Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15855

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,624,027	+		DDA3937_RS15850	0.35	-0.8
3,624,028	-		DDA3937_RS15850	0.35	-0.3
3,624,028	-		DDA3937_RS15850	0.35	-0.8
3,624,028	-		DDA3937_RS15850	0.35	-0.9
3,624,028	-		DDA3937_RS15850	0.35	-0.3
3,624,028	-		DDA3937_RS15850	0.35	+1.3
3,624,028	-		DDA3937_RS15850	0.35	-0.1
3,624,028	-		DDA3937_RS15850	0.35	-0.6
3,624,129	+		DDA3937_RS15850	0.45	+0.1
3,624,130	-		DDA3937_RS15850	0.45	-1.0
3,624,130	-		DDA3937_RS15850	0.45	+1.3
3,624,130	-		DDA3937_RS15850	0.45	+0.2
3,624,189	+		DDA3937_RS15850	0.51	+0.9
3,624,190	-		DDA3937_RS15850	0.51	+0.6
3,624,190	-		DDA3937_RS15850	0.51	+0.3
3,624,257	+		DDA3937_RS15850	0.58	+0.0
3,624,258	-		DDA3937_RS15850	0.58	-2.6
3,624,258	-		DDA3937_RS15850	0.58	-0.3
3,624,290	-		DDA3937_RS15850	0.61	-0.4
3,624,290	-		DDA3937_RS15850	0.61	+0.5
3,624,290	-		DDA3937_RS15850	0.61	+0.5
3,624,292	+		DDA3937_RS15850	0.61	-0.3
3,624,292	+		DDA3937_RS15850	0.61	-0.3
3,624,292	+		DDA3937_RS15850	0.61	-0.8
3,624,292	+		DDA3937_RS15850	0.61	+0.2
3,624,292	+		DDA3937_RS15850	0.61	-0.7
3,624,293	-		DDA3937_RS15850	0.61	-1.2
3,624,293	-		DDA3937_RS15850	0.61	-0.2
3,624,293	-		DDA3937_RS15850	0.61	-0.6
3,624,293	-		DDA3937_RS15850	0.61	+0.7
3,624,293	-		DDA3937_RS15850	0.61	-0.1
3,624,310	+		DDA3937_RS15850	0.63	-1.0
3,624,310	+		DDA3937_RS15850	0.63	+0.1
3,624,311	-		DDA3937_RS15850	0.63	+0.4
3,624,337	+		DDA3937_RS15850	0.65	-0.5
3,624,337	+		DDA3937_RS15850	0.65	-0.9
3,624,337	+		DDA3937_RS15850	0.65	-4.1
3,624,337	+		DDA3937_RS15850	0.65	-0.3
3,624,338	-		DDA3937_RS15850	0.66	+1.3
3,624,338	-		DDA3937_RS15850	0.66	+0.0
3,624,338	-		DDA3937_RS15850	0.66	-0.4
3,624,338	-		DDA3937_RS15850	0.66	+0.5
3,624,338	-		DDA3937_RS15850	0.66	+0.3
3,624,338	-		DDA3937_RS15850	0.66	+1.0
3,624,338	-		DDA3937_RS15850	0.66	-0.6
3,624,339	+		DDA3937_RS15850	0.66	-1.6
3,624,340	-		DDA3937_RS15850	0.66	+0.3
3,624,340	-		DDA3937_RS15850	0.66	+0.3
3,624,559	+		DDA3937_RS15850	0.87	-0.3
3,624,561	+		DDA3937_RS15850	0.88	-1.1
3,624,561	+		DDA3937_RS15850	0.88	+0.2
3,624,561	+		DDA3937_RS15850	0.88	-1.4
3,624,561	+		DDA3937_RS15850	0.88	-1.0
3,624,562	-		DDA3937_RS15850	0.88	-1.1
3,624,562	-		DDA3937_RS15850	0.88	+0.2
3,624,562	-		DDA3937_RS15850	0.88	+0.5
3,624,562	-		DDA3937_RS15850	0.88	-0.1
3,624,562	-		DDA3937_RS15850	0.88	-0.7
3,624,562	-		DDA3937_RS15850	0.88	+0.9
3,624,562	-		DDA3937_RS15850	0.88	-1.7
3,624,562	-		DDA3937_RS15850	0.88	-1.8
3,624,571	-		DDA3937_RS15850	0.89	-0.6
3,624,591	+				+0.4
3,624,591	+				-1.1
3,624,591	+				+1.0
3,624,592	-				+0.7
3,624,592	-				+0.7
3,624,592	-				-1.4
3,624,639	-				+1.1
3,624,686	+				-0.3
3,624,686	+				+1.3
3,624,686	+				-0.3
3,624,686	+				+1.1
3,624,687	-				+0.4
3,624,687	-				-1.8
3,624,687	-				-0.5
3,624,687	-				-0.4
3,624,687	-				+1.2
3,624,687	-				-0.4
3,624,687	-				+0.2
3,624,689	+				+0.4
3,624,689	+				+1.9
3,624,689	+				+1.1
3,624,689	+				-0.2
3,624,689	+				-0.8
3,624,690	-				-1.0
3,624,690	-				+1.2
3,624,690	-				+0.7
3,624,690	-				+0.7
3,624,690	-				-1.4
3,624,690	-				-0.7
3,624,690	-				-1.3
3,624,692	+				-0.1
3,624,692	+				-1.8
3,624,693	-				+0.3
3,624,693	-				+0.3
3,624,693	-				-0.5
3,624,829	+				-0.2
3,624,829	+				-0.3
3,624,847	+				+0.5
3,624,847	+				+0.3
3,624,847	+				-1.2
3,624,847	+				+0.4
3,624,847	+				+0.7
3,624,848	-				-0.6
3,624,848	-				-0.6
3,624,848	-				+0.7
3,624,848	-				+0.2
3,624,893	+				-1.0
3,624,894	-				+0.7
3,624,906	+				+0.7
3,624,906	+				-1.0
3,624,907	-				+0.2
3,624,907	-				+1.1
3,624,907	-				-0.5
3,624,909	+				+0.2
3,624,910	-				-0.6
3,624,938	+				+0.9
3,624,943	+				-0.5
3,624,987	+				+0.2
3,624,988	-				-0.3
3,624,988	-				+0.1
3,624,988	-				+1.7
3,625,017	+				+0.4
3,625,017	+				-0.2
3,625,017	+				+0.3
3,625,018	-				-1.3
3,625,018	-				-2.4
3,625,018	-				+0.1
3,625,071	-				+0.2
3,625,079	+				-2.4
3,625,096	+				+0.2
3,625,097	-				-1.1
3,625,169	-				+2.5
3,625,169	-		DDA3937_RS15855	0.16	-0.5
3,625,220	+		DDA3937_RS15855	0.20	+0.2
3,625,220	+		DDA3937_RS15855	0.20	-0.3
3,625,293	+		DDA3937_RS15855	0.27	-0.5
3,625,293	+		DDA3937_RS15855	0.27	+0.4
3,625,293	+		DDA3937_RS15855	0.27	+0.3
3,625,293	+		DDA3937_RS15855	0.27	-1.4
3,625,294	-		DDA3937_RS15855	0.27	-0.4
3,625,294	-		DDA3937_RS15855	0.27	+6.5
3,625,386	+		DDA3937_RS15855	0.35	+3.0
3,625,386	+		DDA3937_RS15855	0.35	-2.7
3,625,387	-		DDA3937_RS15855	0.35	-0.3
3,625,387	-		DDA3937_RS15855	0.35	-0.0
3,625,387	-		DDA3937_RS15855	0.35	+0.0
3,625,387	-		DDA3937_RS15855	0.35	+2.3
3,625,387	-		DDA3937_RS15855	0.35	-1.6
3,625,589	+		DDA3937_RS15855	0.52	+0.2
3,625,589	+		DDA3937_RS15855	0.52	+0.5
3,625,589	+		DDA3937_RS15855	0.52	-0.6
3,625,589	+		DDA3937_RS15855	0.52	+3.2
3,625,589	+		DDA3937_RS15855	0.52	-2.1
3,625,590	-		DDA3937_RS15855	0.52	-0.8
3,625,590	-		DDA3937_RS15855	0.52	-0.7
3,625,782	-		DDA3937_RS15855	0.69	-0.4
3,626,014	+		DDA3937_RS15855	0.89	-0.1
3,626,038	+				-1.5
3,626,068	+				-2.6
3,626,069	-				-0.6
3,626,071	+				-0.5
3,626,075	-				+1.0
3,626,093	-				-1.6
3,626,159	+				-1.2
3,626,179	+				+1.0
3,626,199	+				-0.7
3,626,199	+				+0.1
3,626,199	+				+1.6
3,626,199	+				+2.0
3,626,199	+				-0.8
3,626,199	+				-0.6
3,626,200	-				-1.0
3,626,200	-				-0.3
3,626,200	-				-0.1
3,626,200	-				+0.4
3,626,200	-				+0.7
3,626,200	-				+0.6
3,626,200	-				-2.0
3,626,272	+				+0.7
3,626,272	+				-1.8
3,626,273	-				+0.7
3,626,355	+				+0.3
3,626,355	+				+0.9
3,626,356	-				-1.0
3,626,393	+				+1.9
3,626,404	+				-0.5
3,626,404	+				-1.3
3,626,533	+		DDA3937_RS15860	0.13	-1.2
3,626,533	+		DDA3937_RS15860	0.13	+0.1
3,626,549	-		DDA3937_RS15860	0.14	+0.1
3,626,637	-		DDA3937_RS15860	0.20	+0.2
3,626,637	-				+2.5
3,626,860	+		DDA3937_RS15860	0.36	+0.4
3,626,861	-		DDA3937_RS15860	0.36	+1.0
3,626,959	+		DDA3937_RS15860	0.42	-2.3
3,626,960	-		DDA3937_RS15860	0.43	-0.8
3,627,109	-		DDA3937_RS15860	0.53	-1.1
3,627,109	-		DDA3937_RS15860	0.53	-1.5
3,627,121	+		DDA3937_RS15860	0.54	-1.4
3,627,121	+		DDA3937_RS15860	0.54	+0.0
3,627,122	-		DDA3937_RS15860	0.54	+2.7