Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04900

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,014,466	+		DZA65_RS04890	0.46	+0.7
1,014,484	-		DZA65_RS04890	0.49	-0.4
1,014,488	+		DZA65_RS04890	0.50	-1.0
1,014,488	+		DZA65_RS04890	0.50	+0.2
1,014,488	+		DZA65_RS04890	0.50	-0.3
1,014,489	-		DZA65_RS04890	0.50	-1.4
1,014,489	-		DZA65_RS04890	0.50	+0.7
1,014,489	-		DZA65_RS04890	0.50	+1.3
1,014,489	-		DZA65_RS04890	0.50	-0.8
1,014,498	-		DZA65_RS04890	0.52	+0.6
1,014,498	-		DZA65_RS04890	0.52	+1.1
1,014,535	+		DZA65_RS04890	0.59	-1.5
1,014,535	+		DZA65_RS04890	0.59	-0.4
1,014,535	+		DZA65_RS04890	0.59	-1.0
1,014,535	+		DZA65_RS04890	0.59	-1.0
1,014,536	-		DZA65_RS04890	0.60	+1.6
1,014,536	-		DZA65_RS04890	0.60	-0.8
1,014,536	-		DZA65_RS04890	0.60	+2.3
1,014,536	-		DZA65_RS04890	0.60	+0.6
1,014,556	+		DZA65_RS04890	0.63	+0.4
1,014,556	+		DZA65_RS04890	0.63	-0.2
1,014,560	-		DZA65_RS04890	0.64	+0.3
1,014,584	-		DZA65_RS04890	0.69	+0.9
1,014,608	-		DZA65_RS04890	0.74	-0.3
1,014,613	+		DZA65_RS04890	0.75	-1.3
1,014,614	-		DZA65_RS04890	0.75	+0.2
1,014,614	-		DZA65_RS04890	0.75	+0.5
1,014,614	-		DZA65_RS04890	0.75	-0.7
1,014,614	-		DZA65_RS04890	0.75	+0.6
1,014,616	+		DZA65_RS04890	0.75	-0.0
1,014,616	+		DZA65_RS04890	0.75	-0.6
1,014,616	+		DZA65_RS04890	0.75	+0.7
1,014,617	-		DZA65_RS04890	0.76	-0.1
1,014,617	-		DZA65_RS04890	0.76	-0.2
1,014,617	-		DZA65_RS04890	0.76	-0.5
1,014,618	+		DZA65_RS04890	0.76	-1.6
1,014,618	+		DZA65_RS04890	0.76	+1.5
1,014,619	-		DZA65_RS04890	0.76	+0.7
1,014,619	-		DZA65_RS04890	0.76	+0.1
1,014,619	-		DZA65_RS04890	0.76	+0.1
1,014,676	+		DZA65_RS04890	0.87	+1.2
1,014,676	+		DZA65_RS04890	0.87	+0.7
1,014,677	-		DZA65_RS04890	0.88	+1.2
1,014,677	-		DZA65_RS04890	0.88	+0.7
1,014,677	-		DZA65_RS04890	0.88	+0.3
1,014,853	+				-1.3
1,014,853	+				+0.2
1,014,854	-				-0.6
1,014,854	-				+0.1
1,014,877	-				-1.8
1,014,877	-				+0.7
1,014,877	-				-0.1
1,014,877	-				+0.6
1,014,877	-				-0.6
1,014,877	-				+0.4
1,014,877	-				+0.1
1,014,877	-				-0.3
1,014,877	-				-0.2
1,014,879	-				-1.0
1,014,879	-				+1.3
1,014,879	-				-0.8
1,014,879	-				+0.7
1,014,879	-				+0.4
1,014,879	-				+0.1
1,014,879	-				-0.4
1,015,047	-		DZA65_RS04895	0.39	+0.5
1,015,047	-		DZA65_RS04895	0.39	-0.0
1,015,069	-		DZA65_RS04895	0.44	-0.3
1,015,108	+		DZA65_RS04895	0.53	-1.6
1,015,108	+		DZA65_RS04895	0.53	+1.5
1,015,108	+		DZA65_RS04895	0.53	+0.2
1,015,108	+		DZA65_RS04895	0.53	+0.3
1,015,109	-		DZA65_RS04895	0.53	-1.8
1,015,109	-		DZA65_RS04895	0.53	+0.5
1,015,178	+		DZA65_RS04895	0.69	-0.7
1,015,178	+		DZA65_RS04895	0.69	+1.5
1,015,178	+		DZA65_RS04895	0.69	-0.4
1,015,178	+		DZA65_RS04895	0.69	-1.4
1,015,179	-		DZA65_RS04895	0.69	+0.7
1,015,179	-		DZA65_RS04895	0.69	-0.1
1,015,207	+		DZA65_RS04895	0.76	-0.1
1,015,207	+		DZA65_RS04895	0.76	+0.7
1,015,207	+		DZA65_RS04895	0.76	+0.7
1,015,207	+		DZA65_RS04895	0.76	-2.1
1,015,256	+		DZA65_RS04895	0.87	-1.3
1,015,257	-				+1.3
1,015,309	-				-1.6
1,015,313	+				-0.7
1,015,313	+				+0.3
1,015,314	-				-0.6
1,015,314	-				+0.1
1,015,318	+				+0.7
1,015,318	+				-0.1
1,015,366	+				-1.3
1,015,367	-				-1.3
1,015,367	-				-0.4
1,015,370	+				+1.4
1,015,371	-				+1.1
1,015,380	-				-0.5
1,015,392	+				+0.4
1,015,411	+				+1.5
1,015,411	+				+0.9
1,015,412	-				-1.1
1,015,551	-				-0.2
1,015,557	+				+0.3
1,015,557	+				+1.1
1,015,557	+				-0.2
1,015,557	+				+1.3
1,015,557	+				-0.6
1,015,557	+				+0.5
1,015,557	+				+0.6
1,015,557	+				+1.4
1,015,558	-				-0.3
1,015,558	-				-1.8
1,015,558	-				-1.2
1,015,558	-				-0.3
1,015,558	-				-0.3
1,015,558	-				-0.0
1,015,561	+				-0.1
1,015,561	+				+0.4
1,015,561	+				+0.3
1,015,561	+				+0.1
1,015,561	+				-0.3
1,015,561	+				+0.4
1,015,561	+				-0.6
1,015,562	-				+1.2
1,015,562	-				+0.2
1,015,562	-				-0.8
1,015,562	-				-0.6
1,015,562	-				-0.3
1,015,588	+		DZA65_RS04900	0.12	+1.0
1,015,597	+		DZA65_RS04900	0.12	+0.2
1,015,597	+		DZA65_RS04900	0.12	+0.0
1,015,598	-		DZA65_RS04900	0.12	+0.3
1,015,652	+		DZA65_RS04900	0.17	-1.6
1,015,653	-		DZA65_RS04900	0.17	-2.3
1,015,653	-		DZA65_RS04900	0.17	+0.3
1,015,660	-		DZA65_RS04900	0.17	-0.6
1,015,730	-		DZA65_RS04900	0.23	+0.9
1,015,804	-		DZA65_RS04900	0.29	-1.4
1,015,899	-		DZA65_RS04900	0.37	-0.8
1,015,928	+		DZA65_RS04900	0.40	+0.0
1,015,929	-		DZA65_RS04900	0.40	-1.1
1,015,973	+		DZA65_RS04900	0.44	+0.0
1,016,086	-		DZA65_RS04900	0.53	+0.6
1,016,086	-		DZA65_RS04900	0.53	-0.7
1,016,086	-		DZA65_RS04900	0.53	-0.1
1,016,131	-		DZA65_RS04900	0.57	-0.1
1,016,152	+		DZA65_RS04900	0.58	+0.3
1,016,152	+		DZA65_RS04900	0.58	+0.4
1,016,152	+		DZA65_RS04900	0.58	-1.3
1,016,153	-		DZA65_RS04900	0.59	-0.8
1,016,155	-		DZA65_RS04900	0.59	-1.4
1,016,178	+		DZA65_RS04900	0.61	-0.1
1,016,178	+		DZA65_RS04900	0.61	-0.5
1,016,178	+		DZA65_RS04900	0.61	-0.6
1,016,179	-		DZA65_RS04900	0.61	+0.1
1,016,179	-		DZA65_RS04900	0.61	-1.6
1,016,228	+		DZA65_RS04900	0.65	-0.8
1,016,228	+		DZA65_RS04900	0.65	-2.8
1,016,228	+		DZA65_RS04900	0.65	-1.1
1,016,228	+		DZA65_RS04900	0.65	+1.3
1,016,228	+		DZA65_RS04900	0.65	+1.1
1,016,228	+		DZA65_RS04900	0.65	-0.2
1,016,228	+		DZA65_RS04900	0.65	-1.3
1,016,228	+		DZA65_RS04900	0.65	-2.6
1,016,229	-		DZA65_RS04900	0.65	+0.7
1,016,229	-		DZA65_RS04900	0.65	-0.3
1,016,229	-		DZA65_RS04900	0.65	-0.3
1,016,229	-		DZA65_RS04900	0.65	-0.7
1,016,229	-		DZA65_RS04900	0.65	-0.7
1,016,229	-		DZA65_RS04900	0.65	-0.5
1,016,232	+		DZA65_RS04900	0.65	+0.9
1,016,233	-		DZA65_RS04900	0.65	-1.5
1,016,233	-		DZA65_RS04900	0.65	-0.7
1,016,233	-		DZA65_RS04900	0.65	+0.7
1,016,233	-		DZA65_RS04900	0.65	-0.3
1,016,289	+		DZA65_RS04900	0.70	+1.3
1,016,290	-				+0.4
1,016,290	-		DZA65_RS04900	0.70	+0.7
1,016,290	-		DZA65_RS04900	0.70	+0.4
1,016,303	+		DZA65_RS04900	0.71	+0.7
1,016,303	+		DZA65_RS04900	0.71	-1.4
1,016,304	-		DZA65_RS04900	0.71	-0.4
1,016,304	-		DZA65_RS04900	0.71	+2.5
1,016,451	+		DZA65_RS04900	0.83	-0.5
1,016,464	-		DZA65_RS04900	0.84	-1.1
1,016,686	+				-1.1
1,016,686	+				-0.5
1,016,686	+				-1.2
1,016,686	+				-0.4
1,016,686	+				+2.7
1,016,687	-				+1.2
1,016,687	-				+1.7
1,016,687	-				-1.8
1,016,730	-		DZA65_RS04905	0.18	-2.1
1,016,730	-		DZA65_RS04905	0.18	-0.8
1,016,750	+		DZA65_RS04905	0.23	-0.9
1,016,750	+		DZA65_RS04905	0.23	-1.0
1,016,751	-		DZA65_RS04905	0.23	+2.0
1,016,751	-		DZA65_RS04905	0.23	+1.1
1,016,751	-		DZA65_RS04905	0.23	+1.4
1,016,751	-		DZA65_RS04905	0.23	+0.2
1,016,752	+		DZA65_RS04905	0.23	-2.4
1,016,752	+		DZA65_RS04905	0.23	+0.7
1,016,800	-		DZA65_RS04905	0.34	-0.3
1,016,800	-		DZA65_RS04905	0.34	+0.7
1,017,077	+				+1.1
1,017,077	+				+0.5
1,017,086	+				-0.6
1,017,103	+				-0.4
1,017,103	+				+0.2
1,017,164	+				-1.3
1,017,164	+				+0.7
1,017,164	+				+0.2
1,017,164	+				-1.1
1,017,164	+				+0.0
1,017,164	+				+1.1
1,017,165	-				-0.8
1,017,165	-				+2.3
1,017,205	+				-3.8
1,017,205	+				-0.8
1,017,205	+				+1.0
1,017,205	+				+0.7
1,017,205	+				+0.3
1,017,205	+				-0.5
1,017,205	+				-0.1
1,017,205	+				+0.3
1,017,205	+				+0.1
1,017,205	+				-1.0
1,017,205	+				-0.3
1,017,205	+				+1.7
1,017,205	+				-0.7
1,017,206	-				+0.3
1,017,206	-				-0.6
1,017,206	-				-0.0
1,017,206	-				+0.0
1,017,206	-				-0.4
1,017,206	-				-1.6
1,017,206	-				+0.3
1,017,206	-				-0.2
1,017,209	+				+0.4
1,017,210	-				+0.2
1,017,210	-				-0.1
1,017,245	+				+2.5
1,017,266	+				+0.6
1,017,350	+		DZA65_RS04910	0.15	-0.1
1,017,350	+		DZA65_RS04910	0.15	+2.5
1,017,350	+		DZA65_RS04910	0.15	-0.4
1,017,350	+		DZA65_RS04910	0.15	+0.2
1,017,351	-		DZA65_RS04910	0.15	-1.7
1,017,351	-		DZA65_RS04910	0.15	+0.9
1,017,397	+		DZA65_RS04910	0.18	+1.8
1,017,397	+		DZA65_RS04910	0.18	-0.3
1,017,404	-		DZA65_RS04910	0.18	+0.6
1,017,422	+		DZA65_RS04910	0.19	+0.7
1,017,422	+		DZA65_RS04910	0.19	-1.8
1,017,422	+		DZA65_RS04910	0.19	-1.0
1,017,422	+		DZA65_RS04910	0.19	+0.4
1,017,422	+		DZA65_RS04910	0.19	-0.6
1,017,423	-				-0.8
1,017,423	-		DZA65_RS04910	0.19	+1.0
1,017,425	+		DZA65_RS04910	0.19	+0.9
1,017,455	+		DZA65_RS04910	0.21	-0.8
1,017,456	-		DZA65_RS04910	0.21	+0.1
1,017,498	+		DZA65_RS04910	0.24	-0.8
1,017,498	+		DZA65_RS04910	0.24	+0.0
1,017,498	+		DZA65_RS04910	0.24	-1.6
1,017,498	+		DZA65_RS04910	0.24	-0.3
1,017,498	+		DZA65_RS04910	0.24	+0.6
1,017,498	+		DZA65_RS04910	0.24	-0.1
1,017,498	+		DZA65_RS04910	0.24	-0.3
1,017,498	+		DZA65_RS04910	0.24	+0.4
1,017,498	+		DZA65_RS04910	0.24	+0.3
1,017,499	-		DZA65_RS04910	0.24	+1.5
1,017,499	-		DZA65_RS04910	0.24	+0.3
1,017,499	-		DZA65_RS04910	0.24	+0.3
1,017,499	-		DZA65_RS04910	0.24	+0.8
1,017,500	+		DZA65_RS04910	0.24	+0.1
1,017,500	+		DZA65_RS04910	0.24	-0.6
1,017,500	+		DZA65_RS04910	0.24	+1.3
1,017,500	+		DZA65_RS04910	0.24	+0.5
1,017,500	+		DZA65_RS04910	0.24	+0.0
1,017,500	+		DZA65_RS04910	0.24	+0.1
1,017,500	+		DZA65_RS04910	0.24	+1.9
1,017,500	+		DZA65_RS04910	0.24	+1.7
1,017,501	-		DZA65_RS04910	0.24	-1.1
1,017,501	-		DZA65_RS04910	0.24	+0.7
1,017,501	-		DZA65_RS04910	0.24	-1.8
1,017,501	-		DZA65_RS04910	0.24	-2.3
1,017,501	-		DZA65_RS04910	0.24	-0.7
1,017,501	-		DZA65_RS04910	0.24	-1.8
1,017,501	-		DZA65_RS04910	0.24	-0.4
1,017,571	+		DZA65_RS04910	0.28	-1.4
1,017,578	+		DZA65_RS04910	0.28	+1.9
1,017,579	-		DZA65_RS04910	0.28	+0.8
1,017,579	-		DZA65_RS04910	0.28	+0.2
1,017,579	-		DZA65_RS04910	0.28	+1.7
1,017,579	-		DZA65_RS04910	0.28	-2.3