Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18105

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,130,413	-		DDA3937_RS18095	0.76	-0.8
4,130,517	+		DDA3937_RS18095	0.86	+2.2
4,130,594	-				+0.3
4,130,602	-				+1.1
4,130,713	+				-1.7
4,130,714	-				+2.5
4,130,714	-				-0.2
4,130,724	-				-1.7
4,130,728	+				-1.0
4,130,729	-				-1.4
4,130,736	+				+0.0
4,130,769	+				+0.9
4,130,770	-				-1.4
4,130,770	-				+0.7
4,130,773	-				+0.5
4,130,776	+				-0.1
4,130,776	+				+0.5
4,130,777	-				-1.3
4,130,777	-				+1.0
4,130,777	-				-1.1
4,130,822	+				+0.3
4,130,822	+				+1.1
4,130,822	+				-0.7
4,130,822	+				+0.9
4,130,822	+				-1.2
4,130,822	+				+0.5
4,130,825	+				+0.2
4,130,825	+				+1.3
4,130,825	+				+0.2
4,130,825	+				-1.1
4,130,825	+				+1.0
4,130,826	-				-0.2
4,130,826	-				-0.1
4,130,826	-				-1.8
4,130,843	+				+1.2
4,130,844	-				+0.6
4,130,844	-				+0.6
4,130,851	+				-1.7
4,131,031	+		DDA3937_RS18100	0.27	-2.2
4,131,033	+		DDA3937_RS18100	0.27	-0.5
4,131,033	+		DDA3937_RS18100	0.27	+0.1
4,131,034	-		DDA3937_RS18100	0.27	-0.5
4,131,150	+		DDA3937_RS18100	0.51	-3.1
4,131,150	+		DDA3937_RS18100	0.51	-1.4
4,131,150	+		DDA3937_RS18100	0.51	-0.5
4,131,150	+		DDA3937_RS18100	0.51	+0.5
4,131,150	+		DDA3937_RS18100	0.51	+1.3
4,131,150	+		DDA3937_RS18100	0.51	-0.4
4,131,150	+		DDA3937_RS18100	0.51	-0.7
4,131,150	+		DDA3937_RS18100	0.51	+0.5
4,131,150	+		DDA3937_RS18100	0.51	-0.7
4,131,150	+		DDA3937_RS18100	0.51	+0.7
4,131,150	+		DDA3937_RS18100	0.51	+0.5
4,131,151	-		DDA3937_RS18100	0.51	-1.4
4,131,151	-		DDA3937_RS18100	0.51	-0.1
4,131,151	-		DDA3937_RS18100	0.51	+0.0
4,131,151	-		DDA3937_RS18100	0.51	+0.1
4,131,151	-		DDA3937_RS18100	0.51	-1.6
4,131,151	-				-0.7
4,131,151	-		DDA3937_RS18100	0.51	-1.7
4,131,151	-		DDA3937_RS18100	0.51	+0.1
4,131,151	-		DDA3937_RS18100	0.51	-2.4
4,131,151	-		DDA3937_RS18100	0.51	-0.1
4,131,151	-		DDA3937_RS18100	0.51	+0.2
4,131,151	-		DDA3937_RS18100	0.51	+0.6
4,131,197	-		DDA3937_RS18100	0.60	-0.4
4,131,197	-		DDA3937_RS18100	0.60	-1.1
4,131,197	-		DDA3937_RS18100	0.60	+0.1
4,131,382	+				+1.2
4,131,383	-				+0.9
4,131,415	+				+0.9
4,131,555	+				-0.8
4,131,564	+				-0.3
4,131,565	-				-1.0
4,131,565	-				-0.7
4,131,565	-				-0.0
4,131,580	+		DDA3937_RS18105	0.11	-1.2
4,131,582	-		DDA3937_RS18105	0.11	-0.1
4,131,582	-		DDA3937_RS18105	0.11	-0.1
4,131,582	-		DDA3937_RS18105	0.11	+0.4
4,131,623	+		DDA3937_RS18105	0.13	+1.7
4,131,623	+		DDA3937_RS18105	0.13	+1.3
4,131,623	+		DDA3937_RS18105	0.13	+0.4
4,131,623	+		DDA3937_RS18105	0.13	-1.4
4,131,623	+		DDA3937_RS18105	0.13	+0.4
4,131,624	-		DDA3937_RS18105	0.13	+0.9
4,131,624	-		DDA3937_RS18105	0.13	-0.8
4,131,624	-		DDA3937_RS18105	0.13	+0.4
4,131,624	-		DDA3937_RS18105	0.13	-0.4
4,131,647	+		DDA3937_RS18105	0.15	-1.0
4,131,647	+		DDA3937_RS18105	0.15	-0.8
4,131,647	+		DDA3937_RS18105	0.15	-1.1
4,131,648	-		DDA3937_RS18105	0.15	-0.4
4,131,722	+		DDA3937_RS18105	0.19	-2.2
4,131,723	-		DDA3937_RS18105	0.19	-1.0
4,131,723	-		DDA3937_RS18105	0.19	-0.8
4,131,751	-		DDA3937_RS18105	0.21	-0.8
4,131,899	+		DDA3937_RS18105	0.29	-1.7
4,131,899	+		DDA3937_RS18105	0.29	-0.1
4,131,899	+		DDA3937_RS18105	0.29	+0.0
4,131,899	+		DDA3937_RS18105	0.29	+0.1
4,131,899	+		DDA3937_RS18105	0.29	-1.2
4,131,900	-		DDA3937_RS18105	0.29	+0.1
4,131,900	-		DDA3937_RS18105	0.29	-1.1
4,131,900	-		DDA3937_RS18105	0.29	-0.5
4,131,900	-		DDA3937_RS18105	0.29	-0.3
4,131,944	+		DDA3937_RS18105	0.32	-0.7
4,131,944	+		DDA3937_RS18105	0.32	+0.2
4,131,944	+		DDA3937_RS18105	0.32	+0.4
4,131,944	+		DDA3937_RS18105	0.32	+0.4
4,131,944	+		DDA3937_RS18105	0.32	-0.1
4,131,945	-		DDA3937_RS18105	0.32	-0.5
4,131,945	-		DDA3937_RS18105	0.32	-0.7
4,132,019	+		DDA3937_RS18105	0.36	-1.4
4,132,020	-		DDA3937_RS18105	0.36	-0.1
4,132,053	+		DDA3937_RS18105	0.38	-0.7
4,132,235	+		DDA3937_RS18105	0.49	+0.3
4,132,235	+		DDA3937_RS18105	0.49	-1.1
4,132,235	+		DDA3937_RS18105	0.49	-0.2
4,132,236	-		DDA3937_RS18105	0.49	+1.0
4,132,236	-		DDA3937_RS18105	0.49	-0.8
4,132,236	-		DDA3937_RS18105	0.49	+0.1
4,132,236	-		DDA3937_RS18105	0.49	+0.2
4,132,239	+		DDA3937_RS18105	0.49	-0.1
4,132,239	+		DDA3937_RS18105	0.49	-1.1
4,132,240	-		DDA3937_RS18105	0.49	-0.2
4,132,240	-		DDA3937_RS18105	0.49	+1.9
4,132,240	-		DDA3937_RS18105	0.49	+0.3
4,132,240	-		DDA3937_RS18105	0.49	-0.4
4,132,325	+		DDA3937_RS18105	0.54	-0.2
4,132,326	-		DDA3937_RS18105	0.54	-2.7
4,132,326	-		DDA3937_RS18105	0.54	+1.8
4,132,326	-		DDA3937_RS18105	0.54	+0.0
4,132,347	+		DDA3937_RS18105	0.55	+1.3
4,132,482	-		DDA3937_RS18105	0.63	-0.4
4,132,528	+				+0.9
4,132,529	-		DDA3937_RS18105	0.66	+0.2
4,132,539	+		DDA3937_RS18105	0.66	-0.7
4,132,539	+		DDA3937_RS18105	0.66	-2.2
4,132,540	-		DDA3937_RS18105	0.67	+0.5
4,132,540	-		DDA3937_RS18105	0.67	-1.1
4,132,540	-		DDA3937_RS18105	0.67	-2.4
4,132,540	-		DDA3937_RS18105	0.67	-2.2
4,132,540	-		DDA3937_RS18105	0.67	-0.1
4,132,540	-		DDA3937_RS18105	0.67	-0.2
4,132,540	-		DDA3937_RS18105	0.67	+0.2
4,132,562	+		DDA3937_RS18105	0.68	+1.3
4,132,562	+		DDA3937_RS18105	0.68	+1.2
4,132,562	+		DDA3937_RS18105	0.68	-2.0
4,132,563	-		DDA3937_RS18105	0.68	+0.3
4,132,563	-		DDA3937_RS18105	0.68	-0.2
4,132,563	-		DDA3937_RS18105	0.68	+0.2
4,132,595	+		DDA3937_RS18105	0.70	-0.1
4,132,595	+		DDA3937_RS18105	0.70	+1.8
4,132,595	+		DDA3937_RS18105	0.70	+0.3
4,132,595	+		DDA3937_RS18105	0.70	+0.2
4,132,595	+		DDA3937_RS18105	0.70	-0.9
4,132,596	-		DDA3937_RS18105	0.70	+0.6
4,132,596	-		DDA3937_RS18105	0.70	-0.7
4,132,596	-		DDA3937_RS18105	0.70	-1.4
4,132,596	-		DDA3937_RS18105	0.70	-0.9
4,132,676	+		DDA3937_RS18105	0.74	-1.2
4,132,676	+		DDA3937_RS18105	0.74	-1.9
4,132,676	+		DDA3937_RS18105	0.74	-0.6
4,132,677	-		DDA3937_RS18105	0.75	+1.7
4,132,677	-		DDA3937_RS18105	0.75	-0.5
4,132,677	-		DDA3937_RS18105	0.75	-3.2
4,132,677	-		DDA3937_RS18105	0.75	-0.7
4,132,704	+		DDA3937_RS18105	0.76	+0.8
4,132,705	-		DDA3937_RS18105	0.76	+1.7
4,132,705	-		DDA3937_RS18105	0.76	-1.1
4,132,727	+		DDA3937_RS18105	0.77	-0.1
4,132,727	+		DDA3937_RS18105	0.77	-1.1
4,132,727	+		DDA3937_RS18105	0.77	+0.6
4,132,727	+		DDA3937_RS18105	0.77	-0.1
4,132,727	+		DDA3937_RS18105	0.77	-2.1
4,132,728	-		DDA3937_RS18105	0.77	+0.5
4,132,728	-		DDA3937_RS18105	0.77	-2.1
4,132,728	-		DDA3937_RS18105	0.77	-1.7
4,132,728	-		DDA3937_RS18105	0.77	-3.0
4,132,788	-		DDA3937_RS18105	0.81	-1.7
4,132,788	-		DDA3937_RS18105	0.81	-1.5
4,132,845	+		DDA3937_RS18105	0.84	-0.7
4,132,845	+		DDA3937_RS18105	0.84	-0.8
4,132,845	+		DDA3937_RS18105	0.84	-1.1
4,132,846	-		DDA3937_RS18105	0.84	+0.4
4,132,846	-		DDA3937_RS18105	0.84	+0.6
4,132,847	+		DDA3937_RS18105	0.84	+0.1
4,132,847	+		DDA3937_RS18105	0.84	-0.0
4,132,847	+		DDA3937_RS18105	0.84	+0.6
4,132,847	+		DDA3937_RS18105	0.84	-0.8
4,132,847	+		DDA3937_RS18105	0.84	-1.3
4,132,847	+		DDA3937_RS18105	0.84	-0.2
4,132,847	+		DDA3937_RS18105	0.84	+0.9
4,132,847	+		DDA3937_RS18105	0.84	-0.7
4,132,848	-		DDA3937_RS18105	0.84	-1.3
4,132,848	-		DDA3937_RS18105	0.84	+0.6
4,132,848	-		DDA3937_RS18105	0.84	+0.6
4,132,848	-		DDA3937_RS18105	0.84	-1.2
4,132,947	+				+0.6
4,132,947	+				-0.3
4,132,947	+				-0.8
4,132,947	+				-0.2
4,132,947	+				-0.0
4,132,948	-				-1.4
4,132,948	-				-0.8
4,132,948	-				-0.2
4,132,948	-				-1.8
4,132,951	+				+1.3
4,132,951	+				-0.7
4,132,951	+				+0.1
4,132,952	-				+0.9
4,132,952	-				+0.5
4,132,987	+				+1.2
4,132,987	+				+0.9
4,132,987	+				+0.3
4,132,987	+				+2.1
4,132,988	-				+0.8
4,132,988	-				+0.0
4,132,988	-				-0.1
4,133,015	+				-3.3
4,133,015	+				-0.2
4,133,015	+				-0.4
4,133,015	+				+0.2
4,133,015	+				+0.7
4,133,015	+				+1.6
4,133,015	+				+0.0
4,133,015	+				-1.9
4,133,016	-				+0.3
4,133,016	-				+3.4
4,133,016	-				-0.4
4,133,016	-				+0.7
4,133,016	-				-0.1
4,133,016	-				-1.2
4,133,016	-				+0.1
4,133,019	+				-1.4
4,133,128	+				-0.3
4,133,128	+				+1.0
4,133,129	-				+0.5
4,133,129	-				-0.1
4,133,155	+				-0.5
4,133,156	-				-0.8
4,133,171	+				-2.5
4,133,206	+				-0.1
4,133,215	+				-0.7
4,133,215	+				-0.1
4,133,215	+				-0.5
4,133,215	+				+0.5
4,133,216	-				-1.6
4,133,216	-				-1.1
4,133,216	-				-1.9
4,133,216	-				+0.4
4,133,216	-				-1.2
4,133,229	+				-1.4
4,133,229	+				-1.4
4,133,230	-				-0.7
4,133,230	-				+1.6
4,133,230	-				-0.6
4,133,285	-				+1.4
4,133,288	+				+0.0
4,133,289	-				-1.1
4,133,289	-				+0.3
4,133,290	+				-1.2
4,133,290	+				+0.3
4,133,291	-				+0.3
4,133,291	-				-1.0
4,133,291	-				-1.5
4,133,291	-				-1.0
4,133,295	+				-0.8
4,133,295	+				+0.4
4,133,295	+				-0.7
4,133,295	+				-2.4
4,133,296	-				-0.1
4,133,296	-				+0.9
4,133,296	-				-1.4
4,133,304	-				+1.1
4,133,358	+				-0.5
4,133,358	+				-0.2
4,133,359	-				-0.3
4,133,359	-				+0.6
4,133,363	+				-0.3
4,133,363	+				-0.7
4,133,364	-				-0.5
4,133,375	+				-0.1
4,133,375	+				+0.1
4,133,375	+				+2.1
4,133,395	+				-0.3
4,133,396	-				-1.3
4,133,396	-				-0.4
4,133,450	+				-0.2
4,133,463	-				-0.9
4,133,497	-				-1.5
4,133,497	-				+2.3
4,133,523	+				-2.4
4,133,523	+				-0.8
4,133,524	-				+0.5
4,133,524	-				+1.9
4,133,524	-				-1.0
4,133,524	-				+1.1
4,133,547	+				+0.6
4,133,548	-				-0.1
4,133,580	-				+0.5
4,133,767	-		DDA3937_RS18110	0.14	-0.2
4,133,767	-		DDA3937_RS18110	0.14	-1.7
4,133,767	-		DDA3937_RS18110	0.14	-0.1
4,133,767	-		DDA3937_RS18110	0.14	+0.0
4,133,811	+		DDA3937_RS18110	0.17	+0.3
4,133,811	+		DDA3937_RS18110	0.17	-0.6
4,133,811	+		DDA3937_RS18110	0.17	-1.2
4,133,811	+		DDA3937_RS18110	0.17	-1.1
4,133,812	-		DDA3937_RS18110	0.17	+0.6
4,133,812	-		DDA3937_RS18110	0.17	-2.5
4,133,812	-		DDA3937_RS18110	0.17	-0.1
4,133,893	+		DDA3937_RS18110	0.21	+1.2
4,133,894	-		DDA3937_RS18110	0.21	+0.1
4,133,895	+		DDA3937_RS18110	0.21	-0.0
4,133,895	+		DDA3937_RS18110	0.21	+0.9
4,133,895	+		DDA3937_RS18110	0.21	-0.1
4,133,895	+		DDA3937_RS18110	0.21	-0.5
4,133,895	+		DDA3937_RS18110	0.21	-0.5
4,133,895	+		DDA3937_RS18110	0.21	-1.7
4,133,895	+		DDA3937_RS18110	0.21	-0.1
4,133,896	-		DDA3937_RS18110	0.21	-1.6
4,133,900	-		DDA3937_RS18110	0.21	-0.3
4,133,900	-		DDA3937_RS18110	0.21	+0.4
4,134,095	+		DDA3937_RS18110	0.32	-0.2
4,134,095	+		DDA3937_RS18110	0.32	-1.0
4,134,096	-		DDA3937_RS18110	0.32	+2.9