47	+0.5
1,236,047	-		DZA65_RS05990	0.47	-0.6
1,236,047	-		DZA65_RS05990	0.47	+0.6
1,236,047	-		DZA65_RS05990	0.47	-2.9
1,236,047	-		DZA65_RS05990	0.47	-1.1
1,236,047	-		DZA65_RS05990	0.47	-1.3
1,236,047	-		DZA65_RS05990	0.47	-0.4
1,236,047	-		DZA65_RS05990	0.47	-0.9
1,236,125	+		DZA65_RS05990	0.52	+0.6
1,236,125	+		DZA65_RS05990	0.52	+0.1
1,236,125	+		DZA65_RS05990	0.52	-1.2
1,236,126	-		DZA65_RS05990	0.52	-0.7
1,236,159	+		DZA65_RS05990	0.55	+1.0
1,236,160	-		DZA65_RS05990	0.55	+0.7
1,236,160	-		DZA65_RS05990	0.55	+1.0
1,236,160	-		DZA65_RS05990	0.55	-0.2
1,236,264	+		DZA65_RS05990	0.62	-0.9
1,236,264	+		DZA65_RS05990	0.62	-0.6
1,236,265	-		DZA65_RS05990	0.62	+0.4
1,236,265	-		DZA65_RS05990	0.62	-0.7
1,236,265	-		DZA65_RS05990	0.62	-1.2
1,236,296	+		DZA65_RS05990	0.64	-1.2
1,236,434	+		DZA65_RS05990	0.73	-1.0
1,236,435	-		DZA65_RS05990	0.73	-0.7
1,236,451	-		DZA65_RS05990	0.74	+0.4
1,236,505	+				+0.3
1,236,505	+		DZA65_RS05990	0.78	+0.7
1,236,505	+		DZA65_RS05990	0.78	-0.2
1,236,505	+		DZA65_RS05990	0.78	+1.7
1,236,505	+		DZA65_RS05990	0.78	-0.6
1,236,506	-		DZA65_RS05990	0.78	-1.1
1,236,506	-		DZA65_RS05990	0.78	+0.4
1,236,559	+		DZA65_RS05990	0.82	-0.1
1,236,597	+		DZA65_RS05990	0.84	-0.4
1,236,611	+		DZA65_RS05990	0.85	-2.1
1,236,650	+		DZA65_RS05990	0.88	+0.5
1,236,650	+		DZA65_RS05990	0.88	-0.9
1,236,650	+		DZA65_RS05990	0.88	+0.6
1,236,650	+		DZA65_RS05990	0.88	-0.3
1,236,650	+		DZA65_RS05990	0.88	-2.3
1,236,650	+		DZA65_RS05990	0.88	+0.1
1,236,650	+		DZA65_RS05990	0.88	+0.7
1,236,650	+		DZA65_RS05990	0.88	-0.5
1,236,650	+		DZA65_RS05990	0.88	+0.4
1,236,650	+		DZA65_RS05990	0.88	+0.4
1,236,650	+		DZA65_RS05990	0.88	-2.1
1,236,650	+		DZA65_RS05990	0.88	+0.2
1,236,651	-		DZA65_RS05990	0.88	-1.1
1,236,651	-		DZA65_RS05990	0.88	-0.4
1,236,651	-		DZA65_RS05990	0.88	+0.0
1,236,651	-		DZA65_RS05990	0.88	+1.7
1,236,651	-		DZA65_RS05990	0.88	+0.4
1,236,651	-		DZA65_RS05990	0.88	-0.1
1,236,651	-		DZA65_RS05990	0.88	-0.2
1,236,651	-		DZA65_RS05990	0.88	+1.8
1,236,651	-		DZA65_RS05990	0.88	+0.7
1,236,651	-		DZA65_RS05990	0.88	-1.9
1,236,694	+				+1.0
1,236,694	+				+0.1
1,236,694	+				+0.8
1,236,695	-				-2.1
1,236,727	-				-0.3
1,236,789	+				-0.9
1,236,789	+				-0.9
1,236,789	+				+0.0
1,236,789	+				+0.4
1,236,790	-				+0.0
1,236,825	+				-1.1
1,236,825	+				+0.7
1,236,826	-				+1.7
1,236,826	-				+0.1
1,236,876	+				+0.8
1,236,901	-				-1.6
1,236,901	-				+1.2
1,236,909	+				+1.6
1,236,909	+				+0.4
1,236,909	+				+0.5
1,236,909	+				+0.5
1,236,909	+				-0.0
1,236,910	-				-2.9
1,236,910	-				+1.3
1,236,910	-				-0.2
1,236,910	-				+1.0
1,236,910	-				-0.3
1,236,910	-				-0.6
1,236,910	-				+0.4
1,237,007	+		DZA65_RS05995	0.21	-0.6
1,237,009	+		DZA65_RS05995	0.22	+2.3
1,237,009	+		DZA65_RS05995	0.22	-0.5
1,237,009	+		DZA65_RS05995	0.22	+0.6
1,237,010	-		DZA65_RS05995	0.22	-0.6
1,237,010	-		DZA65_RS05995	0.22	-0.2
1,237,010	-		DZA65_RS05995	0.22	-0.9
1,237,010	-		DZA65_RS05995	0.22	+1.3
1,237,010	-		DZA65_RS05995	0.22	+1.4
1,237,010	-		DZA65_RS05995	0.22	+0.3
1,237,014	+		DZA65_RS05995	0.23	+1.2
1,237,014	+		DZA65_RS05995	0.23	+0.2
1,237,014	+		DZA65_RS05995	0.23	-1.0
1,237,015	-		DZA65_RS05995	0.23	-0.3
1,237,015	-				+2.1
1,237,016	+		DZA65_RS05995	0.23	-0.2
1,237,016	+		DZA65_RS05995	0.23	-0.6
1,237,016	+		DZA65_RS05995	0.23	-0.0
1,237,016	+		DZA65_RS05995	0.23	+1.4
1,237,016	+		DZA65_RS05995	0.23	+0.5
1,237,016	+		DZA65_RS05995	0.23	-0.4
1,237,016	+		DZA65_RS05995	0.23	+0.0
1,237,016	+		DZA65_RS05995	0.23	-1.5
1,237,016	+		DZA65_RS05995	0.23	+0.7
1,237,016	+		DZA65_RS05995	0.23	+1.4
1,237,016	+		DZA65_RS05995	0.23	-0.3
1,237,016	+		DZA65_RS05995	0.23	-2.3
1,237,016	+		DZA65_RS05995	0.23	+1.9
1,237,016	+		DZA65_RS05995	0.23	-0.9
1,237,016	+		DZA65_RS05995	0.23	-1.3
1,237,016	+		DZA65_RS05995	0.23	-1.6
1,237,017	-		DZA65_RS05995	0.23	-1.0
1,237,017	-		DZA65_RS05995	0.23	+0.2
1,237,017	-		DZA65_RS05995	0.23	+1.1
1,237,017	-		DZA65_RS05995	0.23	+0.4
1,237,017	-		DZA65_RS05995	0.23	+0.3
1,237,017	-		DZA65_RS05995	0.23	-0.4
1,237,017	-		DZA65_RS05995	0.23	+1.0
1,237,017	-		DZA65_RS05995	0.23	-0.6
1,237,077	+		DZA65_RS05995	0.34	+0.4
1,237,092	+		DZA65_RS05995	0.36	-0.3
1,237,093	-		DZA65_RS05995	0.36	+0.1
1,237,184	+		DZA65_RS05995	0.52	-1.6
1,237,184	+		DZA65_RS05995	0.52	+1.6
1,237,185	-		DZA65_RS05995	0.52	-1.5
1,237,185	-		DZA65_RS05995	0.52	-0.3
1,237,185	-		DZA65_RS05995	0.52	+0.2
1,237,185	-		DZA65_RS05995	0.52	+1.0
1,237,259	-		DZA65_RS05995	0.65	-0.6
1,237,342	+		DZA65_RS05995	0.79	+0.1
1,237,401	+		DZA65_RS05995	0.89	-1.4
1,237,401	+		DZA65_RS05995	0.89	-0.6
1,237,401	+		DZA65_RS05995	0.89	+0.8
1,237,402	-		DZA65_RS05995	0.90	-0.2
1,237,456	+				+0.3
1,237,497	+				-0.7
1,237,503	+				-0.6
1,237,503	+				+1.3
1,237,503	+				-0.7
1,237,503	+				-0.3
1,237,504	-				-0.1
1,237,504	-				-1.2
1,237,504	-				+0.1
1,237,504	-				-0.7
1,237,504	-				+0.6
1,237,504	-				+2.3
1,237,504	-				+0.0
1,237,504	-				+1.3
1,237,516	+				-1.5
1,237,516	+				-1.2
1,237,516	+				+0.7
1,237,516	+				+0.5
1,237,516	+				-1.6
1,237,516	+				+0.3
1,237,516	+				-0.4
1,237,517	-				+0.7
1,237,517	-				+0.5
1,237,517	-				+0.1
1,237,517	-				-0.0
1,237,517	-				+0.5
1,237,517	-				-0.3
1,237,517	-				+1.0
1,237,517	-				+0.7
1,237,517	-				-1.6
1,237,517	-				+0.7
1,237,517	-				-0.1
1,237,590	+				+1.3
1,237,591	-				+0.7
1,237,591	-				+0.3
1,237,628	+				+0.3
1,237,687	+				-0.8
1,237,747	-				-3.1
1,237,747	-				-0.8
1,237,754	+				-0.4
1,237,754	+				+1.3
1,237,803	+				-0.6
1,237,803	+				-2.9
1,237,804	-				+0.3
1,237,804	-				-1.3
1,237,804	-				-0.2
1,237,804	-				-1.3