Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19590

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,454,326	-		DDA3937_RS19585	0.61	-0.3
4,454,326	-		DDA3937_RS19585	0.61	-1.2
4,454,346	+		DDA3937_RS19585	0.64	-3.1
4,454,419	+		DDA3937_RS19585	0.78	+0.5
4,454,419	+		DDA3937_RS19585	0.78	+2.0
4,454,420	-		DDA3937_RS19585	0.78	-0.6
4,454,420	-		DDA3937_RS19585	0.78	+1.1
4,454,420	-		DDA3937_RS19585	0.78	-0.5
4,454,420	-		DDA3937_RS19585	0.78	+0.1
4,454,420	-		DDA3937_RS19585	0.78	+0.1
4,454,420	-		DDA3937_RS19585	0.78	+2.2
4,454,449	+		DDA3937_RS19585	0.83	-0.4
4,454,534	-				+0.4
4,454,534	-				-1.6
4,454,534	-				-2.1
4,454,536	+				-0.4
4,454,536	+				-0.6
4,454,536	+				+0.1
4,454,536	+				+0.2
4,454,536	+				+0.2
4,454,537	-				+0.4
4,454,537	-				-0.1
4,454,537	-				+0.5
4,454,537	-				-1.8
4,454,552	+				-1.2
4,454,553	-				+0.5
4,454,553	-				-0.8
4,454,553	-				-0.0
4,454,554	+				+3.6
4,454,639	-				+0.7
4,454,639	-				-0.9
4,454,669	-				-0.3
4,454,674	+				-0.5
4,454,675	-				-1.5
4,454,675	-				+0.1
4,454,675	-				-0.2
4,454,687	-				-0.9
4,454,687	-				-0.0
4,454,687	-				-1.1
4,454,700	+				-0.4
4,454,701	-				+1.8
4,454,708	-				+0.1
4,454,720	+				+1.3
4,454,721	-				-0.1
4,454,721	-				+0.6
4,454,739	+				+0.5
4,454,769	+				-1.1
4,454,770	-				+0.9
4,454,776	-				+2.3
4,454,776	-				+1.1
4,454,817	-				+0.2
4,454,830	+				-0.3
4,454,830	+				+2.1
4,454,836	-				+0.3
4,454,851	+				-0.1
4,454,851	+				-0.1
4,454,851	+				+0.2
4,454,855	-				-0.2
4,454,875	-				-0.5
4,454,893	-				+1.4
4,454,893	-				+0.1
4,454,943	+				+0.8
4,454,944	-				+2.1
4,454,961	+				-1.9
4,454,961	+				-0.2
4,454,961	+				+0.4
4,454,964	+				+0.7
4,454,975	+				+2.9
4,454,993	+				+0.4
4,455,034	+				+1.3
4,455,337	+				+0.5
4,455,338	-		DDA3937_RS19590	0.18	+1.5
4,455,602	+		DDA3937_RS19590	0.30	-1.5
4,455,850	+		DDA3937_RS19590	0.42	-2.6
4,456,154	+		DDA3937_RS19590	0.56	-0.9
4,456,637	-		DDA3937_RS19590	0.78	-0.9
4,457,038	+				+2.1
4,457,038	+				-0.5
4,457,038	+				+2.3
4,457,039	-				+1.6
4,457,039	-				+0.8
4,457,039	-				+2.8
4,457,042	-				+1.5
4,457,042	-				+2.1
4,457,042	-				+2.2
4,457,042	-				+1.5
4,457,086	+				-1.6
4,457,086	+				-0.7
4,457,086	+				+0.2
4,457,086	+				+0.1
4,457,086	+				-0.4
4,457,086	+				-1.5
4,457,087	-				-0.3
4,457,087	-				+2.0
4,457,087	-				+0.1
4,457,087	-				-0.6
4,457,087	-				-0.9
4,457,087	-				+0.8
4,457,087	-				-0.6
4,457,092	+				-2.7
4,457,136	+				-1.3
4,457,225	+				-0.1
4,457,225	+				-1.4
4,457,225	+				+0.5
4,457,226	-				-1.3
4,457,226	-				-0.4
4,457,226	-				-0.3
4,457,233	+				-2.1
4,457,233	+				-3.1
4,457,233	+				+0.1
4,457,276	+				-0.5
4,457,276	+				-0.4
4,457,276	+				+1.7
4,457,276	+				+0.5
4,457,276	+				+0.1
4,457,276	+				-0.3
4,457,276	+				+0.0
4,457,276	+				-1.3
4,457,277	-				-1.1
4,457,277	-				-0.9
4,457,277	-				+0.3
4,457,277	-				-1.9
4,457,277	-				+0.2
4,457,277	-				+2.6
4,457,277	-				-0.5
4,457,277	-				-0.5
4,457,277	-				+0.1
4,457,277	-				+0.9
4,457,277	-				+1.9
4,457,277	-				-0.4
4,457,277	-				-2.7
4,457,377	+		DDA3937_RS19595	0.12	+0.3
4,457,377	+		DDA3937_RS19595	0.12	+3.2
4,457,377	+				+3.2
4,457,377	+		DDA3937_RS19595	0.12	-2.5
4,457,378	-		DDA3937_RS19595	0.12	-0.5
4,457,464	+		DDA3937_RS19595	0.24	+0.1
4,457,494	+		DDA3937_RS19595	0.29	-0.3
4,457,494	+		DDA3937_RS19595	0.29	-0.5
4,457,495	-		DDA3937_RS19595	0.29	-0.7
4,457,507	-		DDA3937_RS19595	0.30	+0.6
4,457,532	+		DDA3937_RS19595	0.34	+0.6
4,457,536	+		DDA3937_RS19595	0.34	+1.3
4,457,537	-		DDA3937_RS19595	0.35	-0.9
4,457,537	-		DDA3937_RS19595	0.35	-0.8
4,457,537	-		DDA3937_RS19595	0.35	-0.7
4,457,537	-		DDA3937_RS19595	0.35	-0.3
4,457,537	-		DDA3937_RS19595	0.35	+1.1
4,457,537	-		DDA3937_RS19595	0.35	-0.6
4,457,628	+		DDA3937_RS19595	0.48	-1.9
4,457,628	+		DDA3937_RS19595	0.48	-0.3
4,457,629	-		DDA3937_RS19595	0.48	+1.3
4,457,633	+		DDA3937_RS19595	0.48	-0.9
4,457,634	-		DDA3937_RS19595	0.48	+0.1
4,457,672	+		DDA3937_RS19595	0.54	-0.5
4,457,672	+		DDA3937_RS19595	0.54	-1.5
4,457,672	+		DDA3937_RS19595	0.54	+0.4
4,457,673	-		DDA3937_RS19595	0.54	+0.1
4,457,673	-		DDA3937_RS19595	0.54	-0.7
4,457,673	-		DDA3937_RS19595	0.54	-0.2
4,457,673	-		DDA3937_RS19595	0.54	-0.5
4,457,705	+		DDA3937_RS19595	0.58	+0.7
4,457,705	+		DDA3937_RS19595	0.58	+0.5
4,457,706	-				+1.1
4,457,709	-		DDA3937_RS19595	0.59	+0.6
4,457,721	+		DDA3937_RS19595	0.61	-1.3
4,457,721	+		DDA3937_RS19595	0.61	-0.3
4,457,721	+		DDA3937_RS19595	0.61	-0.6
4,457,722	-		DDA3937_RS19595	0.61	+1.4
4,457,722	-		DDA3937_RS19595	0.61	-1.7
4,457,725	+		DDA3937_RS19595	0.61	-0.1
4,457,725	+		DDA3937_RS19595	0.61	-0.2
4,457,726	-		DDA3937_RS19595	0.61	+0.0
4,457,753	+		DDA3937_RS19595	0.65	+0.7
4,457,797	-		DDA3937_RS19595	0.71	+1.3
4,457,857	+		DDA3937_RS19595	0.80	+1.9
4,457,857	+		DDA3937_RS19595	0.80	-0.1
4,457,874	+		DDA3937_RS19595	0.82	-0.5
4,457,874	+		DDA3937_RS19595	0.82	-0.5
4,457,875	-		DDA3937_RS19595	0.83	-0.6
4,457,935	+				-1.5
4,457,935	+				+1.2
4,457,935	+				-1.1
4,457,936	-				-0.7