Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15775

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,612,474	+		DDA3937_RS15770	0.46	-2.4
3,612,475	-		DDA3937_RS15770	0.47	-0.9
3,612,560	+		DDA3937_RS15770	0.52	-2.3
3,612,561	-		DDA3937_RS15770	0.52	-1.2
3,612,576	-		DDA3937_RS15770	0.53	+0.3
3,612,657	+		DDA3937_RS15770	0.58	-0.3
3,612,657	+		DDA3937_RS15770	0.58	+0.1
3,612,657	+		DDA3937_RS15770	0.58	-1.0
3,612,657	+		DDA3937_RS15770	0.58	-2.4
3,612,657	+		DDA3937_RS15770	0.58	-1.7
3,612,657	+		DDA3937_RS15770	0.58	-1.9
3,612,658	-		DDA3937_RS15770	0.58	-0.6
3,612,658	-		DDA3937_RS15770	0.58	-0.3
3,612,711	-		DDA3937_RS15770	0.61	-1.4
3,612,783	+		DDA3937_RS15770	0.66	-2.4
3,612,783	+		DDA3937_RS15770	0.66	-0.6
3,612,783	+		DDA3937_RS15770	0.66	-0.9
3,612,783	+		DDA3937_RS15770	0.66	+0.5
3,612,783	+		DDA3937_RS15770	0.66	-1.7
3,612,783	+		DDA3937_RS15770	0.66	-0.4
3,612,784	-		DDA3937_RS15770	0.66	+0.1
3,612,861	+		DDA3937_RS15770	0.71	-1.0
3,612,861	+		DDA3937_RS15770	0.71	+0.4
3,612,861	+		DDA3937_RS15770	0.71	+1.3
3,612,862	-		DDA3937_RS15770	0.71	-1.0
3,612,862	-		DDA3937_RS15770	0.71	-1.8
3,612,921	+		DDA3937_RS15770	0.74	-1.0
3,612,921	+		DDA3937_RS15770	0.74	-0.9
3,612,921	+		DDA3937_RS15770	0.74	-1.0
3,612,922	-		DDA3937_RS15770	0.74	-2.5
3,612,922	-		DDA3937_RS15770	0.74	-1.7
3,612,922	-		DDA3937_RS15770	0.74	-0.5
3,612,922	-		DDA3937_RS15770	0.74	-2.3
3,612,922	-		DDA3937_RS15770	0.74	-1.2
3,612,922	-		DDA3937_RS15770	0.74	-0.6
3,612,922	-		DDA3937_RS15770	0.74	-0.9
3,613,057	+		DDA3937_RS15770	0.83	-0.7
3,613,057	+		DDA3937_RS15770	0.83	+2.0
3,613,057	+		DDA3937_RS15770	0.83	-0.9
3,613,057	+		DDA3937_RS15770	0.83	-1.3
3,613,058	-		DDA3937_RS15770	0.83	-0.3
3,613,058	-		DDA3937_RS15770	0.83	-2.4
3,613,058	-		DDA3937_RS15770	0.83	-2.1
3,613,058	-		DDA3937_RS15770	0.83	-0.3
3,613,058	-		DDA3937_RS15770	0.83	-1.4
3,613,058	-		DDA3937_RS15770	0.83	-0.6
3,613,077	+		DDA3937_RS15770	0.84	-1.3
3,613,077	+		DDA3937_RS15770	0.84	-1.6
3,613,078	-		DDA3937_RS15770	0.84	-1.4
3,613,094	+		DDA3937_RS15770	0.85	-1.2
3,613,095	-		DDA3937_RS15770	0.85	+0.3
3,613,128	-		DDA3937_RS15770	0.87	-1.7
3,613,128	-		DDA3937_RS15770	0.87	-0.3
3,613,138	+		DDA3937_RS15770	0.88	-1.0
3,613,158	+		DDA3937_RS15770	0.89	-1.0
3,613,158	+		DDA3937_RS15770	0.89	+0.3
3,613,158	+		DDA3937_RS15770	0.89	-1.3
3,613,159	-		DDA3937_RS15770	0.89	-2.1
3,613,161	+		DDA3937_RS15770	0.89	-2.6
3,613,162	-		DDA3937_RS15770	0.89	-0.1
3,613,162	-		DDA3937_RS15770	0.89	+0.7
3,613,162	-		DDA3937_RS15770	0.89	-2.4
3,613,162	-		DDA3937_RS15770	0.89	-1.0
3,613,162	-		DDA3937_RS15770	0.89	-1.1
3,613,162	-		DDA3937_RS15770	0.89	-2.7
3,613,231	+				-1.6
3,613,231	+				-1.3
3,613,231	+				-1.9
3,613,272	+				-1.6
3,613,272	+				-2.3
3,613,273	-				-1.6
3,613,313	+				-2.4
3,613,313	+				-2.7
3,613,313	+				-0.7
3,613,314	-				-0.9
3,613,391	+				+0.1
3,613,392	-				-1.9
3,613,453	+		DDA3937_RS15775	0.10	+0.2
3,613,528	-		DDA3937_RS15775	0.20	+1.1
3,613,692	-		DDA3937_RS15775	0.42	-0.2
3,613,738	-		DDA3937_RS15775	0.48	-0.9
3,613,742	+		DDA3937_RS15775	0.49	-0.1
3,613,742	+		DDA3937_RS15775	0.49	-0.6
3,613,743	-		DDA3937_RS15775	0.49	-0.3
3,613,743	-		DDA3937_RS15775	0.49	-2.1
3,614,076	+				+0.4
3,614,103	+				+0.0
3,614,103	+				-1.4
3,614,103	+				-0.7
3,614,103	+				-0.8
3,614,104	-				+2.0
3,614,104	-				-0.4
3,614,104	-				+0.2
3,614,104	-				-0.9
3,614,104	-				-0.9
3,614,104	-				-0.3
3,614,134	+				-1.6
3,614,134	+				-2.3
3,614,135	-				-0.3
3,614,152	-				+0.2
3,614,156	+				-0.5
3,614,156	+				+0.4
3,614,190	-				+0.1
3,614,226	+				+3.4
3,614,226	+				-1.3
3,614,226	+				+0.5
3,614,226	+				+1.2
3,614,226	+				-1.5
3,614,227	-				-0.8
3,614,227	-				+1.3
3,614,227	-				+1.1
3,614,227	-				-0.0
3,614,228	+				+0.2
3,614,228	+				+0.6
3,614,228	+				+0.1
3,614,229	-				-1.6
3,614,229	-				+0.7
3,614,229	-				-1.2
3,614,250	+				+0.4
3,614,250	+				+0.3
3,614,250	+				+0.4
3,614,250	+				-1.0
3,614,251	-				-0.9
3,614,251	-				+1.1
3,614,251	-				+0.6
3,614,251	-				+1.1
3,614,427	+		DDA3937_RS15780	0.13	-1.3
3,614,428	-		DDA3937_RS15780	0.13	+1.3
3,614,490	-		DDA3937_RS15780	0.17	+1.7
3,614,490	-		DDA3937_RS15780	0.17	-1.6
3,614,601	+				-0.9
3,614,601	+		DDA3937_RS15780	0.25	+0.4
3,614,601	+		DDA3937_RS15780	0.25	-1.9
3,614,601	+		DDA3937_RS15780	0.25	-2.1
3,614,602	-		DDA3937_RS15780	0.26	+0.8
3,614,673	+		DDA3937_RS15780	0.31	+1.7
3,614,674	-		DDA3937_RS15780	0.31	-2.4
3,614,931	+		DDA3937_RS15780	0.50	+2.8
3,614,931	+				-1.9
3,614,932	-		DDA3937_RS15780	0.50	+0.1
3,614,934	+		DDA3937_RS15780	0.50	-0.1
3,614,968	+		DDA3937_RS15780	0.53	+1.1
3,614,968	+		DDA3937_RS15780	0.53	+1.7
3,614,999	-		DDA3937_RS15780	0.55	-0.3
3,614,999	-		DDA3937_RS15780	0.55	+1.1
3,615,019	+		DDA3937_RS15780	0.56	-0.9
3,615,023	+		DDA3937_RS15780	0.57	+2.6
3,615,023	+		DDA3937_RS15780	0.57	-1.3
3,615,024	-		DDA3937_RS15780	0.57	-1.6
3,615,085	-		DDA3937_RS15780	0.61	-0.9