Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02595 and DZA65_RS02600 are separated by 138 nucleotides DZA65_RS02600 and DZA65_RS02605 are separated by 17 nucleotides
DZA65_RS02595: DZA65_RS02595 - LysR family transcriptional regulator, at 556,618 to 557,556
_RS02595
DZA65_RS02600: DZA65_RS02600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 557,695 to 558,729
_RS02600
DZA65_RS02605: DZA65_RS02605 - oxidoreductase, at 558,747 to 559,787
_RS02605
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 556.696 kb on + strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.812 kb on + strand, within DZA65_RS02595 at 556.813 kb on - strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.835 kb on - strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.929 kb on - strand, within DZA65_RS02595 at 556.972 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.213 kb on - strand, within DZA65_RS02595 at 557.230 kb on + strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.410 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.523 kb on + strand at 557.524 kb on - strand at 557.528 kb on + strand at 557.528 kb on + strand at 557.529 kb on - strand at 557.529 kb on - strand at 557.569 kb on + strand at 557.570 kb on - strand at 557.627 kb on - strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.662 kb on - strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.664 kb on - strand at 557.846 kb on - strand, within DZA65_RS02600 at 557.880 kb on + strand at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.243 kb on + strand, within DZA65_RS02600 at 558.262 kb on - strand, within DZA65_RS02600 at 558.302 kb on - strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.320 kb on - strand, within DZA65_RS02600 at 558.510 kb on - strand, within DZA65_RS02600 at 558.791 kb on + strand at 558.791 kb on + strand at 558.791 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.810 kb on - strand at 558.810 kb on - strand at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.875 kb on - strand, within DZA65_RS02605 at 558.875 kb on - strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.950 kb on - strand, within DZA65_RS02605 at 558.950 kb on - strand, within DZA65_RS02605 at 558.972 kb on + strand, within DZA65_RS02605 at 558.973 kb on - strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.009 kb on - strand, within DZA65_RS02605 at 559.009 kb on - strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.057 kb on - strand, within DZA65_RS02605 at 559.057 kb on - strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.094 kb on + strand, within DZA65_RS02605 at 559.119 kb on - strand, within DZA65_RS02605 at 559.140 kb on + strand at 559.141 kb on - strand, within DZA65_RS02605 at 559.141 kb on - strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.274 kb on + strand, within DZA65_RS02605 at 559.275 kb on - strand, within DZA65_RS02605 at 559.275 kb on - strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.527 kb on - strand, within DZA65_RS02605 at 559.591 kb on + strand, within DZA65_RS02605 at 559.591 kb on + strand, within DZA65_RS02605 at 559.592 kb on - strand, within DZA65_RS02605 at 559.674 kb on - strand, within DZA65_RS02605 at 559.674 kb on - strand, within DZA65_RS02605
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 556,696 + -0.9 556,696 + -0.4 556,696 + -1.1 556,812 + DZA65_RS02595 0.21 -2.3 556,813 - DZA65_RS02595 0.21 +0.3 556,814 + DZA65_RS02595 0.21 -0.4 556,814 + DZA65_RS02595 0.21 +1.0 556,814 + DZA65_RS02595 0.21 -1.4 556,814 + DZA65_RS02595 0.21 +0.3 556,814 + DZA65_RS02595 0.21 +0.7 556,814 + DZA65_RS02595 0.21 +0.2 556,815 - DZA65_RS02595 0.21 -0.8 556,815 - DZA65_RS02595 0.21 -0.8 556,815 - DZA65_RS02595 0.21 -0.7 556,815 - DZA65_RS02595 0.21 -2.1 556,815 - DZA65_RS02595 0.21 -2.2 556,835 - DZA65_RS02595 0.23 +0.9 556,928 + DZA65_RS02595 0.33 +0.7 556,928 + DZA65_RS02595 0.33 -0.2 556,928 + DZA65_RS02595 0.33 +0.5 556,928 + DZA65_RS02595 0.33 +0.9 556,928 + DZA65_RS02595 0.33 -1.9 556,929 - DZA65_RS02595 0.33 +0.5 556,972 + DZA65_RS02595 0.38 -2.1 557,157 + DZA65_RS02595 0.57 +1.4 557,157 + DZA65_RS02595 0.57 +0.4 557,158 - DZA65_RS02595 0.58 -2.4 557,158 - DZA65_RS02595 0.58 +2.2 557,158 - DZA65_RS02595 0.58 -0.8 557,175 + DZA65_RS02595 0.59 -3.3 557,175 + DZA65_RS02595 0.59 +0.4 557,213 - DZA65_RS02595 0.63 -0.5 557,230 + DZA65_RS02595 0.65 +0.3 557,231 - DZA65_RS02595 0.65 +1.9 557,231 - DZA65_RS02595 0.65 -0.4 557,327 + DZA65_RS02595 0.76 -0.6 557,327 + DZA65_RS02595 0.76 -0.5 557,327 + DZA65_RS02595 0.76 +0.3 557,328 - DZA65_RS02595 0.76 -0.8 557,328 - DZA65_RS02595 0.76 +0.9 557,328 - DZA65_RS02595 0.76 -2.0 557,357 + DZA65_RS02595 0.79 -0.5 557,357 + DZA65_RS02595 0.79 +0.7 557,358 - DZA65_RS02595 0.79 -0.5 557,358 - DZA65_RS02595 0.79 -2.2 557,358 - DZA65_RS02595 0.79 -0.5 557,358 - DZA65_RS02595 0.79 -0.5 557,410 + DZA65_RS02595 0.84 -3.0 557,440 + DZA65_RS02595 0.88 +0.4 557,440 + DZA65_RS02595 0.88 +0.3 557,441 - DZA65_RS02595 0.88 -0.2 557,441 - DZA65_RS02595 0.88 +0.7 557,441 - DZA65_RS02595 0.88 -1.1 557,441 - DZA65_RS02595 0.88 +2.2 557,523 + +1.3 557,524 - +0.3 557,528 + +0.4 557,528 + -1.4 557,529 - -0.1 557,529 - +1.7 557,569 + +0.3 557,570 - +1.1 557,627 - +0.8 557,635 + -1.7 557,635 + +0.9 557,635 + -1.7 557,636 - +0.7 557,636 - -0.1 557,636 - -0.7 557,636 - -2.5 557,636 - -0.2 557,662 - -1.2 557,663 + +1.5 557,663 + -1.4 557,663 + -0.4 557,663 + -0.1 557,663 + -0.2 557,663 + -0.3 557,663 + +0.4 557,664 - +0.3 557,846 - DZA65_RS02600 0.15 -0.1 557,880 + -0.7 557,880 + DZA65_RS02600 0.18 +0.2 557,880 + DZA65_RS02600 0.18 +0.9 557,880 + DZA65_RS02600 0.18 -0.9 557,880 + DZA65_RS02600 0.18 -1.4 557,881 - DZA65_RS02600 0.18 -3.3 557,881 - DZA65_RS02600 0.18 -0.1 557,881 - DZA65_RS02600 0.18 -0.8 557,881 - DZA65_RS02600 0.18 +0.5 558,215 + DZA65_RS02600 0.50 +0.9 558,215 + DZA65_RS02600 0.50 -1.2 558,215 + DZA65_RS02600 0.50 +0.7 558,215 + DZA65_RS02600 0.50 +0.5 558,216 - DZA65_RS02600 0.50 -0.2 558,216 - DZA65_RS02600 0.50 -0.7 558,216 - DZA65_RS02600 0.50 -2.4 558,216 - DZA65_RS02600 0.50 -0.7 558,243 + DZA65_RS02600 0.53 +0.2 558,262 - DZA65_RS02600 0.55 +0.5 558,302 - DZA65_RS02600 0.59 -2.4 558,319 + DZA65_RS02600 0.60 +0.9 558,319 + DZA65_RS02600 0.60 -2.2 558,319 + DZA65_RS02600 0.60 -0.3 558,319 + DZA65_RS02600 0.60 -0.8 558,319 + DZA65_RS02600 0.60 -1.4 558,320 - DZA65_RS02600 0.60 +1.7 558,510 - DZA65_RS02600 0.79 -1.4 558,791 + -0.3 558,791 + +0.9 558,791 + -1.1 558,809 + -0.2 558,809 + -0.7 558,809 + +0.4 558,809 + -0.7 558,809 + +1.5 558,809 + +1.2 558,810 - +0.3 558,810 - -0.1 558,874 + DZA65_RS02605 0.12 +0.5 558,874 + DZA65_RS02605 0.12 -1.8 558,874 + DZA65_RS02605 0.12 -1.4 558,874 + DZA65_RS02605 0.12 -0.4 558,874 + DZA65_RS02605 0.12 -1.7 558,875 - DZA65_RS02605 0.12 +0.3 558,875 - DZA65_RS02605 0.12 +1.2 558,949 + DZA65_RS02605 0.19 +0.2 558,949 + DZA65_RS02605 0.19 +1.0 558,949 + DZA65_RS02605 0.19 +1.6 558,949 + DZA65_RS02605 0.19 -0.8 558,949 + DZA65_RS02605 0.19 -0.1 558,949 + DZA65_RS02605 0.19 +0.2 558,949 + DZA65_RS02605 0.19 -0.1 558,950 - DZA65_RS02605 0.20 -0.4 558,950 - DZA65_RS02605 0.20 -1.5 558,972 + DZA65_RS02605 0.22 +0.7 558,973 - DZA65_RS02605 0.22 -0.2 559,008 + DZA65_RS02605 0.25 -0.7 559,008 + DZA65_RS02605 0.25 -2.8 559,008 + DZA65_RS02605 0.25 -1.5 559,008 + DZA65_RS02605 0.25 +1.7 559,008 + DZA65_RS02605 0.25 -0.4 559,009 - DZA65_RS02605 0.25 +0.2 559,009 - DZA65_RS02605 0.25 -1.4 559,056 + DZA65_RS02605 0.30 +0.2 559,056 + DZA65_RS02605 0.30 +0.5 559,056 + DZA65_RS02605 0.30 +0.2 559,057 - DZA65_RS02605 0.30 +0.3 559,057 - DZA65_RS02605 0.30 +0.2 559,060 + DZA65_RS02605 0.30 +0.1 559,060 + DZA65_RS02605 0.30 -0.5 559,060 + DZA65_RS02605 0.30 -0.7 559,060 + DZA65_RS02605 0.30 +0.1 559,060 + DZA65_RS02605 0.30 -0.9 559,060 + DZA65_RS02605 0.30 +0.1 559,060 + DZA65_RS02605 0.30 -0.9 559,060 + DZA65_RS02605 0.30 +0.0 559,060 + DZA65_RS02605 0.30 +0.6 559,060 + DZA65_RS02605 0.30 -0.2 559,060 + DZA65_RS02605 0.30 -1.4 559,060 + DZA65_RS02605 0.30 -1.3 559,060 + DZA65_RS02605 0.30 +0.5 559,060 + DZA65_RS02605 0.30 +0.6 559,060 + DZA65_RS02605 0.30 +0.4 559,060 + DZA65_RS02605 0.30 +0.6 559,060 + DZA65_RS02605 0.30 +0.6 559,061 - DZA65_RS02605 0.30 -0.1 559,061 - DZA65_RS02605 0.30 -0.3 559,061 - DZA65_RS02605 0.30 +1.0 559,061 - DZA65_RS02605 0.30 -1.4 559,061 - DZA65_RS02605 0.30 +0.7 559,061 - DZA65_RS02605 0.30 +0.7 559,061 - DZA65_RS02605 0.30 +1.3 559,061 - DZA65_RS02605 0.30 -0.1 559,061 - DZA65_RS02605 0.30 -1.4 559,061 - DZA65_RS02605 0.30 -0.2 559,061 - DZA65_RS02605 0.30 -2.1 559,061 - DZA65_RS02605 0.30 +0.5 559,061 - DZA65_RS02605 0.30 +0.3 559,061 - DZA65_RS02605 0.30 +0.7 559,061 - DZA65_RS02605 0.30 +0.8 559,061 - DZA65_RS02605 0.30 +0.9 559,061 - DZA65_RS02605 0.30 +0.1 559,061 - DZA65_RS02605 0.30 +1.5 559,094 + DZA65_RS02605 0.33 -0.7 559,119 - DZA65_RS02605 0.36 +2.5 559,140 + +0.3 559,141 - DZA65_RS02605 0.38 -0.3 559,141 - DZA65_RS02605 0.38 -0.4 559,230 + DZA65_RS02605 0.46 -2.1 559,230 + DZA65_RS02605 0.46 +0.7 559,230 + DZA65_RS02605 0.46 -2.4 559,230 + DZA65_RS02605 0.46 -1.1 559,231 - DZA65_RS02605 0.46 +0.7 559,231 - DZA65_RS02605 0.46 -1.7 559,231 - DZA65_RS02605 0.46 -0.1 559,231 - DZA65_RS02605 0.46 +0.0 559,231 - DZA65_RS02605 0.46 +0.3 559,274 + DZA65_RS02605 0.51 +0.8 559,275 - DZA65_RS02605 0.51 +0.9 559,275 - DZA65_RS02605 0.51 -1.2 559,359 + DZA65_RS02605 0.59 +0.0 559,359 + DZA65_RS02605 0.59 +0.3 559,359 + DZA65_RS02605 0.59 +0.3 559,386 + DZA65_RS02605 0.61 -0.1 559,386 + DZA65_RS02605 0.61 -0.1 559,386 + DZA65_RS02605 0.61 +1.5 559,386 + DZA65_RS02605 0.61 +0.9 559,386 + DZA65_RS02605 0.61 -1.8 559,387 - DZA65_RS02605 0.61 -0.0 559,387 - DZA65_RS02605 0.61 -0.2 559,387 - DZA65_RS02605 0.61 +0.3 559,387 - DZA65_RS02605 0.61 -0.1 559,387 - DZA65_RS02605 0.61 -1.9 559,527 - DZA65_RS02605 0.75 -1.9 559,591 + DZA65_RS02605 0.81 +0.4 559,591 + DZA65_RS02605 0.81 -0.1 559,592 - DZA65_RS02605 0.81 +0.2 559,674 - DZA65_RS02605 0.89 +0.8 559,674 - DZA65_RS02605 0.89 +1.6
Or see this region's nucleotide sequence