Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16920

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,842,928	+		DDA3937_RS16910	0.33	-0.5
3,842,928	+		DDA3937_RS16910	0.33	+0.1
3,842,929	-		DDA3937_RS16910	0.33	-0.1
3,842,974	+		DDA3937_RS16910	0.46	+1.2
3,842,975	-		DDA3937_RS16910	0.47	+0.9
3,843,007	+				+1.3
3,843,007	+		DDA3937_RS16910	0.56	+0.5
3,843,007	+		DDA3937_RS16910	0.56	+0.3
3,843,007	+		DDA3937_RS16910	0.56	+0.0
3,843,008	-		DDA3937_RS16910	0.56	+1.1
3,843,014	+		DDA3937_RS16910	0.58	-0.3
3,843,040	+		DDA3937_RS16910	0.66	+2.3
3,843,067	-		DDA3937_RS16910	0.73	+0.8
3,843,077	+		DDA3937_RS16910	0.76	-2.7
3,843,125	+				+0.0
3,843,125	+				+1.4
3,843,126	-				+1.9
3,843,138	+				-0.5
3,843,138	+				+1.0
3,843,139	-				+0.1
3,843,139	-				+0.9
3,843,203	-				+1.3
3,843,249	+				+0.8
3,843,250	-				+0.6
3,843,281	+				+1.7
3,843,281	+				+5.7
3,843,281	+				-2.0
3,843,281	+				+0.7
3,843,281	+				+2.1
3,843,281	+				+1.8
3,843,281	+				-0.4
3,843,282	-				-1.1
3,843,282	-				+0.2
3,843,288	+				-0.6
3,843,306	+				+0.8
3,843,306	+				-1.1
3,843,306	+				-1.2
3,843,306	+				-1.5
3,843,307	-				-1.2
3,843,307	-				+0.1
3,843,307	-				-0.9
3,843,310	+				-0.9
3,843,383	+		DDA3937_RS16915	0.17	+0.2
3,843,384	-		DDA3937_RS16915	0.17	-0.7
3,843,438	-		DDA3937_RS16915	0.25	-0.7
3,843,439	+		DDA3937_RS16915	0.25	-1.5
3,843,440	-		DDA3937_RS16915	0.26	+1.0
3,843,469	-		DDA3937_RS16915	0.30	-1.0
3,843,559	-		DDA3937_RS16915	0.45	+0.8
3,843,572	-		DDA3937_RS16915	0.47	-1.3
3,843,701	+		DDA3937_RS16915	0.67	-0.3
3,843,701	+		DDA3937_RS16915	0.67	-0.7
3,843,702	-		DDA3937_RS16915	0.68	+0.6
3,843,702	-		DDA3937_RS16915	0.68	-1.5
3,843,702	-		DDA3937_RS16915	0.68	-0.0
3,843,702	-		DDA3937_RS16915	0.68	-1.7
3,843,702	-		DDA3937_RS16915	0.68	-0.1
3,843,753	+		DDA3937_RS16915	0.76	+1.3
3,843,753	+		DDA3937_RS16915	0.76	-0.7
3,843,754	-		DDA3937_RS16915	0.76	-1.1
3,843,906	+				-0.2
3,843,990	+				-2.3
3,843,990	+				-0.8
3,843,990	+				-1.4
3,843,990	+				-1.4
3,843,990	+				+0.3
3,843,991	-				-3.8
3,843,991	-				-0.6
3,843,991	-				-2.1
3,844,107	+		DDA3937_RS16920	0.14	-2.2
3,844,107	+		DDA3937_RS16920	0.14	-2.2
3,844,107	+		DDA3937_RS16920	0.14	-1.0
3,844,269	+		DDA3937_RS16920	0.25	-2.1
3,844,269	+		DDA3937_RS16920	0.25	-1.2
3,844,269	+		DDA3937_RS16920	0.25	-1.9
3,844,269	+		DDA3937_RS16920	0.25	-0.9
3,844,269	+		DDA3937_RS16920	0.25	-1.4
3,844,270	-		DDA3937_RS16920	0.26	-1.3
3,844,270	-		DDA3937_RS16920	0.26	-1.7
3,844,270	-		DDA3937_RS16920	0.26	-3.6
3,844,270	-		DDA3937_RS16920	0.26	-0.2
3,844,270	-		DDA3937_RS16920	0.26	-1.2
3,844,270	-		DDA3937_RS16920	0.26	-2.0
3,844,270	-		DDA3937_RS16920	0.26	-0.2
3,844,270	-		DDA3937_RS16920	0.26	-1.5
3,844,270	-		DDA3937_RS16920	0.26	-1.2
3,844,270	-		DDA3937_RS16920	0.26	-0.2
3,844,270	-		DDA3937_RS16920	0.26	-2.5
3,844,459	+		DDA3937_RS16920	0.39	-2.2
3,844,578	+		DDA3937_RS16920	0.47	-0.5
3,844,578	+		DDA3937_RS16920	0.47	-0.4
3,844,578	+		DDA3937_RS16920	0.47	-1.3
3,844,578	+		DDA3937_RS16920	0.47	-0.2
3,844,579	-		DDA3937_RS16920	0.47	-0.7
3,844,579	-		DDA3937_RS16920	0.47	-2.4
3,844,579	-		DDA3937_RS16920	0.47	-1.6
3,844,579	-		DDA3937_RS16920	0.47	-0.9
3,844,665	+		DDA3937_RS16920	0.53	-2.5
3,844,666	-		DDA3937_RS16920	0.53	+0.4
3,844,666	-		DDA3937_RS16920	0.53	+0.8
3,844,666	-		DDA3937_RS16920	0.53	-1.9
3,844,732	+		DDA3937_RS16920	0.58	-2.5
3,844,732	+		DDA3937_RS16920	0.58	-0.6
3,844,733	-				-0.7
3,844,733	-		DDA3937_RS16920	0.58	-2.0
3,844,733	-		DDA3937_RS16920	0.58	-2.0
3,844,735	+		DDA3937_RS16920	0.58	-2.4
3,844,773	+		DDA3937_RS16920	0.61	-2.3
3,844,773	+		DDA3937_RS16920	0.61	-1.2
3,844,773	+		DDA3937_RS16920	0.61	-2.2
3,844,773	+		DDA3937_RS16920	0.61	-1.9
3,844,773	+		DDA3937_RS16920	0.61	+0.3
3,844,773	+		DDA3937_RS16920	0.61	+1.0
3,844,773	+		DDA3937_RS16920	0.61	-0.9
3,844,774	-		DDA3937_RS16920	0.61	-0.7
3,844,774	-		DDA3937_RS16920	0.61	-1.1
3,844,774	-		DDA3937_RS16920	0.61	-1.3
3,844,774	-		DDA3937_RS16920	0.61	-1.2
3,844,774	-		DDA3937_RS16920	0.61	-1.5
3,844,809	+		DDA3937_RS16920	0.63	-2.3
3,844,809	+		DDA3937_RS16920	0.63	-1.0
3,844,975	-		DDA3937_RS16920	0.75	-1.6
3,844,975	-		DDA3937_RS16920	0.75	-2.7
3,844,975	-		DDA3937_RS16920	0.75	-1.2
3,844,975	-		DDA3937_RS16920	0.75	-1.7
3,844,975	-		DDA3937_RS16920	0.75	-1.0
3,845,031	+		DDA3937_RS16920	0.79	-1.3
3,845,032	-		DDA3937_RS16920	0.79	-0.8
3,845,153	-		DDA3937_RS16920	0.87	-1.7
3,845,153	-		DDA3937_RS16920	0.87	-0.7
3,845,153	-		DDA3937_RS16920	0.87	-0.2
3,845,169	+		DDA3937_RS16920	0.89	-0.7
3,845,169	+		DDA3937_RS16920	0.89	-1.7
3,845,321	-				+0.4
3,845,321	-				-1.2
3,845,323	+				-1.7
3,845,323	+				-2.0
3,845,324	-				-1.9
3,845,324	-				-1.9
3,845,352	-				-0.9
3,845,512	-		DDA3937_RS16925	0.18	-1.0
3,845,539	+		DDA3937_RS16925	0.21	-2.1
3,845,539	+		DDA3937_RS16925	0.21	-1.6
3,845,540	-		DDA3937_RS16925	0.22	-1.7
3,845,627	+		DDA3937_RS16925	0.31	-1.4
3,845,627	+		DDA3937_RS16925	0.31	-1.2
3,845,627	+		DDA3937_RS16925	0.31	-1.3
3,845,628	-		DDA3937_RS16925	0.31	-1.4
3,845,628	-		DDA3937_RS16925	0.31	+0.4
3,845,628	-		DDA3937_RS16925	0.31	-0.9
3,845,628	-		DDA3937_RS16925	0.31	-1.3
3,845,657	+		DDA3937_RS16925	0.34	-0.0
3,845,657	+		DDA3937_RS16925	0.34	-2.0
3,845,658	-		DDA3937_RS16925	0.35	-2.1
3,845,658	-		DDA3937_RS16925	0.35	-1.0
3,845,658	-		DDA3937_RS16925	0.35	-1.2
3,845,663	+		DDA3937_RS16925	0.35	+0.0
3,845,663	+		DDA3937_RS16925	0.35	-1.9
3,845,664	-		DDA3937_RS16925	0.35	-0.6
3,845,664	-		DDA3937_RS16925	0.35	-1.4
3,845,673	+		DDA3937_RS16925	0.36	-1.5
3,845,705	-		DDA3937_RS16925	0.40	-1.5
3,845,739	+		DDA3937_RS16925	0.43	-0.9
3,845,741	+		DDA3937_RS16925	0.44	-1.5
3,845,741	+		DDA3937_RS16925	0.44	-1.4
3,845,741	+		DDA3937_RS16925	0.44	-0.9
3,845,741	+		DDA3937_RS16925	0.44	-0.2
3,845,741	+		DDA3937_RS16925	0.44	-0.2
3,845,741	+		DDA3937_RS16925	0.44	-1.6
3,845,741	+		DDA3937_RS16925	0.44	-2.2
3,845,742	-		DDA3937_RS16925	0.44	-1.3
3,845,742	-		DDA3937_RS16925	0.44	-2.2
3,845,742	-		DDA3937_RS16925	0.44	-1.2
3,845,742	-		DDA3937_RS16925	0.44	+0.3
3,845,742	-		DDA3937_RS16925	0.44	-0.2
3,845,742	-		DDA3937_RS16925	0.44	-0.2
3,845,742	-		DDA3937_RS16925	0.44	-0.4
3,845,807	+		DDA3937_RS16925	0.51	+1.2
3,845,807	+		DDA3937_RS16925	0.51	-0.2
3,845,807	+		DDA3937_RS16925	0.51	+0.1
3,845,808	-		DDA3937_RS16925	0.51	-3.5
3,845,808	-		DDA3937_RS16925	0.51	-2.5
3,845,811	+		DDA3937_RS16925	0.51	-1.2
3,845,811	+		DDA3937_RS16925	0.51	+0.6
3,845,811	+		DDA3937_RS16925	0.51	-0.7
3,845,811	+		DDA3937_RS16925	0.51	-1.5
3,845,811	+		DDA3937_RS16925	0.51	-1.7
3,845,812	-		DDA3937_RS16925	0.51	-2.3
3,845,812	-		DDA3937_RS16925	0.51	-0.7
3,845,812	-		DDA3937_RS16925	0.51	-1.5
3,845,876	+		DDA3937_RS16925	0.59	-0.5
3,845,877	-		DDA3937_RS16925	0.59	-0.4
3,845,877	-		DDA3937_RS16925	0.59	+0.8
3,845,877	-		DDA3937_RS16925	0.59	-1.3
3,845,923	-		DDA3937_RS16925	0.64	-3.1
3,845,923	-		DDA3937_RS16925	0.64	-0.9
3,846,006	-		DDA3937_RS16925	0.73	-2.0
3,846,006	-		DDA3937_RS16925	0.73	-0.5
3,846,018	+		DDA3937_RS16925	0.74	-1.2
3,846,019	-		DDA3937_RS16925	0.74	-0.9
3,846,019	-		DDA3937_RS16925	0.74	-1.7
3,846,036	-		DDA3937_RS16925	0.76	-0.9
3,846,108	+		DDA3937_RS16925	0.84	-2.4
3,846,152	+		DDA3937_RS16925	0.89	-0.5
3,846,152	+		DDA3937_RS16925	0.89	-1.2
3,846,153	-		DDA3937_RS16925	0.89	-1.3
3,846,153	-		DDA3937_RS16925	0.89	-1.2
3,846,153	-		DDA3937_RS16925	0.89	+1.1
3,846,198	+				-1.0
3,846,198	+				-1.2
3,846,198	+				-2.3
3,846,199	-				-1.1
3,846,199	-				-1.4
3,846,199	-				-1.5
3,846,199	-				-1.1
3,846,204	+				+0.8
3,846,204	+				-0.5
3,846,204	+				-2.2
3,846,204	+				-1.1
3,846,204	+				-1.4
3,846,205	-				-2.1
3,846,205	-				-0.6
3,846,205	-				-1.7
3,846,205	-				-1.1
3,846,205	-				-1.3
3,846,205	-				-2.0
3,846,205	-				-2.6
3,846,226	+				-1.2
3,846,252	+				-0.2
3,846,258	+				-1.9
3,846,264	+				-2.6
3,846,265	-				-0.6
3,846,265	-				-0.2