Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05505

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05495 and DZA65_RS05500 are separated by 138 nucleotidesDZA65_RS05500 and DZA65_RS05505 are separated by 3 nucleotidesDZA65_RS05505 and DZA65_RS05510 are separated by 148 nucleotidesDZA65_RS05510 and DZA65_RS05515 are separated by 3 nucleotides DZA65_RS05495: DZA65_RS05495 - outer membrane protein assembly factor BamA, at 1,130,224 to 1,132,641 _RS05495 DZA65_RS05500: DZA65_RS05500 - molecular chaperone Skp, at 1,132,780 to 1,133,277 _RS05500 DZA65_RS05505: DZA65_RS05505 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,133,281 to 1,134,303 _RS05505 DZA65_RS05510: DZA65_RS05510 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,134,452 to 1,134,907 _RS05510 DZA65_RS05515: DZA65_RS05515 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,134,911 to 1,135,699 _RS05515 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -1 0 1 2 3at 1132.639 kb on + strandat 1132.639 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.643 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.677 kb on + strandat 1132.731 kb on + strandat 1132.757 kb on + strandat 1132.757 kb on + strandat 1132.757 kb on + strandat 1132.761 kb on + strandat 1132.761 kb on + strandat 1132.761 kb on + strandat 1132.808 kb on + strandat 1132.962 kb on + strand, within DZA65_RS05500at 1132.962 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.013 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500at 1133.224 kb on + strand, within DZA65_RS05500at 1134.285 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,132,639 + -0.5
1,132,639 + -0.6
1,132,643 + -0.3
1,132,643 + -0.9
1,132,643 + -0.4
1,132,643 + +0.3
1,132,643 + -0.3
1,132,643 + -1.0
1,132,677 + +1.2
1,132,677 + -0.6
1,132,677 + +0.6
1,132,677 + +0.5
1,132,731 + -0.9
1,132,757 + -1.2
1,132,757 + +0.7
1,132,757 + +0.3
1,132,761 + -0.3
1,132,761 + -0.7
1,132,761 + +0.8
1,132,808 + +1.7
1,132,962 + DZA65_RS05500 0.37 +2.3
1,132,962 + DZA65_RS05500 0.37 +2.7
1,133,013 + DZA65_RS05500 0.47 +2.1
1,133,013 + DZA65_RS05500 0.47 +2.4
1,133,013 + DZA65_RS05500 0.47 +2.3
1,133,224 + DZA65_RS05500 0.89 +3.1
1,133,224 + DZA65_RS05500 0.89 +2.0
1,133,224 + DZA65_RS05500 0.89 +1.1
1,134,285 + +1.6
1,134,336 + -1.1
1,134,336 + +0.1
1,134,336 + -1.0
1,134,336 + +0.3
1,134,336 + -1.6
1,134,378 + +0.2
1,134,378 + +0.1
1,134,378 + -0.3
1,134,378 + -1.5
1,134,378 + -0.4
1,134,415 + -0.3

Or see this region's nucleotide sequence