Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20900

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,749,981	+		DDA3937_RS20890	0.57	-3.2
4,749,986	+		DDA3937_RS20890	0.58	-3.7
4,749,987	-				+0.1
4,749,987	-		DDA3937_RS20890	0.58	-1.9
4,749,987	-		DDA3937_RS20890	0.58	-1.4
4,750,097	+		DDA3937_RS20890	0.66	-3.3
4,750,097	+		DDA3937_RS20890	0.66	-4.6
4,750,163	+		DDA3937_RS20890	0.71	-3.6
4,750,163	+		DDA3937_RS20890	0.71	-2.3
4,750,163	+		DDA3937_RS20890	0.71	-4.6
4,750,163	+		DDA3937_RS20890	0.71	-2.1
4,750,164	-		DDA3937_RS20890	0.71	-3.5
4,750,164	-		DDA3937_RS20890	0.71	-4.2
4,750,164	-		DDA3937_RS20890	0.71	-3.6
4,750,164	-		DDA3937_RS20890	0.71	+0.9
4,750,164	-		DDA3937_RS20890	0.71	-1.9
4,750,164	-		DDA3937_RS20890	0.71	-2.0
4,750,185	+		DDA3937_RS20890	0.72	-3.7
4,750,186	-		DDA3937_RS20890	0.72	-2.3
4,750,186	-		DDA3937_RS20890	0.72	-0.9
4,750,186	-		DDA3937_RS20890	0.72	-1.5
4,750,262	+		DDA3937_RS20890	0.78	-2.1
4,750,262	+		DDA3937_RS20890	0.78	-2.9
4,750,262	+		DDA3937_RS20890	0.78	-3.5
4,750,262	+		DDA3937_RS20890	0.78	-2.6
4,750,263	-		DDA3937_RS20890	0.78	-2.6
4,750,269	+		DDA3937_RS20890	0.79	-1.5
4,750,371	-		DDA3937_RS20890	0.86	-3.5
4,750,371	-		DDA3937_RS20890	0.86	-1.9
4,750,400	+		DDA3937_RS20890	0.88	-2.8
4,750,400	+		DDA3937_RS20890	0.88	-0.5
4,750,436	+				-3.3
4,750,436	+				-3.9
4,750,436	+				-2.8
4,750,437	-				-2.2
4,750,437	-				-4.4
4,750,437	-				-2.3
4,750,437	-				-4.2
4,750,442	+				-1.9
4,750,443	-				-0.6
4,750,557	+				-2.4
4,750,557	+				-1.5
4,750,557	+				-3.1
4,750,557	+				+1.1
4,750,557	+				-4.7
4,750,558	-				-1.7
4,750,558	-				-0.5
4,750,558	-				-1.7
4,750,558	-				-3.8
4,750,558	-				-1.7
4,750,561	+				-2.9
4,750,561	+				-1.5
4,750,561	+				-3.1
4,750,561	+				-1.9
4,750,561	+				-2.2
4,750,561	+				-4.0
4,750,562	-				-2.9
4,750,562	-				-0.6
4,750,562	-				-1.5
4,750,562	-				-3.6
4,750,590	+				-3.5
4,750,591	-				-3.0
4,750,591	-				-0.6
4,750,596	+				-1.1
4,750,596	+				-2.0
4,750,597	-				-2.0
4,750,730	-				+0.9
4,750,858	-		DDA3937_RS23455	0.89	-0.7
4,750,858	-		DDA3937_RS23455	0.89	-0.6
4,750,858	-		DDA3937_RS23455	0.89	+1.2
4,750,859	+				+0.8
4,750,860	-				+0.1
4,750,860	-				-2.3
4,750,860	-				-1.2
4,750,870	+				-0.5
4,750,872	+				-0.5
4,750,872	+				+0.2
4,750,873	-				-0.3
4,750,873	-				-0.9
4,750,887	-				-1.7
4,750,920	+				-0.4
4,750,920	+				+2.7
4,750,920	+				+0.8
4,750,920	+				-2.9
4,750,920	+				+0.9
4,750,920	+				+1.5
4,750,920	+				+1.2
4,750,921	-				-0.9
4,750,921	-				-0.8
4,750,921	-				+3.7
4,750,921	-				-0.9
4,750,921	-				+0.4
4,750,921	-				+0.5
4,750,921	-				+2.0
4,750,922	+				+0.6
4,750,922	+				+1.4
4,750,922	+				+0.1
4,750,922	+				+0.2
4,750,922	+				-1.1
4,750,922	+				-2.2
4,750,922	+				+0.6
4,750,922	+				-0.5
4,750,922	+				-0.7
4,750,922	+				-0.9
4,750,922	+				-0.9
4,750,923	-				+0.5
4,750,923	-				+0.6
4,750,923	-				+0.8
4,750,923	-				+0.5
4,750,923	-				-0.3
4,750,923	-				+0.4
4,751,080	+		DDA3937_RS20900	0.21	-0.1
4,751,080	+		DDA3937_RS20900	0.21	-1.3
4,751,081	-		DDA3937_RS20900	0.21	-0.1
4,751,081	-		DDA3937_RS20900	0.21	+0.4
4,751,100	+		DDA3937_RS20900	0.23	-0.1
4,751,100	+		DDA3937_RS20900	0.23	+0.3
4,751,101	-		DDA3937_RS20900	0.23	+0.9
4,751,101	-		DDA3937_RS20900	0.23	-1.5
4,751,118	+		DDA3937_RS20900	0.25	+0.1
4,751,118	+		DDA3937_RS20900	0.25	-0.4
4,751,118	+		DDA3937_RS20900	0.25	-0.9
4,751,119	-		DDA3937_RS20900	0.25	-0.0
4,751,119	-		DDA3937_RS20900	0.25	+0.1
4,751,122	+		DDA3937_RS20900	0.25	+0.3
4,751,122	+		DDA3937_RS20900	0.25	-1.3
4,751,122	+		DDA3937_RS20900	0.25	-1.7
4,751,122	+		DDA3937_RS20900	0.25	-1.5
4,751,123	-		DDA3937_RS20900	0.25	-0.0
4,751,123	-		DDA3937_RS20900	0.25	-2.7
4,751,123	-		DDA3937_RS20900	0.25	-0.5
4,751,123	-		DDA3937_RS20900	0.25	-2.5
4,751,123	-		DDA3937_RS20900	0.25	-0.3
4,751,123	-		DDA3937_RS20900	0.25	+0.4
4,751,123	-		DDA3937_RS20900	0.25	-0.5
4,751,123	-		DDA3937_RS20900	0.25	+0.5
4,751,227	+		DDA3937_RS20900	0.36	+0.8
4,751,227	+		DDA3937_RS20900	0.36	+0.1
4,751,227	+		DDA3937_RS20900	0.36	-0.6
4,751,235	+		DDA3937_RS20900	0.37	-1.6
4,751,264	+		DDA3937_RS20900	0.40	-0.5
4,751,323	-		DDA3937_RS20900	0.46	-0.7
4,751,323	-		DDA3937_RS20900	0.46	-0.0
4,751,460	+		DDA3937_RS20900	0.61	-1.4
4,751,460	+		DDA3937_RS20900	0.61	+1.0
4,751,460	+		DDA3937_RS20900	0.61	-0.7
4,751,460	+		DDA3937_RS20900	0.61	+0.2
4,751,461	-		DDA3937_RS20900	0.61	+1.6
4,751,499	+		DDA3937_RS20900	0.65	+0.1
4,751,517	+				-0.5
4,751,518	-		DDA3937_RS20900	0.67	-0.2
4,751,597	+		DDA3937_RS20900	0.75	-1.3
4,751,598	-		DDA3937_RS20900	0.75	+0.2
4,751,598	-		DDA3937_RS20900	0.75	-0.2
4,751,626	+		DDA3937_RS20900	0.78	+1.0
4,751,635	-		DDA3937_RS20900	0.79	-1.5
4,751,647	-		DDA3937_RS20900	0.81	-0.5
4,751,700	+		DDA3937_RS20900	0.86	-0.0
4,751,775	+				-0.1
4,751,775	+				-1.3
4,751,776	-				-0.0
4,751,812	+				+0.3
4,751,829	+				-0.2
4,751,829	+				-0.2
4,751,829	+				-0.8
4,751,829	+				-3.7
4,751,829	+				-0.3
4,751,829	+				-0.2
4,751,829	+				+1.1
4,751,830	-				-0.1
4,751,830	-				-0.5
4,751,830	-				-0.7
4,751,830	-				-1.2
4,751,833	+				-0.3
4,751,833	+				-0.7
4,751,833	+				+2.4
4,751,890	+				-0.5
4,751,936	+				-0.6
4,751,937	-				-0.9
4,751,937	-				-0.9
4,751,937	-				+2.5
4,751,937	-				-0.6
4,751,942	+				-1.1
4,752,195	+				-0.3
4,752,195	+				-0.3
4,752,195	+				+1.1
4,752,197	+				+0.1
4,752,198	-				-2.0
4,752,198	-				-0.4
4,752,198	-				+0.7
4,752,198	-				-1.7
4,752,204	+				-0.5
4,752,204	+				+0.1
4,752,204	+				-1.1
4,752,204	+				+1.1
4,752,204	+				+0.1
4,752,204	+				-0.6
4,752,205	-				+0.4
4,752,205	-				-0.7
4,752,205	-				-1.9
4,752,205	-				-0.2
4,752,205	-				-1.0
4,752,211	+				+0.1
4,752,212	-				-1.5
4,752,212	-				-1.0
4,752,212	-				+1.2
4,752,218	+				-0.3
4,752,218	+				-2.4
4,752,219	-				+0.1
4,752,219	-				-1.9
4,752,294	+				+0.8
4,752,294	+				+0.7
4,752,294	+				+0.8
4,752,294	+				-0.8
4,752,294	+				-0.2
4,752,295	-				-1.7
4,752,295	-				+0.4
4,752,295	-				-1.3
4,752,295	-				+0.4
4,752,295	-				-1.7
4,752,295	-				+0.3
4,752,296	+				+0.1
4,752,296	+				-0.8
4,752,296	+				-0.8
4,752,297	-				+0.6
4,752,297	-				+0.2
4,752,297	-				+0.3
4,752,297	-				+1.5
4,752,337	-				-0.4
4,752,439	+				-1.5
4,752,439	+				+0.2
4,752,439	+				-0.4
4,752,439	+				+0.8
4,752,439	+				+2.1
4,752,439	+				+1.5
4,752,439	+				+1.3
4,752,440	-				-0.8
4,752,440	-				-0.9
4,752,440	-				+0.3
4,752,440	-				-0.3
4,752,499	+				-1.2
4,752,499	+				-1.2
4,752,500	-				-1.6
4,752,500	-				-0.6
4,752,500	-				+1.7
4,752,578	+		DDA3937_RS20910	0.23	+0.7
4,752,578	+		DDA3937_RS20910	0.23	-2.5
4,752,578	+		DDA3937_RS20910	0.23	+0.2
4,752,579	-		DDA3937_RS20910	0.24	-1.5
4,752,579	-		DDA3937_RS20910	0.24	+2.0
4,752,623	-		DDA3937_RS20910	0.31	-0.8
4,752,623	-		DDA3937_RS20910	0.31	+0.5
4,752,623	-		DDA3937_RS20910	0.31	+0.6
4,752,623	-		DDA3937_RS20910	0.31	+0.5
4,752,623	-		DDA3937_RS20910	0.31	-0.9
4,752,623	-		DDA3937_RS20910	0.31	-1.8
4,752,709	+				+0.1
4,752,709	+		DDA3937_RS20910	0.46	-0.8
4,752,709	+		DDA3937_RS20910	0.46	-0.8
4,752,806	+		DDA3937_RS20910	0.63	-2.0