Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03545 and DZA65_RS03555 are separated by 573 nucleotides DZA65_RS03555 and DZA65_RS03560 overlap by 1 nucleotides DZA65_RS03560 and DZA65_RS03565 are separated by 194 nucleotides DZA65_RS03565 and DZA65_RS03570 overlap by 10 nucleotides
DZA65_RS03545: DZA65_RS03545 - hypothetical protein, at 747,744 to 748,634
_RS03545
DZA65_RS03555: DZA65_RS03555 - hypothetical protein, at 749,208 to 749,480
_RS03555
DZA65_RS03560: DZA65_RS03560 - hypothetical protein, at 749,480 to 749,899
_RS03560
DZA65_RS03565: DZA65_RS03565 - HNH endonuclease, at 750,094 to 750,591
_RS03565
DZA65_RS03570: DZA65_RS03570 - hypothetical protein, at 750,582 to 750,998
_RS03570
Position (kb) 749
750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 748.487 kb on + strand, within DZA65_RS03545 at 748.488 kb on - strand, within DZA65_RS03545 at 748.501 kb on + strand, within DZA65_RS03545 at 748.501 kb on + strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.505 kb on + strand, within DZA65_RS03545 at 748.506 kb on - strand, within DZA65_RS03545 at 748.525 kb on + strand, within DZA65_RS03545 at 748.525 kb on + strand, within DZA65_RS03545 at 748.526 kb on - strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.538 kb on - strand, within DZA65_RS03545 at 748.538 kb on - strand, within DZA65_RS03545 at 748.579 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.613 kb on - strand at 748.613 kb on - strand at 748.632 kb on + strand at 748.632 kb on + strand at 748.632 kb on + strand at 748.633 kb on - strand at 748.633 kb on - strand at 748.633 kb on - strand at 748.643 kb on + strand at 748.643 kb on + strand at 748.643 kb on + strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.735 kb on - strand at 748.746 kb on + strand at 748.746 kb on + strand at 748.746 kb on + strand at 748.747 kb on - strand at 748.761 kb on + strand at 748.762 kb on - strand at 748.776 kb on + strand at 748.792 kb on - strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.838 kb on - strand at 748.838 kb on - strand at 748.869 kb on + strand at 748.869 kb on + strand at 748.879 kb on - strand at 748.879 kb on - strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.940 kb on + strand at 748.940 kb on + strand at 748.940 kb on + strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.959 kb on + strand at 748.966 kb on + strand at 748.985 kb on + strand at 748.985 kb on + strand at 749.018 kb on + strand at 749.018 kb on + strand at 749.018 kb on + strand at 749.019 kb on - strand at 749.051 kb on + strand at 749.054 kb on + strand at 749.055 kb on - strand at 749.055 kb on - strand at 749.055 kb on - strand at 749.082 kb on + strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.111 kb on - strand at 749.111 kb on - strand at 749.111 kb on - strand at 749.145 kb on + strand at 749.145 kb on + strand at 749.145 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.181 kb on + strand at 749.181 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.194 kb on - strand at 749.194 kb on - strand at 749.194 kb on - strand at 749.195 kb on + strand at 749.195 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.274 kb on - strand, within DZA65_RS03555 at 749.321 kb on + strand, within DZA65_RS03555 at 749.321 kb on + strand, within DZA65_RS03555 at 749.322 kb on - strand, within DZA65_RS03555 at 749.359 kb on + strand, within DZA65_RS03555 at 749.360 kb on - strand, within DZA65_RS03555 at 749.363 kb on + strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.441 kb on - strand, within DZA65_RS03555 at 749.486 kb on + strand at 749.486 kb on + strand at 749.487 kb on - strand at 749.505 kb on + strand at 749.506 kb on - strand at 749.509 kb on + strand at 749.509 kb on + strand at 749.510 kb on - strand at 749.510 kb on - strand at 749.517 kb on + strand at 749.517 kb on + strand at 749.518 kb on - strand at 749.518 kb on - strand at 749.518 kb on - strand at 749.566 kb on + strand, within DZA65_RS03560 at 749.597 kb on - strand, within DZA65_RS03560 at 749.597 kb on - strand, within DZA65_RS03560 at 749.602 kb on + strand, within DZA65_RS03560 at 749.602 kb on + strand, within DZA65_RS03560 at 749.625 kb on + strand, within DZA65_RS03560 at 749.626 kb on - strand, within DZA65_RS03560 at 749.635 kb on - strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.699 kb on + strand, within DZA65_RS03560 at 749.718 kb on + strand, within DZA65_RS03560 at 749.718 kb on + strand, within DZA65_RS03560 at 749.771 kb on - strand, within DZA65_RS03560 at 749.897 kb on + strand at 749.923 kb on + strand at 749.932 kb on + strand at 749.933 kb on - strand at 749.933 kb on - strand at 749.952 kb on + strand at 749.964 kb on + strand at 750.003 kb on + strand at 750.044 kb on - strand at 750.050 kb on + strand at 750.259 kb on + strand, within DZA65_RS03565 at 750.274 kb on - strand, within DZA65_RS03565 at 750.276 kb on + strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand at 750.318 kb on + strand, within DZA65_RS03565 at 750.319 kb on - strand, within DZA65_RS03565 at 750.340 kb on - strand, within DZA65_RS03565 at 750.348 kb on + strand, within DZA65_RS03565 at 750.372 kb on - strand, within DZA65_RS03565 at 750.424 kb on - strand, within DZA65_RS03565 at 750.442 kb on - strand, within DZA65_RS03565 at 750.455 kb on + strand, within DZA65_RS03565 at 750.466 kb on + strand, within DZA65_RS03565 at 750.589 kb on + strand at 750.602 kb on + strand at 750.603 kb on - strand at 750.701 kb on - strand, within DZA65_RS03570 at 750.704 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.867 kb on + strand, within DZA65_RS03570 at 750.868 kb on - strand, within DZA65_RS03570 at 750.871 kb on + strand, within DZA65_RS03570 at 750.872 kb on - strand, within DZA65_RS03570 at 750.874 kb on + strand, within DZA65_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 748,487 + DZA65_RS03545 0.83 -1.1 748,488 - DZA65_RS03545 0.84 +1.4 748,501 + DZA65_RS03545 0.85 -1.1 748,501 + DZA65_RS03545 0.85 +1.1 748,502 - DZA65_RS03545 0.85 +0.5 748,502 - DZA65_RS03545 0.85 +0.7 748,502 - DZA65_RS03545 0.85 +0.7 748,505 + DZA65_RS03545 0.85 -0.4 748,506 - DZA65_RS03545 0.86 -1.3 748,525 + DZA65_RS03545 0.88 -0.0 748,525 + DZA65_RS03545 0.88 +0.3 748,526 - DZA65_RS03545 0.88 +0.3 748,537 + DZA65_RS03545 0.89 -0.4 748,537 + DZA65_RS03545 0.89 -1.0 748,537 + DZA65_RS03545 0.89 -0.0 748,538 - DZA65_RS03545 0.89 +2.6 748,538 - DZA65_RS03545 0.89 -1.7 748,579 + -0.0 748,612 + -0.1 748,612 + +0.3 748,612 + +1.3 748,612 + +0.6 748,613 - -0.2 748,613 - +0.5 748,632 + -0.6 748,632 + +0.3 748,632 + +1.4 748,633 - +0.2 748,633 - +0.4 748,633 - -1.6 748,643 + +0.4 748,643 + +0.0 748,643 + +0.9 748,644 - +0.9 748,644 - +0.2 748,644 - -0.1 748,644 - +0.3 748,678 - +1.1 748,678 - -0.1 748,678 - -1.1 748,678 - -0.1 748,678 - +0.7 748,735 - +0.0 748,746 + -0.1 748,746 + -1.4 748,746 + +0.9 748,747 - +0.2 748,761 + -0.0 748,762 - +0.4 748,776 + -1.2 748,792 - -1.1 748,837 + +0.2 748,837 + -2.3 748,837 + +1.5 748,837 + +0.0 748,837 + -0.0 748,837 + -0.8 748,837 + +0.0 748,837 + -1.0 748,837 + -0.5 748,837 + +1.1 748,837 + -0.1 748,838 - +0.9 748,838 - +0.5 748,869 + -1.0 748,869 + -1.0 748,879 - -0.6 748,879 - -0.2 748,936 + +0.3 748,936 + -2.0 748,936 + +0.9 748,936 + +0.3 748,936 + -1.1 748,936 + +0.1 748,936 + -0.7 748,936 + +0.0 748,936 + -1.1 748,936 + -1.1 748,936 + +0.6 748,936 + +0.6 748,936 + -1.4 748,936 + +0.9 748,936 + +0.6 748,937 - -2.0 748,937 - -0.8 748,937 - -0.1 748,937 - +0.4 748,937 - +0.4 748,937 - -0.7 748,937 - +0.7 748,937 - +0.4 748,937 - -1.1 748,937 - +0.9 748,937 - +0.3 748,940 + +1.1 748,940 + -2.7 748,940 + -0.2 748,941 - +0.0 748,941 - +0.0 748,941 - -0.3 748,941 - +0.8 748,941 - -0.3 748,941 - +0.9 748,941 - -0.1 748,959 + -0.7 748,966 + +0.3 748,985 + -0.4 748,985 + +0.4 749,018 + +0.4 749,018 + +1.9 749,018 + +1.1 749,019 - +1.4 749,051 + -0.6 749,054 + -1.5 749,055 - +2.4 749,055 - -0.4 749,055 - -0.1 749,082 + -0.3 749,083 - -1.7 749,083 - +0.1 749,083 - +0.0 749,083 - -0.6 749,083 - +2.1 749,111 - +0.9 749,111 - +0.2 749,111 - +0.2 749,145 + -0.6 749,145 + +0.4 749,145 + +1.0 749,179 + +2.7 749,179 + -1.4 749,179 + -0.5 749,179 + +0.4 749,179 + +0.5 749,179 + -0.1 749,180 - -1.3 749,180 - +1.4 749,180 - +0.4 749,180 - +0.5 749,180 - +0.1 749,181 + -1.0 749,181 + +0.9 749,193 + -1.0 749,193 + -0.4 749,193 + +0.5 749,193 + +0.6 749,194 - -2.6 749,194 - +0.1 749,194 - +1.5 749,195 + -1.0 749,195 + +0.1 749,233 + +2.4 749,233 + +1.7 749,233 + -1.1 749,233 + -0.4 749,233 + -1.6 749,233 + +0.1 749,233 + -0.1 749,234 - +0.1 749,234 - +1.1 749,234 - -1.7 749,234 - -1.6 749,274 - DZA65_RS03555 0.24 -0.9 749,321 + DZA65_RS03555 0.41 -0.3 749,321 + DZA65_RS03555 0.41 +0.5 749,322 - DZA65_RS03555 0.42 -0.3 749,359 + DZA65_RS03555 0.55 -0.6 749,360 - DZA65_RS03555 0.56 +1.3 749,363 + DZA65_RS03555 0.57 -1.1 749,364 - DZA65_RS03555 0.57 -0.9 749,364 - DZA65_RS03555 0.57 +0.4 749,364 - DZA65_RS03555 0.57 +0.5 749,441 - DZA65_RS03555 0.85 +0.9 749,486 + +0.9 749,486 + +0.6 749,487 - +0.3 749,505 + +0.5 749,506 - +0.0 749,509 + +0.9 749,509 + -1.7 749,510 - +0.7 749,510 - -0.7 749,517 + +2.0 749,517 + +0.4 749,518 - -0.7 749,518 - +0.1 749,518 - -0.0 749,566 + DZA65_RS03560 0.20 +1.5 749,597 - DZA65_RS03560 0.28 -0.7 749,597 - DZA65_RS03560 0.28 +0.1 749,602 + DZA65_RS03560 0.29 +0.5 749,602 + DZA65_RS03560 0.29 +1.3 749,625 + DZA65_RS03560 0.35 +0.9 749,626 - DZA65_RS03560 0.35 -0.1 749,635 - DZA65_RS03560 0.37 -0.3 749,637 + DZA65_RS03560 0.37 +0.7 749,637 + DZA65_RS03560 0.37 +1.5 749,637 + DZA65_RS03560 0.37 -0.4 749,699 + DZA65_RS03560 0.52 -0.4 749,718 + DZA65_RS03560 0.57 +0.4 749,718 + DZA65_RS03560 0.57 +1.3 749,771 - DZA65_RS03560 0.69 -2.1 749,897 + +0.9 749,923 + -1.0 749,932 + -0.1 749,933 - +0.4 749,933 - +0.5 749,952 + -2.1 749,964 + -1.1 750,003 + +0.3 750,044 - -1.6 750,050 + +0.6 750,259 + DZA65_RS03565 0.33 -1.0 750,274 - DZA65_RS03565 0.36 -0.3 750,276 + DZA65_RS03565 0.37 +2.0 750,277 - DZA65_RS03565 0.37 -0.9 750,277 - DZA65_RS03565 0.37 +0.0 750,278 + DZA65_RS03565 0.37 -1.6 750,278 + DZA65_RS03565 0.37 -1.0 750,278 + -1.0 750,318 + DZA65_RS03565 0.45 -1.0 750,319 - DZA65_RS03565 0.45 +1.3 750,340 - DZA65_RS03565 0.49 +0.0 750,348 + DZA65_RS03565 0.51 +0.9 750,372 - DZA65_RS03565 0.56 -2.3 750,424 - DZA65_RS03565 0.66 -0.1 750,442 - DZA65_RS03565 0.70 +0.4 750,455 + DZA65_RS03565 0.72 +1.6 750,466 + DZA65_RS03565 0.75 +1.2 750,589 + -0.1 750,602 + -0.3 750,603 - +1.3 750,701 - DZA65_RS03570 0.29 +1.7 750,704 + DZA65_RS03570 0.29 -1.1 750,802 + DZA65_RS03570 0.53 -2.1 750,802 + DZA65_RS03570 0.53 -0.1 750,867 + DZA65_RS03570 0.68 +0.5 750,868 - DZA65_RS03570 0.69 +0.2 750,871 + DZA65_RS03570 0.69 +1.3 750,872 - DZA65_RS03570 0.70 +0.9 750,874 + DZA65_RS03570 0.70 +0.4
Or see this region's nucleotide sequence