Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS17105 and DDA3937_RS17110 are separated by 125 nucleotides DDA3937_RS17110 and DDA3937_RS17115 are separated by 308 nucleotides
DDA3937_RS17105: DDA3937_RS17105 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 3,895,152 to 3,898,001
_RS17105
DDA3937_RS17110: DDA3937_RS17110 - inorganic triphosphatase, at 3,898,127 to 3,899,458
_RS17110
DDA3937_RS17115: DDA3937_RS17115 - SH3 domain-containing protein, at 3,899,767 to 3,900,387
_RS17115
Position (kb)
3898
3899
3900 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3897.172 kb on + strand, within DDA3937_RS17105 at 3897.172 kb on + strand, within DDA3937_RS17105 at 3897.173 kb on - strand, within DDA3937_RS17105 at 3897.173 kb on - strand, within DDA3937_RS17105 at 3897.173 kb on - strand, within DDA3937_RS17105 at 3897.217 kb on + strand, within DDA3937_RS17105 at 3897.218 kb on - strand, within DDA3937_RS17105 at 3897.248 kb on - strand, within DDA3937_RS17105 at 3897.250 kb on + strand, within DDA3937_RS17105 at 3897.250 kb on + strand, within DDA3937_RS17105 at 3897.250 kb on + strand, within DDA3937_RS17105 at 3897.250 kb on + strand, within DDA3937_RS17105 at 3897.250 kb on + strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.251 kb on - strand, within DDA3937_RS17105 at 3897.578 kb on + strand, within DDA3937_RS17105 at 3897.580 kb on + strand, within DDA3937_RS17105 at 3897.580 kb on + strand, within DDA3937_RS17105 at 3897.581 kb on - strand, within DDA3937_RS17105 at 3897.581 kb on - strand, within DDA3937_RS17105 at 3897.654 kb on - strand, within DDA3937_RS17105 at 3898.058 kb on - strand at 3898.103 kb on + strand at 3898.174 kb on + strand at 3898.175 kb on - strand at 3898.199 kb on + strand at 3898.199 kb on + strand at 3898.201 kb on + strand at 3898.202 kb on - strand at 3898.261 kb on - strand, within DDA3937_RS17110 at 3898.261 kb on - strand, within DDA3937_RS17110 at 3898.335 kb on - strand, within DDA3937_RS17110 at 3898.347 kb on + strand, within DDA3937_RS17110 at 3898.347 kb on + strand, within DDA3937_RS17110 at 3898.348 kb on - strand, within DDA3937_RS17110 at 3898.348 kb on - strand, within DDA3937_RS17110 at 3898.471 kb on - strand, within DDA3937_RS17110 at 3898.527 kb on + strand, within DDA3937_RS17110 at 3898.539 kb on + strand, within DDA3937_RS17110 at 3898.540 kb on - strand, within DDA3937_RS17110 at 3898.731 kb on + strand, within DDA3937_RS17110 at 3898.731 kb on + strand, within DDA3937_RS17110 at 3898.732 kb on - strand, within DDA3937_RS17110 at 3898.732 kb on - strand, within DDA3937_RS17110 at 3898.744 kb on + strand, within DDA3937_RS17110 at 3898.745 kb on - strand, within DDA3937_RS17110 at 3898.745 kb on - strand, within DDA3937_RS17110 at 3898.753 kb on - strand, within DDA3937_RS17110 at 3898.792 kb on + strand, within DDA3937_RS17110 at 3898.793 kb on - strand, within DDA3937_RS17110 at 3898.793 kb on - strand, within DDA3937_RS17110 at 3898.800 kb on - strand, within DDA3937_RS17110 at 3898.893 kb on - strand, within DDA3937_RS17110 at 3899.025 kb on - strand, within DDA3937_RS17110 at 3899.097 kb on - strand, within DDA3937_RS17110 at 3899.161 kb on + strand, within DDA3937_RS17110 at 3899.162 kb on - strand, within DDA3937_RS17110 at 3899.193 kb on + strand, within DDA3937_RS17110 at 3899.193 kb on + strand, within DDA3937_RS17110 at 3899.193 kb on + strand, within DDA3937_RS17110 at 3899.193 kb on + strand, within DDA3937_RS17110 at 3899.194 kb on - strand, within DDA3937_RS17110 at 3899.304 kb on + strand, within DDA3937_RS17110 at 3899.304 kb on + strand, within DDA3937_RS17110 at 3899.304 kb on + strand, within DDA3937_RS17110 at 3899.323 kb on - strand, within DDA3937_RS17110 at 3899.326 kb on - strand at 3899.330 kb on - strand at 3899.330 kb on - strand at 3899.330 kb on - strand at 3899.431 kb on + strand at 3899.458 kb on + strand at 3899.458 kb on + strand at 3899.459 kb on - strand at 3899.459 kb on - strand at 3899.459 kb on - strand at 3899.497 kb on - strand at 3899.497 kb on - strand at 3899.500 kb on + strand at 3899.500 kb on + strand at 3899.509 kb on - strand at 3899.509 kb on - strand at 3899.608 kb on + strand at 3899.608 kb on + strand at 3899.633 kb on - strand at 3899.677 kb on + strand at 3899.678 kb on - strand at 3899.678 kb on - strand at 3899.678 kb on - strand at 3899.678 kb on - strand at 3899.735 kb on - strand at 3899.752 kb on - strand at 3899.845 kb on + strand, within DDA3937_RS17115 at 3899.845 kb on + strand, within DDA3937_RS17115 at 3899.847 kb on + strand, within DDA3937_RS17115 at 3899.848 kb on - strand, within DDA3937_RS17115 at 3899.848 kb on - strand, within DDA3937_RS17115 at 3899.848 kb on - strand, within DDA3937_RS17115 at 3899.848 kb on - strand, within DDA3937_RS17115 at 3899.869 kb on + strand, within DDA3937_RS17115 at 3899.870 kb on - strand, within DDA3937_RS17115 at 3899.870 kb on - strand, within DDA3937_RS17115 at 3899.870 kb on - strand, within DDA3937_RS17115 at 3899.870 kb on - strand, within DDA3937_RS17115 at 3899.941 kb on - strand, within DDA3937_RS17115 at 3899.966 kb on - strand, within DDA3937_RS17115 at 3900.094 kb on - strand, within DDA3937_RS17115 at 3900.237 kb on - strand, within DDA3937_RS17115 at 3900.288 kb on + strand, within DDA3937_RS17115 at 3900.288 kb on + strand, within DDA3937_RS17115 at 3900.288 kb on + strand, within DDA3937_RS17115 at 3900.288 kb on + strand, within DDA3937_RS17115 at 3900.292 kb on + strand, within DDA3937_RS17115 at 3900.292 kb on + strand, within DDA3937_RS17115 at 3900.292 kb on + strand, within DDA3937_RS17115 at 3900.292 kb on + strand, within DDA3937_RS17115 at 3900.292 kb on + strand, within DDA3937_RS17115 at 3900.293 kb on - strand, within DDA3937_RS17115 at 3900.332 kb on + strand at 3900.332 kb on + strand at 3900.333 kb on - strand at 3900.360 kb on + strand at 3900.361 kb on - strand at 3900.361 kb on - strand at 3900.386 kb on - strand at 3900.386 kb on - strand at 3900.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,897,172 + DDA3937_RS17105 0.71 +0.3 3,897,172 + DDA3937_RS17105 0.71 -0.9 3,897,173 - DDA3937_RS17105 0.71 -0.5 3,897,173 - DDA3937_RS17105 0.71 -0.4 3,897,173 - DDA3937_RS17105 0.71 +1.6 3,897,217 + DDA3937_RS17105 0.72 +0.3 3,897,218 - DDA3937_RS17105 0.72 +0.7 3,897,248 - DDA3937_RS17105 0.74 +0.3 3,897,250 + DDA3937_RS17105 0.74 +1.6 3,897,250 + DDA3937_RS17105 0.74 -0.7 3,897,250 + DDA3937_RS17105 0.74 +2.2 3,897,250 + DDA3937_RS17105 0.74 +0.1 3,897,250 + DDA3937_RS17105 0.74 -0.1 3,897,251 - DDA3937_RS17105 0.74 +1.9 3,897,251 - DDA3937_RS17105 0.74 -1.2 3,897,251 - DDA3937_RS17105 0.74 +0.9 3,897,251 - DDA3937_RS17105 0.74 -0.1 3,897,251 - DDA3937_RS17105 0.74 +1.4 3,897,251 - DDA3937_RS17105 0.74 +0.9 3,897,578 + DDA3937_RS17105 0.85 -0.1 3,897,580 + DDA3937_RS17105 0.85 -0.5 3,897,580 + DDA3937_RS17105 0.85 -0.0 3,897,581 - DDA3937_RS17105 0.85 -1.7 3,897,581 - DDA3937_RS17105 0.85 -1.3 3,897,654 - DDA3937_RS17105 0.88 +0.6 3,898,058 - +0.5 3,898,103 + +0.1 3,898,174 + -0.3 3,898,175 - -0.3 3,898,199 + -1.0 3,898,199 + -1.1 3,898,201 + -1.3 3,898,202 - -1.9 3,898,261 - DDA3937_RS17110 0.10 -1.5 3,898,261 - DDA3937_RS17110 0.10 -1.5 3,898,335 - DDA3937_RS17110 0.16 -0.6 3,898,347 + DDA3937_RS17110 0.17 -1.0 3,898,347 + DDA3937_RS17110 0.17 -0.6 3,898,348 - DDA3937_RS17110 0.17 -2.0 3,898,348 - DDA3937_RS17110 0.17 -1.6 3,898,471 - DDA3937_RS17110 0.26 -0.3 3,898,527 + DDA3937_RS17110 0.30 -0.7 3,898,539 + DDA3937_RS17110 0.31 -1.5 3,898,540 - DDA3937_RS17110 0.31 -0.4 3,898,731 + DDA3937_RS17110 0.45 +2.2 3,898,731 + DDA3937_RS17110 0.45 -1.2 3,898,732 - DDA3937_RS17110 0.45 -1.2 3,898,732 - DDA3937_RS17110 0.45 -0.7 3,898,744 + DDA3937_RS17110 0.46 -1.6 3,898,745 - DDA3937_RS17110 0.46 -1.0 3,898,745 - DDA3937_RS17110 0.46 -0.9 3,898,753 - DDA3937_RS17110 0.47 +0.3 3,898,792 + DDA3937_RS17110 0.50 -1.2 3,898,793 - DDA3937_RS17110 0.50 -1.2 3,898,793 - DDA3937_RS17110 0.50 -1.3 3,898,800 - DDA3937_RS17110 0.51 -1.7 3,898,893 - DDA3937_RS17110 0.58 -1.3 3,899,025 - DDA3937_RS17110 0.67 -0.5 3,899,097 - DDA3937_RS17110 0.73 +0.3 3,899,161 + DDA3937_RS17110 0.78 -1.3 3,899,162 - DDA3937_RS17110 0.78 -0.3 3,899,193 + DDA3937_RS17110 0.80 -1.0 3,899,193 + DDA3937_RS17110 0.80 -1.0 3,899,193 + DDA3937_RS17110 0.80 -1.3 3,899,193 + DDA3937_RS17110 0.80 -0.6 3,899,194 - DDA3937_RS17110 0.80 -0.8 3,899,304 + DDA3937_RS17110 0.88 +0.3 3,899,304 + DDA3937_RS17110 0.88 -2.0 3,899,304 + DDA3937_RS17110 0.88 -0.2 3,899,323 - DDA3937_RS17110 0.90 -0.6 3,899,326 - -2.7 3,899,330 - +3.9 3,899,330 - -2.0 3,899,330 - +0.0 3,899,431 + -1.7 3,899,458 + -1.7 3,899,458 + -0.9 3,899,459 - +0.3 3,899,459 - +1.8 3,899,459 - -1.3 3,899,497 - +0.9 3,899,497 - +0.5 3,899,500 + +0.6 3,899,500 + +0.5 3,899,509 - +1.2 3,899,509 - -2.1 3,899,608 + +1.0 3,899,608 + -0.9 3,899,633 - -0.8 3,899,677 + -1.0 3,899,678 - +0.2 3,899,678 - -1.5 3,899,678 - -1.5 3,899,678 - -0.6 3,899,735 - -0.6 3,899,752 - -0.1 3,899,845 + DDA3937_RS17115 0.13 +1.4 3,899,845 + DDA3937_RS17115 0.13 +0.4 3,899,847 + DDA3937_RS17115 0.13 -0.6 3,899,848 - DDA3937_RS17115 0.13 +0.3 3,899,848 - DDA3937_RS17115 0.13 -1.1 3,899,848 - DDA3937_RS17115 0.13 +0.5 3,899,848 - DDA3937_RS17115 0.13 -0.1 3,899,869 + DDA3937_RS17115 0.16 +1.3 3,899,870 - DDA3937_RS17115 0.17 -0.7 3,899,870 - DDA3937_RS17115 0.17 +1.9 3,899,870 - DDA3937_RS17115 0.17 -0.5 3,899,870 - DDA3937_RS17115 0.17 -0.3 3,899,941 - DDA3937_RS17115 0.28 +0.9 3,899,966 - DDA3937_RS17115 0.32 +0.4 3,900,094 - DDA3937_RS17115 0.53 -1.1 3,900,237 - DDA3937_RS17115 0.76 -0.3 3,900,288 + DDA3937_RS17115 0.84 +0.2 3,900,288 + DDA3937_RS17115 0.84 -0.4 3,900,288 + DDA3937_RS17115 0.84 -0.9 3,900,288 + DDA3937_RS17115 0.84 +1.1 3,900,292 + DDA3937_RS17115 0.85 -0.7 3,900,292 + DDA3937_RS17115 0.85 +0.0 3,900,292 + DDA3937_RS17115 0.85 -1.7 3,900,292 + DDA3937_RS17115 0.85 -0.9 3,900,292 + DDA3937_RS17115 0.85 +1.6 3,900,293 - DDA3937_RS17115 0.85 -1.1 3,900,332 + -0.2 3,900,332 + +0.4 3,900,333 - +1.1 3,900,360 + +0.1 3,900,361 - -0.5 3,900,361 - +0.5 3,900,386 - -1.1 3,900,386 - -0.4 3,900,386 - +0.4
Or see this region's nucleotide sequence