Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18315

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18310 and DDA3937_RS18315 are separated by 453 nucleotidesDDA3937_RS18315 and DDA3937_RS18320 are separated by 240 nucleotides DDA3937_RS18310: DDA3937_RS18310 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 4,182,054 to 4,183,199 _RS18310 DDA3937_RS18315: DDA3937_RS18315 - 4-hydroxy-tetrahydrodipicolinate reductase, at 4,183,653 to 4,184,474 _RS18315 DDA3937_RS18320: DDA3937_RS18320 - ribonucleoside hydrolase RihC, at 4,184,715 to 4,185,632 _RS18320 Position (kb) 4183 4184 4185Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 4182.695 kb on + strand, within DDA3937_RS18310at 4182.695 kb on + strand, within DDA3937_RS18310at 4182.695 kb on + strand, within DDA3937_RS18310at 4182.695 kb on + strand, within DDA3937_RS18310at 4182.696 kb on - strand, within DDA3937_RS18310at 4182.696 kb on - strand, within DDA3937_RS18310at 4182.696 kb on - strand, within DDA3937_RS18310at 4182.696 kb on - strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.697 kb on + strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.698 kb on - strand, within DDA3937_RS18310at 4182.926 kb on - strand, within DDA3937_RS18310at 4182.946 kb on - strand, within DDA3937_RS18310at 4182.946 kb on - strand, within DDA3937_RS18310at 4183.030 kb on + strand, within DDA3937_RS18310at 4183.031 kb on - strand, within DDA3937_RS18310at 4183.031 kb on - strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strandat 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.034 kb on + strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.035 kb on - strand, within DDA3937_RS18310at 4183.057 kb on + strand, within DDA3937_RS18310at 4183.058 kb on - strand, within DDA3937_RS18310at 4183.058 kb on - strand, within DDA3937_RS18310at 4183.058 kb on - strand, within DDA3937_RS18310at 4183.101 kb on - strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.259 kb on + strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.260 kb on - strandat 4183.282 kb on + strandat 4183.282 kb on + strandat 4183.283 kb on - strandat 4183.283 kb on - strandat 4183.283 kb on - strandat 4183.330 kb on + strandat 4183.330 kb on + strandat 4183.330 kb on + strandat 4183.331 kb on - strandat 4183.337 kb on + strandat 4183.337 kb on + strandat 4183.337 kb on + strandat 4183.374 kb on - strandat 4183.381 kb on + strandat 4183.453 kb on + strandat 4183.454 kb on - strandat 4183.454 kb on - strandat 4183.644 kb on - strandat 4184.475 kb on - strandat 4184.475 kb on - strandat 4184.487 kb on + strandat 4184.487 kb on + strandat 4184.487 kb on + strandat 4184.487 kb on + strandat 4184.488 kb on - strandat 4184.559 kb on + strandat 4184.560 kb on - strandat 4184.560 kb on - strandat 4184.564 kb on - strandat 4184.603 kb on + strandat 4184.604 kb on - strandat 4184.604 kb on - strandat 4184.655 kb on + strandat 4184.656 kb on - strandat 4184.846 kb on - strand, within DDA3937_RS18320at 4184.876 kb on - strand, within DDA3937_RS18320at 4184.876 kb on - strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.937 kb on - strand, within DDA3937_RS18320at 4184.968 kb on + strand, within DDA3937_RS18320at 4185.059 kb on + strand, within DDA3937_RS18320at 4185.200 kb on + strand, within DDA3937_RS18320at 4185.201 kb on - strand, within DDA3937_RS18320at 4185.212 kb on + strand, within DDA3937_RS18320at 4185.246 kb on - strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,182,695 + DDA3937_RS18310 0.56 -2.1
4,182,695 + DDA3937_RS18310 0.56 -4.7
4,182,695 + DDA3937_RS18310 0.56 -0.7
4,182,695 + DDA3937_RS18310 0.56 -2.0
4,182,696 - DDA3937_RS18310 0.56 -1.0
4,182,696 - DDA3937_RS18310 0.56 -1.6
4,182,696 - DDA3937_RS18310 0.56 -5.6
4,182,696 - DDA3937_RS18310 0.56 -3.0
4,182,697 + DDA3937_RS18310 0.56 -3.8
4,182,697 + DDA3937_RS18310 0.56 -3.9
4,182,697 + DDA3937_RS18310 0.56 -2.4
4,182,697 + DDA3937_RS18310 0.56 -4.0
4,182,697 + DDA3937_RS18310 0.56 -2.6
4,182,697 + DDA3937_RS18310 0.56 -1.0
4,182,697 + DDA3937_RS18310 0.56 -2.0
4,182,697 + DDA3937_RS18310 0.56 -2.6
4,182,697 + DDA3937_RS18310 0.56 -4.6
4,182,698 - DDA3937_RS18310 0.56 -5.2
4,182,698 - DDA3937_RS18310 0.56 -1.8
4,182,698 - DDA3937_RS18310 0.56 -0.6
4,182,698 - DDA3937_RS18310 0.56 +0.7
4,182,698 - DDA3937_RS18310 0.56 -1.0
4,182,698 - DDA3937_RS18310 0.56 -3.3
4,182,698 - DDA3937_RS18310 0.56 -4.8
4,182,926 - DDA3937_RS18310 0.76 -4.0
4,182,946 - DDA3937_RS18310 0.78 -2.6
4,182,946 - DDA3937_RS18310 0.78 -3.0
4,183,030 + DDA3937_RS18310 0.85 -5.0
4,183,031 - DDA3937_RS18310 0.85 -2.4
4,183,031 - DDA3937_RS18310 0.85 -2.9
4,183,034 + DDA3937_RS18310 0.86 -1.0
4,183,034 + DDA3937_RS18310 0.86 -1.4
4,183,034 + DDA3937_RS18310 0.86 -2.4
4,183,034 + +3.3
4,183,034 + DDA3937_RS18310 0.86 -1.9
4,183,034 + DDA3937_RS18310 0.86 -3.7
4,183,034 + DDA3937_RS18310 0.86 -3.1
4,183,034 + DDA3937_RS18310 0.86 -4.0
4,183,034 + DDA3937_RS18310 0.86 -1.0
4,183,034 + DDA3937_RS18310 0.86 -3.2
4,183,034 + DDA3937_RS18310 0.86 -0.9
4,183,034 + DDA3937_RS18310 0.86 -1.4
4,183,034 + DDA3937_RS18310 0.86 -2.6
4,183,035 - DDA3937_RS18310 0.86 -2.2
4,183,035 - DDA3937_RS18310 0.86 -3.6
4,183,035 - DDA3937_RS18310 0.86 -1.6
4,183,035 - DDA3937_RS18310 0.86 -1.9
4,183,035 - DDA3937_RS18310 0.86 -2.5
4,183,035 - DDA3937_RS18310 0.86 -4.5
4,183,035 - DDA3937_RS18310 0.86 -3.7
4,183,035 - DDA3937_RS18310 0.86 -1.6
4,183,035 - DDA3937_RS18310 0.86 -1.0
4,183,035 - DDA3937_RS18310 0.86 -1.6
4,183,035 - DDA3937_RS18310 0.86 -4.6
4,183,035 - DDA3937_RS18310 0.86 -3.1
4,183,035 - DDA3937_RS18310 0.86 -1.0
4,183,057 + DDA3937_RS18310 0.88 -1.0
4,183,058 - DDA3937_RS18310 0.88 -1.9
4,183,058 - DDA3937_RS18310 0.88 -3.8
4,183,058 - DDA3937_RS18310 0.88 -1.4
4,183,101 - -1.6
4,183,259 + -0.6
4,183,259 + -2.6
4,183,259 + -1.1
4,183,259 + -1.6
4,183,259 + -3.6
4,183,259 + -3.5
4,183,259 + +1.0
4,183,260 - +2.3
4,183,260 - +0.7
4,183,260 - +0.3
4,183,260 - +2.4
4,183,260 - +1.5
4,183,260 - -1.3
4,183,260 - +1.7
4,183,260 - +0.2
4,183,282 + -1.1
4,183,282 + -1.0
4,183,283 - -0.0
4,183,283 - -0.9
4,183,283 - -0.4
4,183,330 + -0.4
4,183,330 + -0.6
4,183,330 + +1.8
4,183,331 - +0.4
4,183,337 + +0.8
4,183,337 + -0.0
4,183,337 + +1.0
4,183,374 - -1.0
4,183,381 + -1.2
4,183,453 + +0.1
4,183,454 - +1.5
4,183,454 - +0.3
4,183,644 - +0.5
4,184,475 - -8.0
4,184,475 - -1.6
4,184,487 + -2.6
4,184,487 + -0.6
4,184,487 + -2.2
4,184,487 + -3.9
4,184,488 - +0.9
4,184,559 + -0.6
4,184,560 - -1.2
4,184,560 - +0.8
4,184,564 - -0.0
4,184,603 + +3.6
4,184,604 - -0.6
4,184,604 - +3.2
4,184,655 + -0.9
4,184,656 - -0.0
4,184,846 - DDA3937_RS18320 0.14 -0.9
4,184,876 - DDA3937_RS18320 0.18 -1.0
4,184,876 - DDA3937_RS18320 0.18 -0.2
4,184,911 + DDA3937_RS18320 0.21 -1.6
4,184,911 + DDA3937_RS18320 0.21 -2.0
4,184,911 + DDA3937_RS18320 0.21 +1.0
4,184,925 + DDA3937_RS18320 0.23 -0.6
4,184,925 + DDA3937_RS18320 0.23 -0.8
4,184,925 + DDA3937_RS18320 0.23 -1.2
4,184,925 + DDA3937_RS18320 0.23 -1.4
4,184,925 + DDA3937_RS18320 0.23 -0.3
4,184,926 - DDA3937_RS18320 0.23 -0.6
4,184,926 - DDA3937_RS18320 0.23 +0.7
4,184,926 - DDA3937_RS18320 0.23 -1.9
4,184,926 - DDA3937_RS18320 0.23 -0.0
4,184,937 - DDA3937_RS18320 0.24 -1.0
4,184,968 + DDA3937_RS18320 0.28 -0.6
4,185,059 + DDA3937_RS18320 0.37 +1.0
4,185,200 + DDA3937_RS18320 0.53 +1.2
4,185,201 - DDA3937_RS18320 0.53 +0.3
4,185,212 + DDA3937_RS18320 0.54 -0.7
4,185,246 - DDA3937_RS18320 0.58 -1.6
4,185,307 + DDA3937_RS18320 0.64 +0.4
4,185,307 + DDA3937_RS18320 0.64 -0.4
4,185,307 + DDA3937_RS18320 0.64 +0.0
4,185,307 + DDA3937_RS18320 0.64 -1.4
4,185,307 + DDA3937_RS18320 0.64 -0.5
4,185,307 + DDA3937_RS18320 0.64 -0.4
4,185,307 + DDA3937_RS18320 0.64 +1.5
4,185,307 + DDA3937_RS18320 0.64 -0.3
4,185,308 - DDA3937_RS18320 0.65 +0.2
4,185,308 - DDA3937_RS18320 0.65 -0.9
4,185,308 - DDA3937_RS18320 0.65 -1.8
4,185,308 - DDA3937_RS18320 0.65 +0.4
4,185,308 - DDA3937_RS18320 0.65 +0.3
4,185,308 - DDA3937_RS18320 0.65 -0.0
4,185,308 - DDA3937_RS18320 0.65 -0.0
4,185,308 - DDA3937_RS18320 0.65 +0.9
4,185,394 + DDA3937_RS18320 0.74 -2.6
4,185,394 + DDA3937_RS18320 0.74 +0.5
4,185,394 + DDA3937_RS18320 0.74 +1.1
4,185,395 - DDA3937_RS18320 0.74 -0.5
4,185,395 - DDA3937_RS18320 0.74 -1.6
4,185,395 - DDA3937_RS18320 0.74 -1.3

Or see this region's nucleotide sequence