Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20360

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,634,988	+		DDA3937_RS20355	0.40	-2.1
4,634,989	-		DDA3937_RS20355	0.40	-3.4
4,635,030	-		DDA3937_RS20355	0.43	+1.4
4,635,096	-		DDA3937_RS20355	0.49	-1.7
4,635,096	-		DDA3937_RS20355	0.49	-2.8
4,635,184	+		DDA3937_RS20355	0.57	-1.0
4,635,185	-		DDA3937_RS20355	0.57	-1.1
4,635,185	-		DDA3937_RS20355	0.57	-4.5
4,635,210	+		DDA3937_RS20355	0.59	-1.4
4,635,445	-		DDA3937_RS20355	0.79	-1.5
4,635,445	-		DDA3937_RS20355	0.79	-4.0
4,635,519	+		DDA3937_RS20355	0.86	-0.9
4,635,519	+		DDA3937_RS20355	0.86	-2.3
4,635,519	+		DDA3937_RS20355	0.86	-2.1
4,635,519	+		DDA3937_RS20355	0.86	-0.5
4,635,519	+		DDA3937_RS20355	0.86	-2.6
4,635,520	-		DDA3937_RS20355	0.86	-4.6
4,635,520	-		DDA3937_RS20355	0.86	-1.2
4,635,520	-		DDA3937_RS20355	0.86	-4.5
4,635,611	+				-2.8
4,635,612	-				-0.8
4,635,651	-				-1.9
4,635,776	+				-1.1
4,635,777	-				-0.4
4,635,777	-				-1.7
4,635,787	+				-0.2
4,635,787	+				+0.8
4,635,788	-				+0.1
4,635,788	-				+0.3
4,635,788	-				-0.6
4,635,844	+				+0.6
4,635,852	+				-1.5
4,635,853	-				-0.5
4,635,853	-				-1.9
4,635,859	+				-1.1
4,635,859	+				-0.1
4,635,859	+				+1.8
4,635,860	-				-1.9
4,635,860	-				-3.5
4,635,896	+				+0.8
4,635,900	+				-1.5
4,635,900	+				+0.7
4,635,900	+				-0.5
4,635,900	+				-1.2
4,635,900	+				+0.5
4,635,900	+				-2.2
4,635,900	+				+0.3
4,635,900	+				-0.5
4,635,900	+				+0.7
4,635,901	-				-3.3
4,635,901	-				-2.2
4,635,901	-				-5.3
4,635,901	-				-3.7
4,635,965	+				-2.2
4,635,965	+				-0.9
4,635,965	+				-2.7
4,635,965	+				-3.7
4,635,966	-				-2.5
4,635,969	+				-4.0
4,635,969	+				-2.2
4,635,969	+				-4.3
4,635,969	+				-0.9
4,635,969	+				-1.2
4,635,969	+				-2.4
4,635,969	+				-3.0
4,635,970	-				-4.4
4,635,983	-				-3.2
4,635,983	-				-3.4
4,636,022	+				-4.0
4,636,232	-				-4.0
4,636,239	+		DDA3937_RS20360	0.10	-2.9
4,636,239	+		DDA3937_RS20360	0.10	-2.4
4,636,239	+		DDA3937_RS20360	0.10	-2.5
4,636,239	+		DDA3937_RS20360	0.10	-3.8
4,636,239	+		DDA3937_RS20360	0.10	-1.5
4,636,239	+		DDA3937_RS20360	0.10	-4.0
4,636,240	-		DDA3937_RS20360	0.10	-0.5
4,636,240	-		DDA3937_RS20360	0.10	-3.2
4,636,240	-		DDA3937_RS20360	0.10	-2.9
4,636,240	-		DDA3937_RS20360	0.10	-2.4
4,636,266	+		DDA3937_RS20360	0.11	-4.6
4,636,434	+		DDA3937_RS20360	0.18	-5.1
4,636,435	-		DDA3937_RS20360	0.18	-2.2
4,636,435	-		DDA3937_RS20360	0.18	-4.1
4,636,474	+		DDA3937_RS20360	0.19	-2.8
4,636,474	+		DDA3937_RS20360	0.19	-1.2
4,636,474	+		DDA3937_RS20360	0.19	-3.2
4,636,475	-		DDA3937_RS20360	0.19	-0.9
4,636,531	-		DDA3937_RS20360	0.21	-3.2
4,636,602	+		DDA3937_RS20360	0.24	-6.9
4,636,602	+		DDA3937_RS20360	0.24	-2.5
4,636,602	+		DDA3937_RS20360	0.24	-1.9
4,636,603	-		DDA3937_RS20360	0.24	-4.1
4,636,817	+		DDA3937_RS20360	0.32	-1.7
4,636,817	+		DDA3937_RS20360	0.32	+2.4
4,636,817	+		DDA3937_RS20360	0.32	-1.2
4,636,818	-		DDA3937_RS20360	0.32	-2.2
4,636,818	-		DDA3937_RS20360	0.32	-4.0
4,637,025	-				+0.1
4,637,039	-		DDA3937_RS20360	0.40	-4.6
4,637,154	-		DDA3937_RS20360	0.45	-1.6
4,637,154	-		DDA3937_RS20360	0.45	-2.7
4,637,154	-		DDA3937_RS20360	0.45	-1.7
4,637,203	+		DDA3937_RS20360	0.47	-6.5
4,637,203	+		DDA3937_RS20360	0.47	-2.9
4,637,204	-		DDA3937_RS20360	0.47	-1.2
4,637,271	+		DDA3937_RS20360	0.49	-3.6
4,637,271	+		DDA3937_RS20360	0.49	-5.4
4,637,271	+		DDA3937_RS20360	0.49	-3.5
4,637,271	+		DDA3937_RS20360	0.49	-3.3
4,637,271	+		DDA3937_RS20360	0.49	-1.7
4,637,271	+		DDA3937_RS20360	0.49	-2.9
4,637,272	-		DDA3937_RS20360	0.49	-2.1
4,637,272	-		DDA3937_RS20360	0.49	+0.1
4,637,384	-		DDA3937_RS20360	0.54	-2.6
4,637,384	-		DDA3937_RS20360	0.54	+0.5
4,637,384	-		DDA3937_RS20360	0.54	-3.1
4,637,387	+		DDA3937_RS20360	0.54	-7.2
4,637,388	-		DDA3937_RS20360	0.54	-4.6
4,637,388	-		DDA3937_RS20360	0.54	-3.2
4,637,388	-		DDA3937_RS20360	0.54	-2.4
4,637,388	-		DDA3937_RS20360	0.54	-2.9
4,637,388	-		DDA3937_RS20360	0.54	-2.4
4,637,458	+		DDA3937_RS20360	0.56	+0.6
4,637,519	+		DDA3937_RS20360	0.59	-4.1
4,637,519	+		DDA3937_RS20360	0.59	-2.6
4,637,519	+		DDA3937_RS20360	0.59	-2.4
4,637,520	-		DDA3937_RS20360	0.59	-0.5
4,637,520	-		DDA3937_RS20360	0.59	-1.2
4,637,520	-		DDA3937_RS20360	0.59	-2.9
4,637,680	+		DDA3937_RS20360	0.65	-5.1
4,637,681	-		DDA3937_RS20360	0.65	-3.6
4,637,681	-		DDA3937_RS20360	0.65	+0.1
4,637,826	+		DDA3937_RS20360	0.70	-4.0
4,637,826	+		DDA3937_RS20360	0.70	-2.7
4,637,826	+		DDA3937_RS20360	0.70	-3.6
4,637,853	+		DDA3937_RS20360	0.71	-3.8
4,637,870	-		DDA3937_RS20360	0.72	-6.5
4,637,971	+		DDA3937_RS20360	0.76	-2.0
4,637,971	+		DDA3937_RS20360	0.76	-4.1
4,637,972	-		DDA3937_RS20360	0.76	-5.6
4,637,972	-		DDA3937_RS20360	0.76	-1.7
4,637,981	-		DDA3937_RS20360	0.76	-1.7
4,637,984	+		DDA3937_RS20360	0.76	-3.8
4,638,010	+		DDA3937_RS20360	0.77	-2.2
4,638,011	-		DDA3937_RS20360	0.77	-3.4
4,638,265	-		DDA3937_RS20360	0.87	-3.4
4,638,279	-		DDA3937_RS20360	0.87	-2.4
4,638,296	+		DDA3937_RS20360	0.88	-1.5
4,638,296	+		DDA3937_RS20360	0.88	-2.9
4,638,296	+		DDA3937_RS20360	0.88	-6.8
4,638,296	+		DDA3937_RS20360	0.88	-2.1
4,638,297	-		DDA3937_RS20360	0.88	-4.7
4,638,297	-		DDA3937_RS20360	0.88	-2.1
4,638,297	-		DDA3937_RS20360	0.88	-1.2
4,638,310	+		DDA3937_RS20360	0.89	-0.5
4,638,313	+		DDA3937_RS20360	0.89	-3.2
4,638,313	+		DDA3937_RS20360	0.89	-2.7
4,638,314	-		DDA3937_RS20360	0.89	-3.0
4,638,314	-		DDA3937_RS20360	0.89	-1.5
4,638,314	-		DDA3937_RS20360	0.89	-3.0
4,638,314	-		DDA3937_RS20360	0.89	-0.9
4,638,314	-		DDA3937_RS20360	0.89	-4.1
4,638,473	-				-1.2
4,638,668	+				+0.1
4,638,669	-				-0.4
4,638,672	+				+0.2
4,638,672	+				-0.1
4,638,672	+				+0.2
4,638,672	+				+0.1
4,638,673	-				-0.2
4,638,673	-				+1.4
4,638,673	-				-1.7
4,638,673	-				-0.9
4,638,673	-				-0.2
4,638,676	+				+0.4
4,638,676	+				-1.2
4,638,676	+				+2.1
4,638,676	+				-2.1
4,638,676	+				+0.5
4,638,676	+				+0.4
4,638,677	-				+1.5
4,638,677	-				-1.2
4,638,677	-				-2.7
4,638,677	-				-0.5
4,638,677	-				+0.6
4,638,677	-				-0.3
4,638,677	-				+0.8
4,638,677	-				-0.5
4,638,677	-				+0.0
4,638,677	-				-0.5
4,638,677	-				+0.6
4,638,677	-				+0.1
4,638,677	-				+0.5
4,638,687	+				+0.1
4,638,687	+				-1.2
4,638,687	+				+0.1
4,638,688	-				-0.4
4,638,692	-				+1.2
4,638,692	-				-1.2
4,638,692	-				-0.1
4,638,733	+				+4.4
4,638,734	-				+0.4
4,638,734	-				+0.3
4,638,734	-				-0.6
4,638,734	-				+1.4
4,638,824	+		DDA3937_RS20365	0.13	+0.6
4,638,825	-		DDA3937_RS20365	0.13	-0.7
4,638,964	+		DDA3937_RS20365	0.31	-0.5
4,638,964	+		DDA3937_RS20365	0.31	-0.4
4,639,032	-		DDA3937_RS20365	0.39	-0.4
4,639,109	-		DDA3937_RS20365	0.49	-2.6
4,639,138	+		DDA3937_RS20365	0.53	-0.6
4,639,139	-		DDA3937_RS20365	0.53	-1.9
4,639,151	+		DDA3937_RS20365	0.55	-0.9
4,639,152	-		DDA3937_RS20365	0.55	-0.8
4,639,152	-		DDA3937_RS20365	0.55	+0.7
4,639,250	-		DDA3937_RS20365	0.67	+0.5
4,639,306	+		DDA3937_RS20365	0.74	-0.5
4,639,489	-				-0.3
4,639,489	-				+1.9
4,639,489	-				-2.2
4,639,517	+				+1.7
4,639,517	+				-0.9
4,639,521	+				-0.4
4,639,521	+				-0.5
4,639,522	-				-0.7
4,639,522	-				+0.3
4,639,522	-				+1.8
4,639,533	+				-1.0
4,639,564	+				+1.1
4,639,565	-				-1.8
4,639,565	-				+0.6
4,639,578	+				+0.3
4,639,578	+				-0.1
4,639,578	+				+0.1
4,639,579	-				-0.5
4,639,579	-				-0.9
4,639,579	-				-0.9
4,639,579	-				+0.8
4,639,609	+				+0.2