Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01340 and DZA65_RS01345 overlap by 8 nucleotides DZA65_RS01345 and DZA65_RS01350 are separated by 138 nucleotides DZA65_RS01350 and DZA65_RS01355 are separated by 23 nucleotides DZA65_RS01355 and DZA65_RS01360 are separated by 332 nucleotides
DZA65_RS01340: DZA65_RS01340 - host cell division inhibitor Icd-like protein, at 297,831 to 298,019
_RS01340
DZA65_RS01345: DZA65_RS01345 - hypothetical protein, at 298,012 to 298,203
_RS01345
DZA65_RS01350: DZA65_RS01350 - DNA-binding transcriptional regulator Fis, at 298,342 to 298,638
_RS01350
DZA65_RS01355: DZA65_RS01355 - tRNA dihydrouridine synthase DusB, at 298,662 to 299,627
_RS01355
DZA65_RS01360: DZA65_RS01360 - 50S ribosomal protein L11 methyltransferase, at 299,960 to 300,847
_RS01360
Position (kb) 298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.663 kb on + strand at 297.663 kb on + strand at 297.664 kb on - strand at 297.664 kb on - strand at 297.678 kb on - strand at 297.679 kb on + strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.730 kb on - strand at 297.803 kb on + strand at 297.815 kb on + strand at 297.815 kb on + strand at 297.816 kb on - strand at 297.816 kb on - strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.831 kb on - strand at 297.831 kb on - strand at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.920 kb on + strand at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.927 kb on - strand, within DZA65_RS01340 at 298.031 kb on + strand at 298.032 kb on - strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.115 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.144 kb on - strand, within DZA65_RS01345 at 298.262 kb on + strand at 298.262 kb on + strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.267 kb on + strand at 298.268 kb on - strand at 298.341 kb on - strand at 298.341 kb on - strand at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.638 kb on + strand at 298.638 kb on + strand at 298.639 kb on - strand at 298.663 kb on + strand at 298.720 kb on - strand at 298.720 kb on - strand at 298.771 kb on + strand, within DZA65_RS01355 at 298.787 kb on + strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.797 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.839 kb on + strand, within DZA65_RS01355 at 298.840 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.984 kb on + strand, within DZA65_RS01355 at 298.985 kb on - strand, within DZA65_RS01355 at 299.019 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.072 kb on + strand, within DZA65_RS01355 at 299.073 kb on - strand, within DZA65_RS01355 at 299.081 kb on - strand, within DZA65_RS01355 at 299.180 kb on + strand, within DZA65_RS01355 at 299.180 kb on + strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.221 kb on - strand, within DZA65_RS01355 at 299.233 kb on - strand, within DZA65_RS01355 at 299.233 kb on - strand, within DZA65_RS01355 at 299.447 kb on + strand, within DZA65_RS01355 at 299.448 kb on - strand, within DZA65_RS01355 at 299.448 kb on - strand, within DZA65_RS01355 at 299.451 kb on + strand, within DZA65_RS01355 at 299.451 kb on + strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.628 kb on - strand at 299.628 kb on - strand at 299.628 kb on - strand at 299.644 kb on + strand at 299.644 kb on + strand at 299.644 kb on + strand at 299.644 kb on + strand at 299.645 kb on - strand at 299.645 kb on - strand at 299.645 kb on - strand at 299.645 kb on - strand at 299.645 kb on - strand at 299.666 kb on - strand at 299.666 kb on - strand at 299.666 kb on - strand at 299.666 kb on - strand at 299.666 kb on - strand at 299.668 kb on - strand at 299.668 kb on - strand at 299.668 kb on - strand at 299.671 kb on - strand at 299.786 kb on + strand at 299.842 kb on - strand at 299.842 kb on - strand at 300.039 kb on + strand at 300.039 kb on + strand at 300.039 kb on + strand at 300.039 kb on + strand at 300.039 kb on + strand at 300.040 kb on - strand at 300.040 kb on - strand at 300.040 kb on - strand at 300.157 kb on + strand, within DZA65_RS01360 at 300.158 kb on - strand, within DZA65_RS01360 at 300.210 kb on + strand, within DZA65_RS01360 at 300.210 kb on + strand, within DZA65_RS01360 at 300.210 kb on + strand, within DZA65_RS01360 at 300.210 kb on + strand, within DZA65_RS01360 at 300.210 kb on + strand, within DZA65_RS01360 at 300.211 kb on - strand, within DZA65_RS01360 at 300.211 kb on - strand, within DZA65_RS01360 at 300.211 kb on - strand, within DZA65_RS01360 at 300.211 kb on - strand, within DZA65_RS01360 at 300.211 kb on - strand, within DZA65_RS01360 at 300.485 kb on + strand, within DZA65_RS01360
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 297,663 + +1.5 297,663 + +2.5 297,664 - +0.1 297,664 - -1.6 297,678 - -0.3 297,679 + -1.1 297,680 - +0.0 297,680 - -0.5 297,680 - -1.3 297,730 - +0.2 297,803 + -1.6 297,815 + +0.8 297,815 + -0.3 297,816 - -0.9 297,816 - -0.6 297,824 + -2.0 297,824 + -1.0 297,824 + +0.6 297,824 + +0.7 297,824 + +0.2 297,824 + +0.2 297,824 + -0.4 297,824 + +0.2 297,825 - -0.1 297,825 - -1.1 297,825 - +0.8 297,825 - -0.4 297,825 - -0.5 297,831 - -0.8 297,831 - +0.0 297,917 + DZA65_RS01340 0.46 -0.5 297,917 + DZA65_RS01340 0.46 +0.2 297,917 + DZA65_RS01340 0.46 +0.8 297,917 + DZA65_RS01340 0.46 +0.1 297,917 + DZA65_RS01340 0.46 -1.7 297,917 + DZA65_RS01340 0.46 -1.8 297,917 + DZA65_RS01340 0.46 +0.4 297,917 + DZA65_RS01340 0.46 -1.0 297,917 + DZA65_RS01340 0.46 +0.4 297,917 + DZA65_RS01340 0.46 -0.5 297,917 + DZA65_RS01340 0.46 +0.8 297,918 - DZA65_RS01340 0.46 -1.3 297,918 - DZA65_RS01340 0.46 -0.2 297,918 - DZA65_RS01340 0.46 -0.3 297,918 - DZA65_RS01340 0.46 -1.0 297,918 - DZA65_RS01340 0.46 +0.3 297,918 - DZA65_RS01340 0.46 -0.6 297,918 - DZA65_RS01340 0.46 -1.9 297,920 + +0.0 297,920 + DZA65_RS01340 0.47 -0.3 297,920 + DZA65_RS01340 0.47 +1.1 297,920 + DZA65_RS01340 0.47 -1.8 297,927 - DZA65_RS01340 0.51 -0.8 298,031 + -0.8 298,032 - DZA65_RS01345 0.10 -1.6 298,072 + DZA65_RS01345 0.31 +0.3 298,072 + DZA65_RS01345 0.31 +0.3 298,115 + DZA65_RS01345 0.54 -1.0 298,139 + DZA65_RS01345 0.66 -0.3 298,139 + DZA65_RS01345 0.66 +1.0 298,139 + DZA65_RS01345 0.66 +0.0 298,140 - DZA65_RS01345 0.67 -0.1 298,140 - DZA65_RS01345 0.67 +0.0 298,140 - DZA65_RS01345 0.67 +0.5 298,143 + DZA65_RS01345 0.68 -0.6 298,143 + DZA65_RS01345 0.68 -3.1 298,143 + DZA65_RS01345 0.68 +0.5 298,144 - DZA65_RS01345 0.69 -0.6 298,262 + +0.2 298,262 + -1.1 298,263 - -0.3 298,263 - +0.4 298,263 - +0.7 298,263 - +0.2 298,263 - +0.1 298,267 + -1.3 298,268 - +0.0 298,341 - -0.1 298,341 - +0.5 298,487 + DZA65_RS01350 0.49 +1.0 298,487 + DZA65_RS01350 0.49 +0.4 298,487 + DZA65_RS01350 0.49 -1.6 298,488 - DZA65_RS01350 0.49 +0.4 298,488 - DZA65_RS01350 0.49 +0.2 298,638 + +1.8 298,638 + +0.2 298,639 - -1.3 298,663 + +0.8 298,720 - +1.0 298,720 - +1.0 298,771 + DZA65_RS01355 0.11 +0.3 298,787 + DZA65_RS01355 0.13 +0.5 298,788 - DZA65_RS01355 0.13 +0.6 298,788 - DZA65_RS01355 0.13 +1.8 298,788 - DZA65_RS01355 0.13 +0.9 298,788 - DZA65_RS01355 0.13 +1.2 298,788 - DZA65_RS01355 0.13 +1.9 298,788 - DZA65_RS01355 0.13 +1.0 298,788 - DZA65_RS01355 0.13 +0.6 298,788 - DZA65_RS01355 0.13 +0.4 298,788 - DZA65_RS01355 0.13 +0.4 298,797 - DZA65_RS01355 0.14 +1.6 298,820 - DZA65_RS01355 0.16 +0.6 298,820 - DZA65_RS01355 0.16 +1.4 298,820 - DZA65_RS01355 0.16 +1.8 298,839 + DZA65_RS01355 0.18 +0.9 298,840 - DZA65_RS01355 0.18 +1.2 298,842 - DZA65_RS01355 0.19 +0.8 298,842 - DZA65_RS01355 0.19 +1.0 298,842 - DZA65_RS01355 0.19 +0.0 298,909 + DZA65_RS01355 0.26 +2.0 298,909 + DZA65_RS01355 0.26 -2.4 298,910 - DZA65_RS01355 0.26 +1.3 298,910 - DZA65_RS01355 0.26 +1.0 298,984 + DZA65_RS01355 0.33 -1.0 298,985 - DZA65_RS01355 0.33 -0.7 299,019 - DZA65_RS01355 0.37 +1.9 299,061 - DZA65_RS01355 0.41 +0.9 299,061 - DZA65_RS01355 0.41 +0.7 299,061 - DZA65_RS01355 0.41 +0.7 299,072 + DZA65_RS01355 0.42 +1.8 299,073 - DZA65_RS01355 0.43 +1.1 299,081 - DZA65_RS01355 0.43 -0.1 299,180 + DZA65_RS01355 0.54 +1.0 299,180 + DZA65_RS01355 0.54 -0.5 299,181 - DZA65_RS01355 0.54 -0.0 299,181 - DZA65_RS01355 0.54 -2.0 299,181 - DZA65_RS01355 0.54 -2.4 299,221 - DZA65_RS01355 0.58 +1.2 299,233 - DZA65_RS01355 0.59 +0.8 299,233 - DZA65_RS01355 0.59 -0.7 299,447 + DZA65_RS01355 0.81 +0.9 299,448 - DZA65_RS01355 0.81 -0.6 299,448 - DZA65_RS01355 0.81 -1.7 299,451 + DZA65_RS01355 0.82 -0.4 299,451 + DZA65_RS01355 0.82 +1.0 299,452 - DZA65_RS01355 0.82 +1.7 299,452 - DZA65_RS01355 0.82 +0.7 299,452 - DZA65_RS01355 0.82 -0.6 299,452 - DZA65_RS01355 0.82 +0.3 299,452 - DZA65_RS01355 0.82 -0.1 299,452 - DZA65_RS01355 0.82 -0.6 299,452 - DZA65_RS01355 0.82 +0.9 299,452 - DZA65_RS01355 0.82 -0.8 299,452 - DZA65_RS01355 0.82 +0.3 299,452 - DZA65_RS01355 0.82 -0.9 299,452 - DZA65_RS01355 0.82 +0.9 299,452 - DZA65_RS01355 0.82 -2.3 299,452 - DZA65_RS01355 0.82 -1.8 299,452 - DZA65_RS01355 0.82 +1.5 299,452 - DZA65_RS01355 0.82 -0.8 299,452 - DZA65_RS01355 0.82 -0.7 299,628 - +0.3 299,628 - +0.3 299,628 - -1.4 299,644 + -0.6 299,644 + +1.7 299,644 + +1.0 299,644 + +1.5 299,645 - +1.2 299,645 - -0.0 299,645 - -0.3 299,645 - +0.1 299,645 - +0.5 299,666 - +0.7 299,666 - +0.5 299,666 - +0.8 299,666 - +1.3 299,666 - +0.5 299,668 - +0.7 299,668 - +1.2 299,668 - -0.1 299,671 - +1.1 299,786 + +0.8 299,842 - +0.2 299,842 - -0.4 300,039 + +1.4 300,039 + -0.3 300,039 + -0.6 300,039 + -2.3 300,039 + -1.3 300,040 - +2.0 300,040 - +0.4 300,040 - +0.2 300,157 + DZA65_RS01360 0.22 +0.2 300,158 - DZA65_RS01360 0.22 -2.0 300,210 + DZA65_RS01360 0.28 +1.0 300,210 + DZA65_RS01360 0.28 +1.1 300,210 + DZA65_RS01360 0.28 -0.8 300,210 + DZA65_RS01360 0.28 +0.0 300,210 + DZA65_RS01360 0.28 -0.2 300,211 - DZA65_RS01360 0.28 +0.3 300,211 - DZA65_RS01360 0.28 -0.6 300,211 - DZA65_RS01360 0.28 +0.7 300,211 - DZA65_RS01360 0.28 -0.1 300,211 - DZA65_RS01360 0.28 +0.6 300,485 + DZA65_RS01360 0.59 +1.0
Or see this region's nucleotide sequence